Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010850

Physical Location & Seq

Genomic Coordinates Forward (+)

36713913 .. 36717872

Gene Structure 3960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAGGGAGGCGGGTCGGAGCAGCAGGGTACAGTGACATGCGGGTCGTGGATCCGGCGACCCGAGAACGTGAATTGGGTGGTGTTCGGGAGGTCCAGGGGTAAAGAAGACTCCAGTTCAGTTCTGACCATCTTCTCCTTCGACCCCAAGACCACTTGTCTCTCTTCCTCTCCTTTGGCCACTTATGTGTTTGAAGCGGTGGACGGTGATCCTGTTTCGATTGCGGTGCACCCCAGCGGGGACGACGTCGTTTGCTCCACCTCCAATGGTGGCTGCAAATTGTTTGAGTTATATGGGCCAGAATCAAATGCCAAGCTGTTGGCAAGAGAATCAGCTCCTTTGCAAGGAATTGGTCCACAGAAGTGTCTAGCTTTTAGTGTCGATGGATCTAAGTTGGCTACCGGCGGTTTGGATGGGCATATGAGAATTCTGGAGTGGCCAAGCCTGTCCATAATTTTAGATGAACCTAAGGCGCATAAATCTGTCCATGATATGGATTTCAGCTTAGACTCAGAGTTCTTAGCTTCGACATCTACTGATGGCTCAGCGAGAATATGGAAGACGGAAGATGGTGTTCCCGTGACTACTTTGACTCGCAACTCCGATGAAAAGATTGAACTCTGTTGCTTTTCTAAGGATGGGACAAAACCCTTTCTATTTTGCACAGTTCAAAAAGGTGCAAAAGCTTTAACTTCAATTTGCCACTGGAGTAAGAGGCTACACCTGGGAACTTGCATTGCCACTCTAGACTTCTGTCCCACTGAAAGGGTTGTGCTCACCACCTCTAGTGAATGGGGAGCTGTGGTGACCAAGTTAAATGTTCCTGCAGATTGGAAAGGTTTGTCTCCCATCCTCTCTGTTTTTGTGTTAATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

293

Amino Acids

31.52

Weight (kDa)

