pycom07g05960

SEC12-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
5274351 .. 5278901
4551 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05960.9

Sequence Viewer

Length: 1194 bp
ATGGCGGGTGGTGGGTCCGATCAGCAGGGTCCGGTCACGTGCGGGTCGTGGATCCGGCGGCCCGAAAACGCCAGTTGGGTGGTGTTCGGGAGGTCCAGGCCTAAGGGCTCTCCTTCTTCTTCTTCGTCAGTTCTCGAGGTCTTCTCCTTCGACCCCAAGACCACTTCTCACTCCTCCTCTCCCCTGAGCACATATGTGCTTGAAGAAGTGGAGGGTGATGTAGTTTCGATTGCGGTGCACCCAAGCGGCGACGACATCGTCTGCTCTACCTCCAATGGTGTCTGCAAATTGTTTGAGTTATATGGCCAAGAATCAACTGCAAAGCTGTTGGCAAAAGAACCACCTCCTCTGGAAGGAATCGGTCCACAGAAGTGCCTAGCTTTTAGTGTTGATGGATCTAAATTGGCTACTGGCGGTGTGGATGGGCATTTGAGAATTTTGGAGTGGCCAAGCCTGCGAATAATCTTAGATGAACCGAATGCGCATAACTCTGTGCGTGATATGGATTTCAGCCTAGACACCGAATTTTTAGCTTCAACATCTACTGATGGCTCAGCAAGAATATGGAAGCTGGAAGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGGATGAAAAGATTGAACTATGCCGGTTTTCTAAAGATGGGACAAAACCCTTTCTGTTTTGCACTGTTCAAAAAGGCGATAAAGCTTTCACTGCAGTTTGGGACATACGTACATGGAGTAAAATTGGGCATAAGCGGCTACTTAAAAAGTCTGCTTCTGTTATGTCTGTCAGCAAAGACGGGAAATATCTTGCACTGGGAAGCAAAGATGGTGATATATGCGTGGTGGAAGTTAAGAAAATGGAAATTTGCCACTGGAGTAAGAGGCTACATCTGGGAACAGGCATTGAAACTTTGGAGTTCTGTCCAACTGAAAGGGTTGTGCTTAGTACTTCTAATCAATGGGGAGCTGTGGTGACTAAGTTAACTGTTCCAGCAGATTGGAAAGAGTGGCAGATCTATCTGGTGCTGTTAGGGCTGTTTTTAGCATCCGCTGTCGCATTTTACATCTTCTTTGAGAACTCTGATTCATTTTGGAACTTCCCTCTTGGAAGAAATCAACCAGCAAGACCGCAATTTGGAGCATTTTTAAGAGAGTCTCCGTCTTCTGATGATAGAAATATTTGGGGTCCAGTGGATATGTGA

Protein Analysis

398

Amino Acids

43.68

Weight (kDa)

