Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0010850

Physical Location & Seq

Genomic Coordinates Reverse (-)

36538 .. 40744

Gene Structure 4207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgggaataacaacgcgcaaaaagaaaaagaatcccggagcgaatatcttatcccccaacaaaagagttgacgacgacaacgacgtcgccacttatgtgtttgaagcggtggacggtgatcctgtttcgattgcggtgcaccccagcggggacgacgtcgtttgctccacctccaatggtggctgcaaattgtttgagttatatgggccagaatcaaatgccaagctgttggcaagagaatcagctcctttgcaaggaattggtccacagaagtgtctagcttttagtgtcgatggatctaagttggctaccggtggtttggatgggcatatgagaattctggagtggccaagcctgtccataattttagatgaacctaaggcacataaatctgtccgtgatatggatttcagcttagactcagagttcttagcttcgacatctactgatggctcagcgagaatatggaagacggaagatggtgttcctgtgactactttgactcgcgactctgatgaaaagattgaactctgttgcttttctaaggatgggacaaaaccctttctattttgcacagttcaaaaaggtgcaaaagctttaacttctgtctgggacataagtacatggaagaaaattggacataaaaggctacttaaaaagtctgctgctgttatgtctgtcagcaaggatggaaaatatcttgctctgggaagcaaagatggagatatatgtgtggttgaagttaagaaaatggagatttgccactggagtaagaggctacacctgggaacttgcattgccactctagacttctgtcccactgaaagggttgtgctcaccacctctagtgaatggggagctgtggtgaccaagttaaatgttcctgcagattggaaagaatggcagatctatttgttgcttttagggctgtttttggcgtccgccgttgcattttatatcttctttgagaagtctgataatttttggaacttccctcttggaaaaaatcaaccagcaagacctgaattcggggcatttctaaaagattcacagccttctgacgatagaaacatttggggtcctgtagacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

364

Amino Acids

40.05

Weight (kDa)