5.42

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	61 - 221	3.5e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	68 - 215	2.9e-12	THOC3 beta-propeller domain
WDR55	PF24796	69 - 227	1.1e-09	WDR55
Beta-prop_WDR3_1st	PF25173	73 - 210	1.4e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	74 - 215	1.2e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	74 - 197	6.4e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	122 - 215	4.4e-12	WDR5 beta-propeller domain
WD40	PF00400	157 - 186	8.3e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52190
fragaria_vesca	FvH4_7g06890 FvH4_7g06890
malus_domestica	MD02G1241000.v1.1 MD07G1075600.v1.1
prunus_persica	Prupe.2G096500_v2.0.a1
pyrus_communis	pycom02g20620 pycom07g05960
rosa_chinensis	RchiOBHm_Chr1g0336681 RchiOBHm_Chr1g0336701 RchiOBHm_Chr1g0336731
rosa_laevigata	RLG00000029338
rosa_multiflora	Rmu_sc0000907.1_g000011 Rmu_sc0011778.1_g000011 Rmu_sc0042619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315360
rosa_rugosa	Rorug01G0127500
rosa_samantha	Rh1CG140000 Rh1DG155600
rosa_wichuraiana	Rw1G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AatII	GACGTC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	493
AciI	CCGC	6 cut(s)	12, 42, 197, 224, 237, 405
AclWI	GGATC	4 cut(s)	46, 59, 203, 394
AcoI	YGGCCR	2 cut(s)	177, 437
AcsI	RAATTY	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	31, 875
AfiI	CCNNNNNNNGG	4 cut(s)	238, 344, 493, 765
AgsI	TTSAA	4 cut(s)	194, 617, 671, 696
AhdI	GACNNNNNGTC	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	95, 723
AleI	CACNNNNGTG	2 cut(s)	185, 361
AluBI	AGCT	7 cut(s)	316, 335, 371, 504, 524, 686, 800
AluI	AGCT	7 cut(s)	316, 335, 371, 504, 524, 686, 800
Alw21I	GWGCWC	2 cut(s)	231, 777
Alw26I	GTCTC	2 cut(s)	164, 849
Alw44I	GTGCAC	1 cut(s)	227
AlwI	GGATC	4 cut(s)	46, 59, 203, 394
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	177, 296, 437
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	22, 273
ApoI	RAATTY	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	93, 296, 353
AsuHPI	GGTGA	3 cut(s)	218, 769, 817
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	93, 353
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	231
BalI	TGGCCA	2 cut(s)	179, 439
BamHI	GGATCC	1 cut(s)	51
BbsI	GAAGAC	2 cut(s)	114, 566
Bbv12I	GWGCWC	2 cut(s)	231, 777
BbvI	GCAGC	2 cut(s)	34, 260
BccI	CCATC	7 cut(s)	137, 377, 407, 533, 563, 632, 857
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	2 cut(s)	97, 725
BcoDI	GTCTC	2 cut(s)	164, 849
BfaI	CTAG	3 cut(s)	368, 746, 786
BfmI	CTRYAG	1 cut(s)	825
BisI	GCNGC	2 cut(s)	23, 274
BlpI	GCTNAGC	1 cut(s)	544
BlsI	GCNGC	2 cut(s)	24, 275
Bme1390I	CCNGG	2 cut(s)	97, 725
Bme18I	GGWCC	2 cut(s)	93, 353
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	3 cut(s)	93, 296, 353
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	97, 725
BoxI	GACNNNNGTC	1 cut(s)	753
BpiI	GAAGAC	2 cut(s)	114, 566
BpmI	CTGGAG	3 cut(s)	97, 452, 727
Bpu1102I	GCTNAGC	1 cut(s)	544
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	96, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 344, 493, 765
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	114, 710
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	97, 725
BseDI	CCNNGG	2 cut(s)	96, 724
BseGI	GGATG	3 cut(s)	418, 643, 849
BseLI	CCNNNNNNNGG	4 cut(s)	238, 344, 493, 765
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	525, 558
BseNI	ACTGG	2 cut(s)	114, 710
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	34, 260
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	3 cut(s)	179, 298, 439
BsiHKAI	GWGCWC	2 cut(s)	231, 777
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	55, 402
BslFI	GGGAC	3 cut(s)	254, 655, 741
BslI	CCNNNNNNNGG	4 cut(s)	238, 344, 493, 765
BsmAI	GTCTC	2 cut(s)	164, 849
BsmFI	GGGAC	3 cut(s)	254, 655, 741
BsnI	GGCC	3 cut(s)	179, 298, 439
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	231, 777
Bsp143I	GATC	3 cut(s)	51, 208, 386
Bsp1720I	GCTNAGC	1 cut(s)	544
BspACI	CCGC	6 cut(s)	12, 42, 197, 224, 237, 405
BspANI	GGCC	3 cut(s)	179, 298, 439
BspCNI	CTCAG	2 cut(s)	524, 557
BspLI	GGNNCC	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	4 cut(s)	46, 59, 203, 394
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	114, 710
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	96, 724
BssMI	GATC	3 cut(s)	51, 208, 386
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	97, 725
Bst4CI	ACNGT	3 cut(s)	34, 206, 667
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	7 cut(s)	390, 468, 505, 511, 520, 544, 633
BstEII	GGTNACC	1 cut(s)	805
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	418, 643, 849
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	54, 211, 389
BstMAI	GTCTC	2 cut(s)	164, 849
BstMBI	GATC	3 cut(s)	51, 208, 386
BstNI	CCWGG	2 cut(s)	97, 725
BstNSI	RCATGY	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	753
BstPI	GGTNACC	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	95, 723
BstSFI	CTRYAG	1 cut(s)	825
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	34, 260