5.88

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 483
AciI CCGC 9 cut(s) 5, 42, 58, 233, 246, 414, 745, 1041, 1121
AclWI GGATC 3 cut(s) 46, 59, 403
AcoI YGGCCR 2 cut(s) 304, 446
AcsI RAATTY 3 cut(s) 435, 524, 855
AcvI CACGTG 1 cut(s) 39
AfaI GTAC 2 cut(s) 721, 940
AfiI CCNNNNNNNGG 2 cut(s) 353, 1127
AgsI TTSAA 5 cut(s) 203, 537, 626, 680, 899
AjnI CCWGG 1 cut(s) 95
AleI CACNNNNGTG 2 cut(s) 194, 370
AluBI AGCT 6 cut(s) 325, 380, 533, 571, 695, 959
AluI AGCT 6 cut(s) 325, 380, 533, 571, 695, 959
Alw21I GWGCWC 2 cut(s) 191, 240
Alw26I GTCTC 1 cut(s) 1152
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 3 cut(s) 46, 59, 403
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 59, 98, 304, 446
ApaLI GTGCAC 1 cut(s) 236
ApoI RAATTY 3 cut(s) 435, 524, 855
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
AsuHPI GGTGA 3 cut(s) 227, 833, 976
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 5 cut(s) 15, 29, 93, 362, 1178
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 240
BalI TGGCCA 2 cut(s) 306, 448
BamHI GGATCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 110
BbrPI CACGTG 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 133, 1146
Bbv12I GWGCWC 2 cut(s) 191, 240
BccI CCATC 6 cut(s) 386, 416, 542, 572, 641, 812
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 1152
BfaI CTAG 2 cut(s) 377, 515
BfmI CTRYAG 1 cut(s) 702
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 3 cut(s) 59, 247, 746
BlpI GCTNAGC 1 cut(s) 553
BlsI GCNGC 3 cut(s) 60, 248, 747
BmcAI AGTACT 1 cut(s) 940
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 5 cut(s) 15, 29, 93, 362, 1178
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
BmiI GGNNCC 4 cut(s) 16, 30, 53, 1179
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 1046
BmuI ACTGGG 1 cut(s) 815
BpiI GAAGAC 2 cut(s) 133, 1146
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 886
Bpu10I CCTNAGC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 553
BsaAI YACGTR 2 cut(s) 39, 719
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1127
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 5 cut(s) 72, 415, 810, 869, 1181
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 3 cut(s) 427, 619, 1037
BseLI CCNNNNNNNGG 2 cut(s) 353, 1127
BseMII CTCAG 2 cut(s) 176, 567
BseNI ACTGG 5 cut(s) 72, 415, 810, 869, 1181
BseRI GAGGAG 3 cut(s) 163, 166, 336
BseSI GKGCMC 1 cut(s) 240
BshFI GGCC 4 cut(s) 61, 100, 306, 448
BsiHKAI GWGCWC 2 cut(s) 191, 240
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 32, 55, 634
BslFI GGGAC 2 cut(s) 664, 725
BslI CCNNNNNNNGG 2 cut(s) 353, 1127
BsmAI GTCTC 1 cut(s) 1152
BsmFI GGGAC 2 cut(s) 664, 725
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 4 cut(s) 61, 100, 306, 448
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 110, 191, 240
Bsp143I GATC 4 cut(s) 19, 51, 395, 1005
Bsp1720I GCTNAGC 1 cut(s) 553
BspACI CCGC 9 cut(s) 5, 42, 58, 233, 246, 414, 745, 1041, 1121
BspANI GGCC 4 cut(s) 61, 100, 306, 448
BspCNI CTCAG 2 cut(s) 177, 566
BspLI GGNNCC 4 cut(s) 16, 30, 53, 1179
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 3 cut(s) 46, 59, 403
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 5 cut(s) 72, 415, 810, 869, 1181
BssAI RCCGGY 1 cut(s) 633
BssMI GATC 4 cut(s) 19, 51, 395, 1005
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 676, 979
BstBAI YACGTR 2 cut(s) 39, 719
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 6 cut(s) 102, 185, 466, 553, 935, 969
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 427, 619, 1037
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 4 cut(s) 22, 54, 398, 1008
BstMAI GTCTC 1 cut(s) 1152
BstMBI GATC 4 cut(s) 19, 51, 395, 1005
BstMWI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 240
BstSNI TACGTA 1 cut(s) 719
BstV2I GAAGAC 2 cut(s) 133, 1146
BstX2I RGATCY 3 cut(s) 51, 395, 1005
BstXI CCANNNNNNTGG 2 cut(s) 79, 990
BstYI RGATCY 3 cut(s) 51, 395, 1005
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 61, 100, 306, 448
BtsCI GGATG 3 cut(s) 427, 619, 1037
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 5 cut(s) 672, 699, 803, 862, 1188
Cac8I GCNNGC 1 cut(s) 455
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
Csp6I GTAC 2 cut(s) 720, 939
CviAII CATG 1 cut(s) 723
CviQI GTAC 2 cut(s) 720, 939
DdeI CTNAG 6 cut(s) 102, 185, 466, 553, 935, 969
DpnI GATC 4 cut(s) 21, 53, 397, 1007
DpnII GATC 4 cut(s) 19, 51, 395, 1005
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 2 cut(s) 304, 446
Eco105I TACGTA 1 cut(s) 719
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 5 cut(s) 15, 29, 93, 362, 1178
Eco72I CACGTG 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 1 cut(s) 726
FaqI GGGAC 2 cut(s) 664, 725
