Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010850

Physical Location & Seq

Genomic Coordinates Reverse (-)

30483484 .. 30487742

Gene Structure 4259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGGGAGGCGGGTCGGAGCAGCAACAGGGTACAGTGACGTGCGGGTCGTGGATCCGGCGACCCGAGAACATGAATTGGGTGGTGTTCGGGAGGTCCAGGGGTAAAGAAGACTCCAGTTCAGTTCTGACCATCTTCTCCTTCGACCCCAAGACCACTTGTCTCTCTTCTTCTCCTCTGGCCACTTATGTGTTTGAAGCGGTGGACGGTGATCCTGTTTCGATTGCGGTGCACCCCAGCGGGGACGACGTCGTTTGCTCCACCTCCAATGGTGGCTGCAAATTGTTTGAGTTATATGGGCCAGAATCAAATGCCAAGCTGTTGGCAAGAGAATCAGCTCCTTTGCAAGGAATTGGTCCGCAGAAGTGTCTAGCTTTTAGTGTTGATGGATCTAAGTTGGCTACTGGCGGTTTGGATGGGCATATGAGAATTCTGGAGTGGCCAAGCCTGTCCATAATTTTAGATGAACCTAAGGCGCATAAATCTGTCCGTGATATGGATTTCAGCTTAGACTCAGAGTTCTTAGCTTCGACATCTACTGATGGCTCAGCGAGAATATGGAAGACAGAAGATGGTGTTCCTGTGACTACTTTGACTCGCGACTCTGATGAAAAGATTGAACTCTGTTGCTTTTCTAAGGATGGGACAAAACCCTTTCTATTTTGCACAGTTCAAAAAGAATGGCAGATCTATTTGTTGCTTTTAGGGCTGTTTTTGGCGTCCGCCGTTGCATTTTATATCTTCTTTGAGAAGTCTGATAATTTTTGGAACTTCCCTCTTGGAAAAAATCAACCAGCAAGACCTGAATTCGGGGCATTTCTAAAAGATTCACAGCCTTCTGACGATAGAAACATTTGGGGTCCTGTAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

291

Amino Acids

31.94

Weight (kDa)

