MD07G1075600.v1.1

SEC12-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
7232764 .. 7236902
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1075600.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGGCGGGTGGTGGGTCCGATCAGCGGGGTCCGGTCACGTGCGGGTCGTGGATCCGGCGGCCCGAAAACGCCAGTTGGGTGGTGTTCGGGAGGTCCAGGCCTAAGGGCTCTCCTTTTTCTTCTTCGTCAGTTCTCGAGATCTTCTCCTTCGACCCCAAGACCACTTCTCACTCCTCCTCTCCCCTGACCACATATGTGCTTGAAGAAGTGGAGGGTGATGTAGTTTCGATTGCGGTGCACCCAAGCGGCGACGACATCGTCTGCTCGACCTCCAATGGTGTCTGCAAATTGTTTGAGTTATATGGCCAGGAATCAACTGCAAAGCTATTGGCAAAAGAACTACCTCCTCTGGAAGGAATTGGTCCACAGAAGTGTCTAGCTTTTAGTGTTGATGGATCTAAATTGGCTACTGGCGGTGTGGATGGGCATTTGAGAATTTTGGAGTGGCCAAGCCTGCGAATAATCTTAGATGAACCAAAAACGCATAACTCTGTGCTTGATATGGATTTCAGCCTAGACACCGAATTCTTAGCTTCAACATATACCGATGGCTCAGCAAGAATATGGAAACTGGAAGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCTGATGAAAAGATTGAACTATGTCGGTTTTCTAAAGATGGGACAAAACCCTTTCTGTTTTGCACTGTGCAAAAAGGCGATAAAGCTTTCACAGCAGTTTGGGACATAAGTACATGGAGTAAAATTGGGCATAAGCGGCTACTTAAAAAGTCTGCTTCTGTTATGTCTGTCAGCAAAGACGGGAAATATCTTGCACTGGGAAGCAAAGATGGAGATATATGTGTGGTGGAAGTTAAGAAAATGGAAATTTGCCACTGGAGTAAGAGGCTACATCTGGGAACAGGCATTGAAACTTTGGAGTTCTGTCCAACTGAAAGGGTTGTGCTCAGTACTTCTAATCAATGGGGAGCTGTGGTGACTAAGTTAACTGTTCCAGCAGATTGGAAAGAGTGGCAGATCTATCTGGTGCTGTTAGGGCTGTTTTTAGCATCCGCTGTCGCATTTTACATCTTCTTTGAGAACTCTGATTCATTTTGGAACTTCCCTCTTGGAAGAAATCAACCAGCAAGACCGCAATTTGGAGCATTTTTAAGAGAGTCTCCGTCTTCTGATGATAGAAATATTTGGGGTCCGGTGGATATGTGA

Protein Analysis

398

Amino Acids

43.82

Weight (kDa)

