Prupe.2G096500_v2.0.a1

SEC12-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
15179312 .. 15183855
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G096500.1

Sequence Viewer

Length: 1197 bp
ATGGCGACCGGTGGGGCAGAACAGCAGGGTCCGGTGACGTGCGGGTCGTGGATCCGACGGCCCGAAAGCGCCAATTGGGCGGTGTTCGGGAGGTCCAGTCGTAAGGATTCTTCTTCGTCGTCGTCTTCTTCAGTTCTCGAGATCTTCTCCTTCGACCCCAAGACTACTTCTCTCTCTTCCTCTCCCCTGACTACATATGTGCTTGAAGAAGTGGAGGGTGAGCCAGTTTCCATTGCGGTGCACCCAACCGGAGACGACATCGTTTGCTCTACCTCTAATGGTGGCTGCAAATTGTTTGAGTTATACGGCCAAGAATCAAATGCAAAGCTGCTGGCAAAAGAACTAGCTCCTTTGAAGGGAATTGGTCCACAGAAGTGTCTAGCTTTTAGTGTTGATGGATCTAAATTGGCTACTGGTGGGGTGGATGGGCATTTGAGAATTTTGGAGTGGCCAAGCCTCCGAATAATTTTAGATGAACCAAGAGCGCACAAGTCTGTTCGTGATTTGGATTTCAGCCTAGACTCCGAGTTCTTAGCTTCAACATCTACTGATGGAGCAGCAAGAATATGGAAGATGGAAGATTGTGTTCCTTTGACTACTTTGACTCGCAACTCAGATGAAAAGATTGAACTATGTCGGTTTTCTAAGGATGCAACAAAACCCTTTCTATTTTGCACTGTTCAAAAAGGTGATAAAGCTTTGACCGCAGTTTGGGACATAAGTACATGGACTAAAATTGGGCATAAGAGGCTACTTAAAAAGTCTGCTTCCGTTATGTCTGTCAGCAAGGATGGGAAATATCTTGCTCTAGGAAGCAAAGATGGAGATATTTGTGTGGTTGAAGTTAAGAAAATGGAGATTTGCCACTGGAGTAAGAGGCTACACCTGGGTACATGCATTGAAACTCTGGAGTTTTGTCCCACTGAAAGGGTTGTGCTCACTACTTCTAATGAATGGGGAGCTGTTGTAACTAAGTTAACTGTTCCAGCAGATTGGAAAGAGTGGCAGATCTATATGGTCCTTTTAGGACTGTTTTTAGCATCTGCTGTCGCCTTTTACATCTTCTTCGAGAACTCTGATTCATTTTGGAACTTCCCCCTTGGAAGAAATCAACCAGCAAAACCGCACTTGGGAGCATTTTTAAGAGATTCAAAGTCTTCTGATGACAGAAATATTTGGGGTCCGGTTGATATGTGA

Protein Analysis

399

Amino Acids

43.85

Weight (kDa)