FatI CATG 1 cut(s) 722
FauI CCCGC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 59, 247, 746
FokI GGATG 3 cut(s) 434, 626, 1024
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 59, 247, 746
FspAI RTGCGCAY 1 cut(s) 483
FspBI CTAG 2 cut(s) 377, 515
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 1 cut(s) 483
GluI GCNGC 3 cut(s) 59, 247, 746
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 4 cut(s) 61, 100, 306, 448
HapII CCGG 3 cut(s) 32, 55, 634
HhaI GCGC 1 cut(s) 484
Hin1II CATG 1 cut(s) 726
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 5 cut(s) 311, 357, 601, 1076, 1145
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 3 cut(s) 32, 55, 634
HphI GGTGA 3 cut(s) 227, 833, 976
Hpy166II GTNNAC 3 cut(s) 238, 365, 975
Hpy188I TCNGA 4 cut(s) 19, 613, 1075, 1159
Hpy188III TCNNGA 3 cut(s) 88, 134, 350
Hpy8I GTNNAC 3 cut(s) 238, 365, 975
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 123, 157, 347
HpyCH4III ACNGT 2 cut(s) 676, 979
HpyCH4IV ACGT 2 cut(s) 38, 718
HpyCH4V TGCA 6 cut(s) 238, 285, 320, 672, 704, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
HpyF3I CTNAG 6 cut(s) 102, 185, 466, 553, 935, 969
HpySE526I ACGT 2 cut(s) 38, 718
Hsp92II CATG 1 cut(s) 726
HspAI GCGC 1 cut(s) 482
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 4 cut(s) 19, 51, 395, 1005
LmnI GCTCC 2 cut(s) 956, 1130
LweI GCATC 1 cut(s) 1046
MaeI CTAG 2 cut(s) 377, 515
MaeII ACGT 2 cut(s) 38, 718
MaeIII GTNAC 2 cut(s) 34, 964
MalI GATC 4 cut(s) 21, 53, 397, 1007
MboI GATC 4 cut(s) 19, 51, 395, 1005
MboII GAAGA 9 cut(s) 108, 111, 114, 133, 215, 587, 1051, 1113, 1146
MflI RGATCY 3 cut(s) 51, 395, 1005
MhlI GDGCHC 3 cut(s) 110, 191, 240
MlsI TGGCCA 2 cut(s) 306, 448
MluCI AATT 7 cut(s) 287, 401, 435, 524, 732, 855, 1124
MluNI TGGCCA 2 cut(s) 306, 448
MlyI GAGTC 2 cut(s) 595, 1154
MmeI TCCRAC 1 cut(s) 941
Mox20I TGGCCA 2 cut(s) 306, 448
MscI TGGCCA 2 cut(s) 306, 448
MseI TTAA 4 cut(s) 753, 843, 974, 1139
MslI CAYNNNNRTG 2 cut(s) 194, 370
Msp20I TGGCCA 2 cut(s) 306, 448
MspA1I CMGCKG 1 cut(s) 1043
MspI CCGG 3 cut(s) 32, 55, 634
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
NdeI CATATG 1 cut(s) 193
NdeII GATC 4 cut(s) 19, 51, 395, 1005
NlaIII CATG 1 cut(s) 726
NlaIV GGNNCC 4 cut(s) 16, 30, 53, 1179
NmuCI GTSAC 2 cut(s) 34, 964
NsbI TGCGCA 1 cut(s) 483
OliI CACNNNNGTG 2 cut(s) 194, 370
PaeR7I CTCGAG 1 cut(s) 134
PceI AGGCCT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 3 cut(s) 311, 357, 1076
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 60, 248, 747
PleI GAGTC 2 cut(s) 595, 1153
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 2 cut(s) 595, 1153
Ppu21I YACGTR 2 cut(s) 39, 719
Psp6I CCWGG 1 cut(s) 95
PspCI CACGTG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 4 cut(s) 16, 30, 53, 1179
PspPI GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 3 cut(s) 51, 395, 1005
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 2 cut(s) 721, 940
RsaNI GTAC 2 cut(s) 720, 939
RseI CAYNNNNRTG 2 cut(s) 194, 370
SaqAI TTAA 4 cut(s) 753, 843, 974, 1139
SatI GCNGC 3 cut(s) 59, 247, 746
Sau3AI GATC 4 cut(s) 19, 51, 395, 1005
Sau96I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
ScaI AGTACT 1 cut(s) 940
SchI GAGTC 2 cut(s) 595, 1154
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 3 cut(s) 110, 191, 240
SfaNI GCATC 1 cut(s) 1046
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 5 cut(s) 15, 29, 93, 362, 1178
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 194, 370
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SnaBI TACGTA 1 cut(s) 719
Sse9I AATT 7 cut(s) 287, 401, 435, 524, 732, 855, 1124
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 9 cut(s) 5, 42, 58, 233, 246, 414, 745, 1041, 1121
SspI AATATT 1 cut(s) 1171
SspMI CTAG 2 cut(s) 377, 515
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 676, 979
TaiI ACGT 2 cut(s) 41, 721
TaqI TCGA 3 cut(s) 135, 150, 227
TaqII GACCGA 1 cut(s) 350
TasI AATT 7 cut(s) 287, 401, 435, 524, 732, 855, 1124
TatI WGTACW 1 cut(s) 938
TauI GCSGC 3 cut(s) 61, 249, 748
TfiI GAWTC 3 cut(s) 311, 357, 1076
Tru1I TTAA 4 cut(s) 753, 843, 974, 1139
Tru9I TTAA 4 cut(s) 753, 843, 974, 1139
TscAI CASTG 5 cut(s) 679, 706, 810, 869, 1188
TseFI GTSAC 2 cut(s) 34, 964
Tsp45I GTSAC 2 cut(s) 34, 964
TspDTI ATGAA 3 cut(s) 486, 630, 1068
TspGWI ACGGA 1 cut(s) 1140
TspRI CASTG 5 cut(s) 679, 706, 810, 869, 1188
Tth111I GACNNNGTC 1 cut(s) 257
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 5 cut(s) 15, 29, 93, 362, 1178
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 3 cut(s) 435, 524, 855
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 377, 515
ZrmI AGTACT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.