5.88

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 43 - 311 5.1e-21 THOC3 beta-propeller domain
WD40_Prp19 PF24814 63 - 247 9.5e-13 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 66 - 210 2.2e-08 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 67 - 278 1.6e-09 WDR3 second beta-propeller domain
WDR55 PF24796 70 - 227 1.6e-08 WDR55
Beta-prop_EML_2 PF23414 76 - 218 3.5e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 122 - 309 7.1e-17 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 125 - 316 2.4e-15 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 158 - 314 6.2e-09 CDC20/Fizzy WD40 domain
EIF3I PF24805 163 - 323 6.6e-10 EIF3I
Beta-prop_EML_2 PF23414 224 - 312 1.9e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AclWI GGATC 3 cut(s) 46, 59, 403
AcoI YGGCCR 2 cut(s) 304, 446
AcsI RAATTY 3 cut(s) 435, 524, 855
AcvI CACGTG 1 cut(s) 39
AfaI GTAC 2 cut(s) 721, 940
AfiI CCNNNNNNNGG 3 cut(s) 24, 353, 1127
AgsI TTSAA 4 cut(s) 203, 537, 626, 899
AjnI CCWGG 2 cut(s) 95, 306
AleI CACNNNNGTG 2 cut(s) 194, 370
AluBI AGCT 5 cut(s) 325, 380, 533, 695, 959
AluI AGCT 5 cut(s) 325, 380, 533, 695, 959
Alw21I GWGCWC 2 cut(s) 240, 936
Alw26I GTCTC 1 cut(s) 1152
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 3 cut(s) 46, 59, 403
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 59, 98, 304, 446
ApaLI GTGCAC 1 cut(s) 236
ApoI RAATTY 3 cut(s) 435, 524, 855
AspS9I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
AsuHPI GGTGA 2 cut(s) 227, 976
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 5 cut(s) 15, 29, 93, 362, 1178
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 240
BalI TGGCCA 2 cut(s) 306, 448
BamHI GGATCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 110
BbrPI CACGTG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 1146
Bbv12I GWGCWC 2 cut(s) 240, 936
BccI CCATC 6 cut(s) 386, 416, 542, 572, 641, 812
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 97, 308
BcoDI GTCTC 1 cut(s) 1152
BfaI CTAG 2 cut(s) 377, 515
BglII AGATCT 2 cut(s) 138, 1005
BisI GCNGC 3 cut(s) 59, 247, 746
BlpI GCTNAGC 1 cut(s) 553
BlsI GCNGC 3 cut(s) 60, 248, 747
BmcAI AGTACT 1 cut(s) 940
Bme1390I CCNGG 2 cut(s) 97, 308
Bme18I GGWCC 5 cut(s) 15, 29, 93, 362, 1178
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
BmiI GGNNCC 4 cut(s) 16, 30, 53, 1179
BmrFI CCNGG 2 cut(s) 97, 308
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 1046
BmuI ACTGGG 1 cut(s) 815
BpiI GAAGAC 1 cut(s) 1146
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 886
Bpu1102I GCTNAGC 1 cut(s) 553
BsaAI YACGTR 1 cut(s) 39
BsaWI WCCGGW 2 cut(s) 31, 1180
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 353, 1127
Bse1I ACTGG 5 cut(s) 72, 415, 576, 810, 869
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 97, 308
BseGI GGATG 2 cut(s) 427, 1037
BseLI CCNNNNNNNGG 3 cut(s) 24, 353, 1127
BseMII CTCAG 2 cut(s) 567, 949
BseNI ACTGG 5 cut(s) 72, 415, 576, 810, 869
BseRI GAGGAG 3 cut(s) 163, 166, 336
BseSI GKGCMC 1 cut(s) 240
BshFI GGCC 4 cut(s) 61, 100, 306, 448
BsiHKAI GWGCWC 2 cut(s) 240, 936
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 32, 55, 1181
BslFI GGGAC 2 cut(s) 664, 725
BslI CCNNNNNNNGG 3 cut(s) 24, 353, 1127
BsmAI GTCTC 1 cut(s) 1152
BsmFI GGGAC 2 cut(s) 664, 725