BstV2I	GAAGAC	2 cut(s)	114, 566
BstX2I	RGATCY	2 cut(s)	51, 386
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	51, 386
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	179, 298, 439
BtsCI	GGATG	3 cut(s)	418, 643, 849
BtsIMutI	CAGTG	3 cut(s)	39, 703, 759
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	93, 296, 353
Csp6I	GTAC	2 cut(s)	30, 874
CviAII	CATG	2 cut(s)	39, 488
CviQI	GTAC	2 cut(s)	30, 874
DdeI	CTNAG	7 cut(s)	390, 468, 505, 511, 520, 544, 633
DpnI	GATC	3 cut(s)	53, 210, 388
DpnII	GATC	3 cut(s)	51, 208, 386
DrdI	GACNNNNNNGTC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	156
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	2 cut(s)	177, 437
Eam1104I	CTCTTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	93, 353
Eco81I	CCTNAGG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	805
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	95, 723
FaeI	CATG	2 cut(s)	42, 491
FaqI	GGGAC	3 cut(s)	254, 655, 741
FatI	CATG	2 cut(s)	38, 487
FauI	CCCGC	3 cut(s)	5, 35, 230
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	23, 274
FokI	GGATG	3 cut(s)	425, 650, 836
Fsp4HI	GCNGC	2 cut(s)	23, 274
FspBI	CTAG	3 cut(s)	368, 746, 786
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	2 cut(s)	23, 274
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	3 cut(s)	97, 452, 727
HaeIII	GGCC	3 cut(s)	179, 298, 439
HapII	CCGG	2 cut(s)	55, 402
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	42, 491
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	5 cut(s)	110, 302, 329, 509, 592
HpaII	CCGG	2 cut(s)	55, 402
HphI	GGTGA	3 cut(s)	218, 769, 817
Hpy166II	GTNNAC	3 cut(s)	202, 229, 356
Hpy188I	TCNGA	4 cut(s)	19, 126, 514, 604
Hpy188III	TCNNGA	3 cut(s)	88, 431, 746
Hpy8I	GTNNAC	3 cut(s)	202, 229, 356
Hpy99I	CGWCG	2 cut(s)	248, 251
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	34, 206, 667
HpyCH4IV	ACGT	2 cut(s)	69, 246
HpyCH4V	TGCA	7 cut(s)	229, 276, 343, 663, 680, 735, 827
HpyF3I	CTNAG	7 cut(s)	390, 468, 505, 511, 520, 544, 633
HpySE526I	ACGT	2 cut(s)	69, 246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	42, 491
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	51, 208, 386
LmnI	GCTCC	4 cut(s)	19, 260, 340, 797
Lsp1109I	GCAGC	2 cut(s)	34, 260
MaeI	CTAG	3 cut(s)	368, 746, 786
MaeII	ACGT	2 cut(s)	69, 246
MaeIII	GTNAC	3 cut(s)	34, 580, 805
MalI	GATC	3 cut(s)	53, 210, 388
MboI	GATC	3 cut(s)	51, 208, 386
MboII	GAAGA	5 cut(s)	119, 124, 156, 571, 578
MflI	RGATCY	2 cut(s)	51, 386
MhlI	GDGCHC	2 cut(s)	231, 777
MlsI	TGGCCA	2 cut(s)	179, 439
MluCI	AATT	6 cut(s)	73, 278, 348, 426, 453, 696
MluNI	TGGCCA	2 cut(s)	179, 439
MlyI	GAGTC	3 cut(s)	104, 503, 586
MnlI	CCTC	6 cut(s)	84, 178, 271, 708, 793, 863
Mox20I	TGGCCA	2 cut(s)	179, 439
MscI	TGGCCA	2 cut(s)	179, 439
MseI	TTAA	3 cut(s)	689, 815, 869
MslI	CAYNNNNRTG	2 cut(s)	185, 361
Msp20I	TGGCCA	2 cut(s)	179, 439
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	55, 402
MspR9I	CCNGG	2 cut(s)	97, 725
MvaI	CCWGG	2 cut(s)	97, 725
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	3 cut(s)	51, 208, 386
NlaIII	CATG	2 cut(s)	42, 491
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	3 cut(s)	34, 580, 805
NspI	RCATGY	1 cut(s)	42
OliI	CACNNNNGTG	2 cut(s)	185, 361
PfeI	GAWTC	2 cut(s)	302, 329
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	24, 275
PleI	GAGTC	3 cut(s)	104, 503, 586
PpsI	GAGTC	3 cut(s)	104, 503, 586
PshAI	GACNNNNGTC	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	95, 723
PspEI	GGTNACC	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	95, 723
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	93, 296, 353
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	51, 386
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	2 cut(s)	31, 875
RsaNI	GTAC	2 cut(s)	30, 874
RseI	CAYNNNNRTG	2 cut(s)	185, 361
SaqAI	TTAA	3 cut(s)	689, 815, 869
SatI	GCNGC	2 cut(s)	23, 274
Sau3AI	GATC	3 cut(s)	51, 208, 386
Sau96I	GGNCC	3 cut(s)	93, 296, 353
SchI	GAGTC	3 cut(s)	104, 503, 586
ScrFI	CCNGG	2 cut(s)	97, 725
SduI	GDGCHC	2 cut(s)	231, 777
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	2 cut(s)	93, 353
SmiMI	CAYNNNNRTG	2 cut(s)	185, 361
Sse9I	AATT	6 cut(s)	73, 278, 348, 426, 453, 696
SsiI	CCGC	6 cut(s)	12, 42, 197, 224, 237, 405
SspMI	CTAG	3 cut(s)	368, 746, 786
StyD4I	CCNGG	2 cut(s)	95, 723
TaaI	ACNGT	3 cut(s)	34, 206, 667
TaiI	ACGT	2 cut(s)	72, 249
TaqI	TCGA	4 cut(s)	141, 218, 381, 527
TasI	AATT	6 cut(s)	73, 278, 348, 426, 453, 696
TatI	WGTACW	1 cut(s)	873
TfiI	GAWTC	2 cut(s)	302, 329
Tru1I	TTAA	3 cut(s)	689, 815, 869
Tru9I	TTAA	3 cut(s)	689, 815, 869
TscAI	CASTG	3 cut(s)	39, 710, 766
TseFI	GTSAC	3 cut(s)	34, 580, 805
TseI	GCWGC	2 cut(s)	22, 273
Tsp45I	GTSAC	3 cut(s)	34, 580, 805
TspDTI	ATGAA	2 cut(s)	477, 621
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	3 cut(s)	39, 710, 766
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	93, 353
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	426
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	3 cut(s)	368, 746, 786
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.