6.21

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
AciI CCGC 5 cut(s) 42, 80, 236, 705, 1124
AclWI GGATC 3 cut(s) 46, 59, 406
AcoI YGGCCR 2 cut(s) 307, 449
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 724, 892
AfiI CCNNNNNNNGG 4 cut(s) 356, 711, 927, 1130
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 8 cut(s) 206, 355, 540, 629, 683, 842, 902, 1152
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 885
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 6 cut(s) 328, 347, 383, 536, 698, 962
AluI AGCT 6 cut(s) 328, 347, 383, 536, 698, 962
Alw21I GWGCWC 2 cut(s) 243, 939
Alw26I GTCTC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 3 cut(s) 46, 59, 406
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 3 cut(s) 59, 307, 449
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 285, 328, 557
ApoI RAATTY 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 2 cut(s) 71, 487
AspS9I GGNCC 6 cut(s) 29, 60, 93, 365, 1018, 1181
AsuHPI GGTGA 3 cut(s) 46, 230, 701
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 5 cut(s) 29, 93, 365, 1018, 1181
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 451
BamHI GGATCC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbsI GAAGAC 2 cut(s) 117, 1149
Bbv12I GWGCWC 2 cut(s) 243, 939
BbvI GCAGC 3 cut(s) 272, 315, 569
BccI CCATC 6 cut(s) 389, 419, 545, 568, 785, 815
BceAI ACGGC 2 cut(s) 74, 322
BciT130I CCWGG 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 4 cut(s) 344, 380, 518, 809
BfoI RGCGCY 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 2 cut(s) 141, 1008
BisI GCNGC 3 cut(s) 286, 329, 558
BlsI GCNGC 3 cut(s) 287, 330, 559
Bme1390I CCNGG 1 cut(s) 887
Bme18I GGWCC 5 cut(s) 29, 93, 365, 1018, 1181
BmeT110I CYCGRG 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 39
BmgT120I GGNCC 6 cut(s) 29, 60, 93, 365, 1018, 1181
BmiI GGNNCC 3 cut(s) 30, 53, 1182
BmrFI CCNGG 1 cut(s) 887
BmsI GCATC 2 cut(s) 640, 1049
BpiI GAAGAC 2 cut(s) 117, 1149
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 2 cut(s) 889, 929
BsaJI CCNNGG 2 cut(s) 886, 1099
BsaWI WCCGGW 4 cut(s) 8, 31, 248, 1183
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 951, 981
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 711, 927, 1130
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 4 cut(s) 96, 224, 418, 872
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 886, 1099
BseGI GGATG 3 cut(s) 430, 655, 796
BseLI CCNNNNNNNGG 4 cut(s) 356, 711, 927, 1130
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 4 cut(s) 96, 224, 418, 872
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 3 cut(s) 272, 315, 569
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 61, 309, 451
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 243, 939
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 4 cut(s) 9, 32, 249, 1184
BslFI GGGAC 2 cut(s) 728, 903
BslI CCNNNNNNNGG 4 cut(s) 356, 711, 927, 1130
BsmAI GTCTC 1 cut(s) 246
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 728, 903
BsnI GGCC 3 cut(s) 61, 309, 451
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 243, 939
Bsp143I GATC 4 cut(s) 51, 141, 398, 1008
BspACI CCGC 5 cut(s) 42, 80, 236, 705, 1124
BspANI GGCC 3 cut(s) 61, 309, 451
BspCNI CTCAG 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 30, 53, 1182
BspPI GGATC 3 cut(s) 46, 59, 406
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 4 cut(s) 96, 224, 418, 872
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 886, 1099
BssMI GATC 4 cut(s) 51, 141, 398, 1008
BssT1I CCWWGG 1 cut(s) 1099
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 3 cut(s) 679, 982, 1032
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 532, 613, 645, 972
BstF5I GGATG 3 cut(s) 430, 655, 796
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 2 cut(s) 71, 487
BstKTI GATC 4 cut(s) 54, 144, 401, 1011
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 4 cut(s) 51, 141, 398, 1008
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 77, 704, 748
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 1 cut(s) 885
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 272, 315, 569
BstV2I GAAGAC 2 cut(s) 117, 1149
BstX2I RGATCY 4 cut(s) 51, 141, 398, 1008
BstXI CCANNNNNNTGG 1 cut(s) 993
BstYI RGATCY 4 cut(s) 51, 141, 398, 1008
BsuRI GGCC 3 cut(s) 61, 309, 451
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 3 cut(s) 430, 655, 796
BtsIMutI CAGTG 3 cut(s) 675, 865, 921
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 71, 487
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 6 cut(s) 29, 60, 93, 365, 1018, 1181
Csp6I GTAC 2 cut(s) 723, 891
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 2 cut(s) 726, 894
CviQI GTAC 2 cut(s) 723, 891
DdeI CTNAG 4 cut(s) 532, 613, 645, 972
DpnI GATC 4 cut(s) 53, 143, 400, 1010
DpnII GATC 4 cut(s) 51, 141, 398, 1008
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 307, 449
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 1099