6.34

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52190
fragaria_vesca	FvH4_7g06890 FvH4_7g06890
malus_domestica	MD02G1241000.v1.1 MD07G1075600.v1.1
prunus_persica	Prupe.2G096500_v2.0.a1
pyrus_communis	pycom02g20620 pycom07g05960
rosa_chinensis	RchiOBHm_Chr1g0336681 RchiOBHm_Chr1g0336701 RchiOBHm_Chr1g0336731
rosa_laevigata	RLG00000029338
rosa_multiflora	Rmu_sc0000907.1_g000011 Rmu_sc0011778.1_g000011 Rmu_sc0042619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315360
rosa_rugosa	Rorug01G0127500
rosa_samantha	Rh1CG140000 Rh1DG155600
rosa_wichuraiana	Rw1G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	2 cut(s)	87, 159
AccI	GTMKAC	1 cut(s)	1086
AccII	CGCG	2 cut(s)	16, 507
AciI	CCGC	4 cut(s)	107, 134, 147, 942
AclWI	GGATC	2 cut(s)	113, 304
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	336, 1025
AcyI	GRCGYC	3 cut(s)	84, 156, 938
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	5 cut(s)	148, 254, 403, 825, 1028
AflIII	ACRYGT	1 cut(s)	1089
AgeI	ACCGGT	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	104, 527, 581, 740
AjnI	CCWGG	1 cut(s)	783
AleI	CACNNNNGTG	2 cut(s)	95, 271
AluBI	AGCT	7 cut(s)	226, 245, 281, 414, 434, 596, 860
AluI	AGCT	7 cut(s)	226, 245, 281, 414, 434, 596, 860
Alw21I	GWGCWC	2 cut(s)	141, 837
Alw44I	GTGCAC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	113, 304
AoxI	GGCC	2 cut(s)	206, 347
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	183, 665
ApoI	RAATTY	2 cut(s)	336, 1025
AsiGI	ACCGGT	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	206, 263, 1079
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	128, 829, 877
AvaII	GGWCC	2 cut(s)	263, 1079
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	2 cut(s)	141, 837
BbvI	GCAGC	2 cut(s)	170, 652
BccI	CCATC	7 cut(s)	287, 317, 443, 473, 542, 683, 713
BceAI	ACGGC	1 cut(s)	929
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	785
BcnI	CCSGG	1 cut(s)	36
BfaI	CTAG	3 cut(s)	278, 806, 846
BfmI	CTRYAG	2 cut(s)	885, 1083
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	2 cut(s)	184, 666
BlpI	GCTNAGC	1 cut(s)	454
BlsI	GCNGC	2 cut(s)	185, 667
Bme1390I	CCNGG	2 cut(s)	36, 785
Bme18I	GGWCC	2 cut(s)	263, 1079
BmgT120I	GGNCC	3 cut(s)	206, 263, 1079
BmiI	GGNNCC	1 cut(s)	1080
BmrFI	CCNGG	2 cut(s)	36, 785
BoxI	GACNNNNGTC	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	2 cut(s)	362, 787
Bpu1102I	GCTNAGC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	3 cut(s)	84, 156, 938
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 254, 403, 825, 1028
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	770
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	3 cut(s)	328, 553, 694
BseLI	CCNNNNNNNGG	5 cut(s)	148, 254, 403, 825, 1028
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	435, 468
BseNI	ACTGG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	170, 652
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	16, 507
BshFI	GGCC	2 cut(s)	208, 349
BshTI	ACCGGT	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	141, 837
BsiSI	CCGG	2 cut(s)	36, 312
BslFI	GGGAC	4 cut(s)	164, 565, 626, 801
BslI	CCNNNNNNNGG	5 cut(s)	148, 254, 403, 825, 1028
BsmFI	GGGAC	4 cut(s)	164, 565, 626, 801
BsnI	GGCC	2 cut(s)	208, 349
Bsp1286I	GDGCHC	2 cut(s)	141, 837
Bsp143I	GATC	3 cut(s)	118, 296, 906
Bsp1720I	GCTNAGC	1 cut(s)	454
Bsp68I	TCGCGA	1 cut(s)	507
BspACI	CCGC	4 cut(s)	107, 134, 147, 942
BspANI	GGCC	2 cut(s)	208, 349
BspCNI	CTCAG	2 cut(s)	434, 467
BspFNI	CGCG	2 cut(s)	16, 507
BspLI	GGNNCC	1 cut(s)	1080
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	113, 304
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	3 cut(s)	118, 296, 906
BssNI	GRCGYC	3 cut(s)	84, 156, 938
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	2 cut(s)	116, 577
BstACI	GRCGYC	3 cut(s)	84, 156, 938
BstDEI	CTNAG	7 cut(s)	300, 378, 415, 421, 430, 454, 543
BstEII	GGTNACC	1 cut(s)	865
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	328, 553, 694
BstFNI	CGCG	2 cut(s)	16, 507
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	121, 299, 909
BstMBI	GATC	3 cut(s)	118, 296, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	925
BstNI	CCWGG	1 cut(s)	785
BstNSI	RCATGY	1 cut(s)	1093
BstPAI	GACNNNNGTC	1 cut(s)	813
BstPI	GGTNACC	1 cut(s)	865
BstSCI	CCNGG	2 cut(s)	34, 783
BstSFI	CTRYAG	2 cut(s)	885, 1083
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	16, 507
BstV1I	GCAGC	2 cut(s)	170, 652
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	296, 906
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	296, 906
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	208, 349
BtsCI	GGATG	3 cut(s)	328, 553, 694
BtsIMutI	CAGTG	2 cut(s)	763, 819
BtuMI	TCGCGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	206, 263, 1079
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	1 cut(s)	621
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	2 cut(s)	624, 1090
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	7 cut(s)	300, 378, 415, 421, 430, 454, 543
DpnI	GATC	3 cut(s)	120, 298, 908