BsnI GGCC 4 cut(s) 61, 100, 306, 448
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 110, 240, 936
Bsp143I GATC 5 cut(s) 19, 51, 138, 395, 1005
Bsp1720I GCTNAGC 1 cut(s) 553
BspANI GGCC 4 cut(s) 61, 100, 306, 448
BspCNI CTCAG 2 cut(s) 566, 948
BspLI GGNNCC 4 cut(s) 16, 30, 53, 1179
BspPI GGATC 3 cut(s) 46, 59, 403
BsrI ACTGG 5 cut(s) 72, 415, 576, 810, 869
BssMI GATC 5 cut(s) 19, 51, 138, 395, 1005
Bst2UI CCWGG 2 cut(s) 97, 308
Bst4CI ACNGT 2 cut(s) 676, 979
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 6 cut(s) 102, 466, 529, 553, 935, 969
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 427, 1037
BstKTI GATC 5 cut(s) 22, 54, 141, 398, 1008
BstMAI GTCTC 1 cut(s) 1152
BstMBI GATC 5 cut(s) 19, 51, 138, 395, 1005
BstMWI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
BstNI CCWGG 2 cut(s) 97, 308
BstSCI CCNGG 2 cut(s) 95, 306
BstSLI GKGCMC 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 1146
BstX2I RGATCY 4 cut(s) 51, 138, 395, 1005
BstXI CCANNNNNNTGG 2 cut(s) 79, 990
BstYI RGATCY 4 cut(s) 51, 138, 395, 1005
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 61, 100, 306, 448
BtsCI GGATG 2 cut(s) 427, 1037
BtsIMutI CAGTG 3 cut(s) 672, 803, 862
Cac8I GCNNGC 1 cut(s) 455
Cfr13I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
Csp6I GTAC 2 cut(s) 720, 939
CviAII CATG 1 cut(s) 723
CviQI GTAC 2 cut(s) 720, 939
DdeI CTNAG 6 cut(s) 102, 466, 529, 553, 935, 969
DpnI GATC 5 cut(s) 21, 53, 140, 397, 1007
DpnII GATC 5 cut(s) 19, 51, 138, 395, 1005
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 2 cut(s) 304, 446
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 5 cut(s) 15, 29, 93, 362, 1178
Eco72I CACGTG 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 95, 306
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 1 cut(s) 726
FaqI GGGAC 2 cut(s) 664, 725
FatI CATG 1 cut(s) 722
FauI CCCGC 2 cut(s) 18, 35
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 59, 247, 746
FokI GGATG 2 cut(s) 434, 1024
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 59, 247, 746
FspBI CTAG 2 cut(s) 377, 515
GluI GCNGC 3 cut(s) 59, 247, 746
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 4 cut(s) 61, 100, 306, 448
HapII CCGG 3 cut(s) 32, 55, 1181
Hin1II CATG 1 cut(s) 726
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 4 cut(s) 311, 601, 1076, 1145
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 3 cut(s) 32, 55, 1181
HphI GGTGA 2 cut(s) 227, 976
Hpy166II GTNNAC 3 cut(s) 238, 365, 975
Hpy188I TCNGA 4 cut(s) 19, 613, 1075, 1159
Hpy188III TCNNGA 4 cut(s) 88, 134, 136, 350
Hpy8I GTNNAC 3 cut(s) 238, 365, 975
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 157, 347
HpyCH4III ACNGT 2 cut(s) 676, 979
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 238, 285, 320, 672, 679, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
HpyF3I CTNAG 6 cut(s) 102, 466, 529, 553, 935, 969
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 726
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 5 cut(s) 19, 51, 138, 395, 1005
LmnI GCTCC 2 cut(s) 956, 1130
LweI GCATC 1 cut(s) 1046
MaeI CTAG 2 cut(s) 377, 515
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 34, 964
MalI GATC 5 cut(s) 21, 53, 140, 397, 1007
MboI GATC 5 cut(s) 19, 51, 138, 395, 1005
