Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010850

Physical Location & Seq

Genomic Coordinates Forward (+)

32348450 .. 32353014

Gene Structure 4565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG155600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATTTTTGTTTTCAGATTGTTTGAGTTATATGGGCCAGAATCAAATGCCAAGCTGTTGGCAAGAGAATCAGCTCCTTTGCAAGGAATTGGTCCACAGAAGTGTCTAGCTTTTAGTGTCGATGGATCTAAGTTGGCTACTGGCGGTTTGGATGGGCATATGAGAATTCTGGAGTGGCCAAGCCTGTCCATAATTTTAGATGAACCTAATGCGCATAAATCTGTCCGTGATATGGATTTCAGCTTAGACTCAGAGTTCTTAGCTTCGACATCTACTGATGGCTCAGCGAGAATATGGAAGACAGAAGATGGTGTTCCTGTGACTACTTTGACTCGCGACTCTGATGAAAAGATTGAACTCTGTTGCTTTTCTAAGGATGGGACAAAACCCTTTCTATTTTGCACAGTTCAAAAAGGTGCAAGAGCTTTAACTTCTGTCTGGGACATAAGTACATGGAAGAAAATTGGACATAAAAGGCTACTTAAAAAGTCTGCTGCTGTTATGTCTGTCAGCAAGGATGGAAAATATCTTGCTCTGGGAAGCAAAGATGGAGATATATGTGTGGTTGAAGTTAAGAAAATGGAGATTTGCCACTGGAGTAAGAGGCTACACCTGGGAACTTGCATTGCCACTCTAGACTTCTGTCCCACTGAAAGGGTTGTGCTCACCACCTCTACTGAATGGGGAGCTGTGGTGACCAAGTTAAATGTTCCTGCAGATTGGAAAGAATGGCAGATCTATTTGTTGCTTTTAGGGCTGTTTTTGGCGTCCGCCGTTGCATTTTATATCTTCTTTGAGAAGTCTGATAATTTTTGGAACTTCCCTCTTGGAAAAAATCAACCAGCAAGACCTGAATTCGGGGCATTTGTAAAAGATTCACAGCCTTCTGATGATAGAAACATTTGGGGTCCTGTAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

307

Amino Acids

34.27

Weight (kDa)