DpnII	GATC	3 cut(s)	118, 296, 906
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	347
EciI	GGCGGA	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	263, 1079
Eco81I	CCTNAGG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	865
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	1079
EcoO65I	GGTNACC	1 cut(s)	865
EcoRI	GAATTC	2 cut(s)	336, 1025
EcoRII	CCWGG	1 cut(s)	783
FaeI	CATG	2 cut(s)	627, 1093
FaqI	GGGAC	4 cut(s)	164, 565, 626, 801
FatI	CATG	2 cut(s)	623, 1089
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	2 cut(s)	184, 666
FokI	GGATG	3 cut(s)	335, 560, 701
Fsp4HI	GCNGC	2 cut(s)	184, 666
FspBI	CTAG	3 cut(s)	278, 806, 846
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	184, 666
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	362, 787
HaeIII	GGCC	2 cut(s)	208, 349
HapII	CCGG	2 cut(s)	36, 312
HgaI	GACGC	1 cut(s)	927
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	3 cut(s)	84, 156, 938
Hin1II	CATG	2 cut(s)	627, 1093
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	7 cut(s)	31, 212, 239, 419, 502, 509, 1046
HpaII	CCGG	2 cut(s)	36, 312
HphI	GGTGA	3 cut(s)	128, 829, 877
Hpy166II	GTNNAC	5 cut(s)	70, 112, 139, 266, 1087
Hpy188I	TCNGA	4 cut(s)	424, 514, 976, 1060
Hpy188III	TCNNGA	3 cut(s)	341, 506, 806
Hpy8I	GTNNAC	5 cut(s)	70, 112, 139, 266, 1087
Hpy99I	CGWCG	5 cut(s)	77, 86, 89, 158, 161
HpyAV	CCTTC	1 cut(s)	1065
HpyCH4III	ACNGT	2 cut(s)	116, 577
HpyCH4IV	ACGT	2 cut(s)	84, 156
HpyCH4V	TGCA	8 cut(s)	139, 186, 253, 573, 590, 795, 887, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	925
HpyF3I	CTNAG	7 cut(s)	300, 378, 415, 421, 430, 454, 543
HpySE526I	ACGT	2 cut(s)	84, 156
Hsp92I	GRCGYC	3 cut(s)	84, 156, 938
Hsp92II	CATG	2 cut(s)	627, 1093
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	118, 296, 906
LmnI	GCTCC	4 cut(s)	38, 170, 250, 857
Lsp1109I	GCAGC	2 cut(s)	170, 652
MaeI	CTAG	3 cut(s)	278, 806, 846
MaeII	ACGT	2 cut(s)	84, 156
MaeIII	GTNAC	2 cut(s)	490, 865
MalI	GATC	3 cut(s)	120, 298, 908
MboI	GATC	3 cut(s)	118, 296, 906
MboII	GAAGA	4 cut(s)	481, 488, 640, 952
MflI	RGATCY	2 cut(s)	296, 906
MhlI	GDGCHC	2 cut(s)	141, 837
MlsI	TGGCCA	1 cut(s)	349
MluCI	AATT	7 cut(s)	188, 258, 336, 363, 633, 979, 1025
MluNI	TGGCCA	1 cut(s)	349
MlyI	GAGTC	3 cut(s)	413, 496, 503
MnlI	CCTC	4 cut(s)	181, 768, 853, 1005
Mox20I	TGGCCA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	4 cut(s)	599, 654, 744, 875
MslI	CAYNNNNRTG	2 cut(s)	95, 271
Msp20I	TGGCCA	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	36, 312
MspR9I	CCNGG	2 cut(s)	36, 785
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	2 cut(s)	16, 507
MwoI	GCNNNNNNNGC	1 cut(s)	925
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	3 cut(s)	118, 296, 906
NlaIII	CATG	2 cut(s)	627, 1093
NlaIV	GGNNCC	1 cut(s)	1080
NmuCI	GTSAC	2 cut(s)	490, 865
NruI	TCGCGA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	1093
OliI	CACNNNNGTG	2 cut(s)	95, 271
PciI	ACATGT	1 cut(s)	1089
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 81
PfeI	GAWTC	4 cut(s)	31, 212, 239, 1046
PflFI	GACNNNGTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	185, 667
PleI	GAGTC	3 cut(s)	413, 496, 503
PpsI	GAGTC	3 cut(s)	413, 496, 503
PpuMI	RGGWCCY	1 cut(s)	1079
PscI	ACATGT	1 cut(s)	1089
PshAI	GACNNNNGTC	1 cut(s)	813
Psp5II	RGGWCCY	1 cut(s)	1079
Psp6I	CCWGG	1 cut(s)	783
PspEI	GGTNACC	1 cut(s)	865
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	1080
PspPI	GGNCC	3 cut(s)	206, 263, 1079
PspPPI	RGGWCCY	1 cut(s)	1079
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	2 cut(s)	296, 906
PsyI	GACNNNGTC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	2 cut(s)	95, 271
SaqAI	TTAA	4 cut(s)	599, 654, 744, 875
SatI	GCNGC	2 cut(s)	184, 666
Sau3AI	GATC	3 cut(s)	118, 296, 906
Sau96I	GGNCC	3 cut(s)	206, 263, 1079
SchI	GAGTC	3 cut(s)	413, 496, 503
ScrFI	CCNGG	2 cut(s)	36, 785
SduI	GDGCHC	2 cut(s)	141, 837
SfcI	CTRYAG	2 cut(s)	885, 1083
SinI	GGWCC	2 cut(s)	263, 1079
SmiMI	CAYNNNNRTG	2 cut(s)	95, 271
Sse9I	AATT	7 cut(s)	188, 258, 336, 363, 633, 979, 1025
SsiI	CCGC	4 cut(s)	107, 134, 147, 942
SspMI	CTAG	3 cut(s)	278, 806, 846
StyD4I	CCNGG	2 cut(s)	34, 783
TaaI	ACNGT	2 cut(s)	116, 577
TaiI	ACGT	2 cut(s)	87, 159
TaqI	TCGA	3 cut(s)	128, 291, 437
TasI	AATT	7 cut(s)	188, 258, 336, 363, 633, 979, 1025
TatI	WGTACW	1 cut(s)	620
TfiI	GAWTC	4 cut(s)	31, 212, 239, 1046
Tru1I	TTAA	4 cut(s)	599, 654, 744, 875
Tru9I	TTAA	4 cut(s)	599, 654, 744, 875
TscAI	CASTG	2 cut(s)	770, 826
TseFI	GTSAC	2 cut(s)	490, 865
TseI	GCWGC	2 cut(s)	183, 665
Tsp45I	GTSAC	2 cut(s)	490, 865
TspDTI	ATGAA	2 cut(s)	387, 531
TspGWI	ACGGA	2 cut(s)	386, 488
TspRI	CASTG	2 cut(s)	770, 826
Tth111I	GACNNNGTC	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	263, 1079
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	336, 1025
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	1 cut(s)	1093
XmiI	GTMKAC	1 cut(s)	1086
XspI	CTAG	3 cut(s)	278, 806, 846
ZraI	GACGTC	2 cut(s)	85, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.