MboII GAAGA 8 cut(s) 111, 114, 133, 215, 587, 1051, 1113, 1146
MflI RGATCY 4 cut(s) 51, 138, 395, 1005
MhlI GDGCHC 3 cut(s) 110, 240, 936
MlsI TGGCCA 2 cut(s) 306, 448
MluCI AATT 8 cut(s) 287, 357, 401, 435, 524, 732, 855, 1124
MluNI TGGCCA 2 cut(s) 306, 448
MlyI GAGTC 2 cut(s) 595, 1154
MmeI TCCRAC 1 cut(s) 941
MnlI CCTC 9 cut(s) 84, 184, 187, 205, 280, 354, 357, 867, 1104
Mox20I TGGCCA 2 cut(s) 306, 448
MscI TGGCCA 2 cut(s) 306, 448
MseI TTAA 4 cut(s) 753, 843, 974, 1139
MslI CAYNNNNRTG 2 cut(s) 194, 370
Msp20I TGGCCA 2 cut(s) 306, 448
MspA1I CMGCKG 2 cut(s) 25, 1043
MspI CCGG 3 cut(s) 32, 55, 1181
MspR9I CCNGG 2 cut(s) 97, 308
MvaI CCWGG 2 cut(s) 97, 308
MwoI GCNNNNNNNGC 4 cut(s) 454, 701, 745, 1024
NdeI CATATG 1 cut(s) 193
NdeII GATC 5 cut(s) 19, 51, 138, 395, 1005
NlaIII CATG 1 cut(s) 726
NlaIV GGNNCC 4 cut(s) 16, 30, 53, 1179
NmuCI GTSAC 2 cut(s) 34, 964
OliI CACNNNNGTG 2 cut(s) 194, 370
PaeR7I CTCGAG 1 cut(s) 134
PceI AGGCCT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 2 cut(s) 311, 1076
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 60, 248, 747
PleI GAGTC 2 cut(s) 595, 1153
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 2 cut(s) 595, 1153
Ppu21I YACGTR 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 95, 306
PspCI CACGTG 1 cut(s) 39
PspGI CCWGG 2 cut(s) 95, 306
PspN4I GGNNCC 4 cut(s) 16, 30, 53, 1179
PspPI GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
PsuI RGATCY 4 cut(s) 51, 138, 395, 1005
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 2 cut(s) 721, 940
RsaNI GTAC 2 cut(s) 720, 939
RseI CAYNNNNRTG 2 cut(s) 194, 370
SaqAI TTAA 4 cut(s) 753, 843, 974, 1139
SatI GCNGC 3 cut(s) 59, 247, 746
Sau3AI GATC 5 cut(s) 19, 51, 138, 395, 1005
Sau96I GGNCC 6 cut(s) 15, 29, 60, 93, 362, 1178
ScaI AGTACT 1 cut(s) 940
SchI GAGTC 2 cut(s) 595, 1154
ScrFI CCNGG 2 cut(s) 97, 308
SduI GDGCHC 3 cut(s) 110, 240, 936
SetI ASST 9 cut(s) 41, 95, 272, 327, 346, 382, 535, 697, 961
SfaNI GCATC 1 cut(s) 1046
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 5 cut(s) 15, 29, 93, 362, 1178
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 194, 370
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 8 cut(s) 287, 357, 401, 435, 524, 732, 855, 1124
SseBI AGGCCT 1 cut(s) 100
SspI AATATT 1 cut(s) 1171
SspMI CTAG 2 cut(s) 377, 515
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 95, 306
TaaI ACNGT 2 cut(s) 676, 979
TaiI ACGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 135, 150, 227, 266
TasI AATT 8 cut(s) 287, 357, 401, 435, 524, 732, 855, 1124
TatI WGTACW 2 cut(s) 719, 938
TauI GCSGC 3 cut(s) 61, 249, 748
TfiI GAWTC 2 cut(s) 311, 1076
Tru1I TTAA 4 cut(s) 753, 843, 974, 1139
Tru9I TTAA 4 cut(s) 753, 843, 974, 1139
TscAI CASTG 3 cut(s) 679, 810, 869
TseFI GTSAC 2 cut(s) 34, 964
Tsp45I GTSAC 2 cut(s) 34, 964
TspDTI ATGAA 3 cut(s) 486, 630, 1068
TspGWI ACGGA 1 cut(s) 1140
TspRI CASTG 3 cut(s) 679, 810, 869
Tth111I GACNNNGTC 1 cut(s) 257
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 5 cut(s) 15, 29, 93, 362, 1178
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 3 cut(s) 435, 524, 855
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 377, 515
ZrmI AGTACT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.