6.54

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	32 - 128	2.7e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	32 - 221	8.7e-18	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	34 - 122	2.3e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	35 - 127	6.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	35 - 227	1.9e-19	WDR5 beta-propeller domain
WD40_Prp19	PF24814	35 - 196	1.1e-11	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	35 - 189	9.6e-09	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	66 - 225	8e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	70 - 99	5.3e-06	WD domain, G-beta repeat
EIF3I	PF24805	74 - 235	1.6e-10	EIF3I
Beta-prop_THOC3	PF25174	139 - 221	3.4e-08	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	143 - 225	4.2e-07	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52190
fragaria_vesca	FvH4_7g06890 FvH4_7g06890
malus_domestica	MD02G1241000.v1.1 MD07G1075600.v1.1
prunus_persica	Prupe.2G096500_v2.0.a1
pyrus_communis	pycom02g20620 pycom07g05960
rosa_chinensis	RchiOBHm_Chr1g0336681 RchiOBHm_Chr1g0336701 RchiOBHm_Chr1g0336731
rosa_laevigata	RLG00000029338
rosa_multiflora	Rmu_sc0000907.1_g000011 Rmu_sc0011778.1_g000011 Rmu_sc0042619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315360
rosa_rugosa	Rorug01G0127500
rosa_samantha	Rh1CG140000 Rh1DG155600
rosa_wichuraiana	Rw1G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	144, 771
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	165, 854
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	4 cut(s)	83, 232, 654, 857
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	356, 410, 569
AjnI	CCWGG	1 cut(s)	612
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	7 cut(s)	55, 74, 110, 243, 263, 425, 689
AluI	AGCT	7 cut(s)	55, 74, 110, 243, 263, 425, 689
Alw21I	GWGCWC	1 cut(s)	666
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	2 cut(s)	35, 176
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	2 cut(s)	165, 854
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	35, 92, 908
AsuHPI	GGTGA	2 cut(s)	658, 706
AvaII	GGWCC	2 cut(s)	92, 908
BalI	TGGCCA	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	7 cut(s)	116, 146, 272, 302, 371, 512, 542
BceAI	ACGGC	1 cut(s)	758
BciT130I	CCWGG	1 cut(s)	614
BfaI	CTAG	2 cut(s)	107, 635
BfmI	CTRYAG	2 cut(s)	714, 912
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	1 cut(s)	495
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	2 cut(s)	92, 908
BmgT120I	GGNCC	3 cut(s)	35, 92, 908
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	1 cut(s)	614
BoxI	GACNNNNGTC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	191, 616
Bpu1102I	GCTNAGC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	767
BsaJI	CCNNGG	1 cut(s)	613
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 232, 654, 857
Bse1I	ACTGG	2 cut(s)	145, 599
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	3 cut(s)	157, 382, 523
BseLI	CCNNNNNNNGG	4 cut(s)	83, 232, 654, 857
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	264, 297
BseNI	ACTGG	2 cut(s)	145, 599
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	37, 178
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	3 cut(s)	394, 455, 630
BslI	CCNNNNNNNGG	4 cut(s)	83, 232, 654, 857
BsmFI	GGGAC	3 cut(s)	394, 455, 630
BsnI	GGCC	2 cut(s)	37, 178
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	2 cut(s)	125, 735
Bsp1720I	GCTNAGC	1 cut(s)	283
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	2 cut(s)	144, 771
BspANI	GGCC	2 cut(s)	37, 178
BspCNI	CTCAG	2 cut(s)	263, 296
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	145, 599
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	2 cut(s)	125, 735
BssNI	GRCGYC	1 cut(s)	767
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	406
BstACI	GRCGYC	1 cut(s)	767
BstDEI	CTNAG	6 cut(s)	129, 244, 250, 259, 283, 372
BstEII	GGTNACC	1 cut(s)	694
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	157, 382, 523
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	128, 738
BstMBI	GATC	2 cut(s)	125, 735
BstMWI	GCNNNNNNNGC	1 cut(s)	754
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	922
BstPAI	GACNNNNGTC	1 cut(s)	642
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	2 cut(s)	714, 912
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	125, 735
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	2 cut(s)	125, 735
BsuRI	GGCC	2 cut(s)	37, 178
BtsCI	GGATG	3 cut(s)	157, 382, 523
BtsIMutI	CAGTG	2 cut(s)	592, 648
BtuMI	TCGCGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	35, 92, 908
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	2 cut(s)	453, 919
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	6 cut(s)	129, 244, 250, 259, 283, 372
DpnI	GATC	2 cut(s)	127, 737
DpnII	GATC	2 cut(s)	125, 735
EaeI	YGGCCR	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	760
Eco47I	GGWCC	2 cut(s)	92, 908
Eco91I	GGTNACC	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	908
EcoO65I	GGTNACC	1 cut(s)	694
EcoRI	GAATTC	2 cut(s)	165, 854
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	2 cut(s)	456, 922
FaqI	GGGAC	3 cut(s)	394, 455, 630
FatI	CATG	2 cut(s)	452, 918
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	164, 389, 530
Fsp4HI	GCNGC	1 cut(s)	495
FspAI	RTGCGCAY	1 cut(s)	213
FspBI	CTAG	2 cut(s)	107, 635
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	2 cut(s)	191, 616
HaeIII	GGCC	2 cut(s)	37, 178
HgaI	GACGC	1 cut(s)	756
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	2 cut(s)	456, 922
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	6 cut(s)	41, 68, 248, 331, 338, 875
HphI	GGTGA	2 cut(s)	658, 706
Hpy166II	GTNNAC	2 cut(s)	95, 916
Hpy188I	TCNGA	5 cut(s)	17, 253, 343, 805, 889
Hpy188III	TCNNGA	3 cut(s)	170, 335, 635
Hpy8I	GTNNAC	2 cut(s)	95, 916
HpyAV	CCTTC	1 cut(s)	894
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	82, 402, 419, 624, 716, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	754
HpyF3I	CTNAG	6 cut(s)	129, 244, 250, 259, 283, 372
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	2 cut(s)	456, 922
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	125, 735
LmnI	GCTCC	2 cut(s)	79, 686
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	107, 635
MaeIII	GTNAC	2 cut(s)	319, 694
MalI	GATC	2 cut(s)	127, 737
MboI	GATC	2 cut(s)	125, 735
MboII	GAAGA	4 cut(s)	310, 317, 469, 781
MflI	RGATCY	2 cut(s)	125, 735
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	6 cut(s)	87, 165, 192, 462, 808, 854
MluNI	TGGCCA	1 cut(s)	178
MlyI	GAGTC	3 cut(s)	242, 325, 332
MnlI	CCTC	3 cut(s)	597, 682, 834
Mox20I	TGGCCA	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	178
MseI	TTAA	4 cut(s)	428, 483, 573, 704
MslI	CAYNNNNRTG	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	754
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	2 cut(s)	125, 735
NlaIII	CATG	2 cut(s)	456, 922
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	2 cut(s)	319, 694
NruI	TCGCGA	1 cut(s)	336
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	922
OliI	CACNNNNGTG	1 cut(s)	100
PciI	ACATGT	1 cut(s)	918
PfeI	GAWTC	3 cut(s)	41, 68, 875
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	3 cut(s)	242, 325, 332
PpsI	GAGTC	3 cut(s)	242, 325, 332
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	918
PshAI	GACNNNNGTC	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	3 cut(s)	35, 92, 908
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	125, 735
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	428, 483, 573, 704
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	2 cut(s)	125, 735
Sau96I	GGNCC	3 cut(s)	35, 92, 908
SchI	GAGTC	3 cut(s)	242, 325, 332
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	666
SfcI	CTRYAG	2 cut(s)	714, 912
SinI	GGWCC	2 cut(s)	92, 908
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	6 cut(s)	87, 165, 192, 462, 808, 854
SsiI	CCGC	2 cut(s)	144, 771
SspMI	CTAG	2 cut(s)	107, 635
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	120, 266
TasI	AATT	6 cut(s)	87, 165, 192, 462, 808, 854
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	41, 68, 875
Tru1I	TTAA	4 cut(s)	428, 483, 573, 704
Tru9I	TTAA	4 cut(s)	428, 483, 573, 704
TscAI	CASTG	2 cut(s)	599, 655
TseFI	GTSAC	2 cut(s)	319, 694
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	319, 694
TspDTI	ATGAA	2 cut(s)	216, 360
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	599, 655
VpaK11BI	GGWCC	2 cut(s)	92, 908
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	2 cut(s)	165, 854
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	1 cut(s)	922
XmiI	GTMKAC	1 cut(s)	915
XspI	CTAG	2 cut(s)	107, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.