Eco47I GGWCC 5 cut(s) 29, 93, 365, 1018, 1181
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 1099
EcoT22I ATGCAT 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 1099
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 2 cut(s) 729, 897
FaqI GGGAC 2 cut(s) 728, 903
FatI CATG 2 cut(s) 725, 893
FauI CCCGC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 286, 329, 558
FokI GGATG 3 cut(s) 437, 662, 803
Fsp4HI GCNGC 3 cut(s) 286, 329, 558
FspBI CTAG 4 cut(s) 344, 380, 518, 809
GlaI GCGC 2 cut(s) 70, 486
GluI GCNGC 3 cut(s) 286, 329, 558
GsuI CTGGAG 2 cut(s) 889, 929
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 3 cut(s) 61, 309, 451
HapII CCGG 4 cut(s) 9, 32, 249, 1184
HhaI GCGC 2 cut(s) 71, 487
Hin1II CATG 2 cut(s) 729, 897
Hin6I GCGC 2 cut(s) 69, 485
HinP1I GCGC 2 cut(s) 69, 485
HincII GTYRAC 1 cut(s) 978
HindII GTYRAC 1 cut(s) 978
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 6 cut(s) 107, 314, 521, 604, 1079, 1148
HpaI GTTAAC 1 cut(s) 978
HpaII CCGG 4 cut(s) 9, 32, 249, 1184
HphI GGTGA 3 cut(s) 46, 230, 701
Hpy166II GTNNAC 3 cut(s) 241, 368, 978
Hpy188I TCNGA 6 cut(s) 56, 461, 526, 616, 1078, 1162
Hpy188III TCNNGA 6 cut(s) 88, 137, 139, 500, 908, 1069
Hpy8I GTNNAC 3 cut(s) 241, 368, 978
Hpy99I CGWCG 3 cut(s) 60, 121, 124
HpyAV CCTTC 2 cut(s) 160, 349
HpyCH4III ACNGT 3 cut(s) 679, 982, 1032
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 241, 288, 323, 653, 675, 897
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 704, 748
HpyF3I CTNAG 4 cut(s) 532, 613, 645, 972
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 729, 897
HspAI GCGC 2 cut(s) 69, 485
KspAI GTTAAC 1 cut(s) 978
Kzo9I GATC 4 cut(s) 51, 141, 398, 1008
LmnI GCTCC 4 cut(s) 352, 554, 959, 1133
Lsp1109I GCAGC 3 cut(s) 272, 315, 569
LweI GCATC 2 cut(s) 640, 1049
MaeI CTAG 4 cut(s) 344, 380, 518, 809
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 34, 967
MalI GATC 4 cut(s) 53, 143, 400, 1010
MboI GATC 4 cut(s) 51, 141, 398, 1008
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 4 cut(s) 51, 141, 398, 1008
MhlI GDGCHC 2 cut(s) 243, 939
MlsI TGGCCA 1 cut(s) 451
MluCI AATT 7 cut(s) 73, 290, 360, 404, 438, 465, 735
MluNI TGGCCA 1 cut(s) 451
MlyI GAGTC 2 cut(s) 515, 598
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 7 cut(s) 84, 190, 208, 283, 467, 741, 870
Mox20I TGGCCA 1 cut(s) 451
Mph1103I ATGCAT 1 cut(s) 899
MscI TGGCCA 1 cut(s) 451
MseI TTAA 4 cut(s) 756, 846, 977, 1142
MslI CAYNNNNRTG 2 cut(s) 236, 373
Msp20I TGGCCA 1 cut(s) 451
MspI CCGG 4 cut(s) 9, 32, 249, 1184
MspR9I CCNGG 1 cut(s) 887
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 3 cut(s) 77, 704, 748
NdeI CATATG 1 cut(s) 196
NdeII GATC 4 cut(s) 51, 141, 398, 1008
NlaIII CATG 2 cut(s) 729, 897
NlaIV GGNNCC 3 cut(s) 30, 53, 1182
NmuCI GTSAC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 899
NspI RCATGY 1 cut(s) 897
OliI CACNNNNGTG 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 4 cut(s) 107, 314, 1079, 1148
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 3 cut(s) 287, 330, 559
PleI GAGTC 2 cut(s) 515, 598
PpsI GAGTC 2 cut(s) 515, 598
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 3 cut(s) 30, 53, 1182
PspPI GGNCC 6 cut(s) 29, 60, 93, 365, 1018, 1181
PsuI RGATCY 4 cut(s) 51, 141, 398, 1008
RsaI GTAC 2 cut(s) 724, 892
RsaNI GTAC 2 cut(s) 723, 891
RseI CAYNNNNRTG 2 cut(s) 236, 373
SaqAI TTAA 4 cut(s) 756, 846, 977, 1142
SatI GCNGC 3 cut(s) 286, 329, 558
Sau3AI GATC 4 cut(s) 51, 141, 398, 1008
Sau96I GGNCC 6 cut(s) 29, 60, 93, 365, 1018, 1181
SchI GAGTC 2 cut(s) 515, 598
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 2 cut(s) 243, 939
SfaNI GCATC 2 cut(s) 640, 1049
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 5 cut(s) 29, 93, 365, 1018, 1181
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 236, 373
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 7 cut(s) 73, 290, 360, 404, 438, 465, 735
SsiI CCGC 5 cut(s) 42, 80, 236, 705, 1124
SspI AATATT 1 cut(s) 1174
SspMI CTAG 4 cut(s) 344, 380, 518, 809
StyD4I CCNGG 1 cut(s) 885
StyI CCWWGG 1 cut(s) 1099
TaaI ACNGT 3 cut(s) 679, 982, 1032
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 138, 153, 1068
TasI AATT 7 cut(s) 73, 290, 360, 404, 438, 465, 735
TatI WGTACW 1 cut(s) 722
TfiI GAWTC 4 cut(s) 107, 314, 1079, 1148
Tru1I TTAA 4 cut(s) 756, 846, 977, 1142
Tru9I TTAA 4 cut(s) 756, 846, 977, 1142
TscAI CASTG 3 cut(s) 682, 872, 928
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 3 cut(s) 285, 328, 557
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 489, 633, 966, 1071
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 3 cut(s) 682, 872, 928
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 5 cut(s) 29, 93, 365, 1018, 1181
XapI RAATTY 1 cut(s) 438
XceI RCATGY 1 cut(s) 897
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 4 cut(s) 344, 380, 518, 809
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.