4.76

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	62 - 216	4.3e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	70 - 215	6.7e-12	THOC3 beta-propeller domain
WDR55	PF24796	70 - 211	1.9e-08	WDR55
Beta-prop_WDR3_1st	PF25173	74 - 214	1.6e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	75 - 216	3e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	75 - 198	2.9e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	123 - 225	1.9e-12	WDR5 beta-propeller domain
WD40	PF00400	158 - 187	3.9e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52190
fragaria_vesca	FvH4_7g06890 FvH4_7g06890
malus_domestica	MD02G1241000.v1.1 MD07G1075600.v1.1
prunus_persica	Prupe.2G096500_v2.0.a1
pyrus_communis	pycom02g20620 pycom07g05960
rosa_chinensis	RchiOBHm_Chr1g0336681 RchiOBHm_Chr1g0336701 RchiOBHm_Chr1g0336731
rosa_laevigata	RLG00000029338
rosa_multiflora	Rmu_sc0000907.1_g000011 Rmu_sc0011778.1_g000011 Rmu_sc0042619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315360
rosa_rugosa	Rorug01G0127500
rosa_samantha	Rh1CG140000 Rh1DG155600
rosa_wichuraiana	Rw1G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	867
AccII	CGCG	1 cut(s)	600
AciI	CCGC	8 cut(s)	12, 45, 200, 227, 240, 359, 408, 723
AclWI	GGATC	4 cut(s)	49, 62, 206, 397
AcoI	YGGCCR	2 cut(s)	180, 440
AcsI	RAATTY	2 cut(s)	429, 806
AcyI	GRCGYC	2 cut(s)	249, 719
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	4 cut(s)	241, 347, 496, 809
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	3 cut(s)	197, 620, 674
AhdI	GACNNNNNGTC	1 cut(s)	159
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	319, 338, 374, 507, 527
AluI	AGCT	5 cut(s)	319, 338, 374, 507, 527
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	4 cut(s)	49, 62, 206, 397
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	180, 299, 440
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	22, 276
ApoI	RAATTY	2 cut(s)	429, 806
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	4 cut(s)	96, 299, 356, 860
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	3 cut(s)	96, 356, 860
AxyI	CCTNAGG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	2 cut(s)	182, 442
BamHI	GGATCC	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	117, 569
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	34, 263
BccI	CCATC	6 cut(s)	140, 380, 410, 536, 566, 635
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	864
BglII	AGATCT	1 cut(s)	687
BisI	GCNGC	2 cut(s)	23, 277
BlpI	GCTNAGC	1 cut(s)	547
BlsI	GCNGC	2 cut(s)	24, 278
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	3 cut(s)	96, 356, 860
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	4 cut(s)	96, 299, 356, 860
BmiI	GGNNCC	2 cut(s)	56, 861
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	2 cut(s)	117, 569
BpmI	CTGGAG	2 cut(s)	100, 455
Bpu1102I	GCTNAGC	1 cut(s)	547
BsaHI	GRCGYC	2 cut(s)	249, 719
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 347, 496, 809
Bse1I	ACTGG	2 cut(s)	117, 409
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	421, 646
BseLI	CCNNNNNNNGG	4 cut(s)	241, 347, 496, 809
BseMII	CTCAG	2 cut(s)	528, 561
BseNI	ACTGG	2 cut(s)	117, 409
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	34, 263
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	182, 301, 442
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	257, 658
BslI	CCNNNNNNNGG	4 cut(s)	241, 347, 496, 809
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	257, 658
BsnI	GGCC	3 cut(s)	182, 301, 442
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	54, 211, 389, 687
Bsp1720I	GCTNAGC	1 cut(s)	547
Bsp68I	TCGCGA	1 cut(s)	600
BspACI	CCGC	8 cut(s)	12, 45, 200, 227, 240, 359, 408, 723
BspANI	GGCC	3 cut(s)	182, 301, 442
BspCNI	CTCAG	2 cut(s)	527, 560
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	56, 861
BspPI	GGATC	4 cut(s)	49, 62, 206, 397
BsrI	ACTGG	2 cut(s)	117, 409
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	4 cut(s)	54, 211, 389, 687
BssNI	GRCGYC	2 cut(s)	249, 719
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	37, 209, 670
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	2 cut(s)	249, 719
BstDEI	CTNAG	7 cut(s)	393, 471, 508, 514, 523, 547, 636
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	421, 646
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	57, 214, 392, 690
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	54, 211, 389, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	864
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	34, 263
BstV2I	GAAGAC	2 cut(s)	117, 569
BstX2I	RGATCY	3 cut(s)	54, 389, 687
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	3 cut(s)	54, 389, 687
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	182, 301, 442
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	421, 646
BtsIMutI	CAGTG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	600
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	4 cut(s)	96, 299, 356, 860
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	73, 871
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	7 cut(s)	393, 471, 508, 514, 523, 547, 636
DpnI	GATC	4 cut(s)	56, 213, 391, 689
DpnII	GATC	4 cut(s)	54, 211, 389, 687
DrdI	GACNNNNNNGTC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	180, 440
Eam1104I	CTCTTC	1 cut(s)	172
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	712
Eco47I	GGWCC	3 cut(s)	96, 356, 860
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	2 cut(s)	429, 806
EcoRII	CCWGG	1 cut(s)	98
FaeI	CATG	2 cut(s)	76, 874
FaqI	GGGAC	2 cut(s)	257, 658
FatI	CATG	2 cut(s)	72, 870
FauI	CCCGC	3 cut(s)	5, 38, 233
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	23, 277
FokI	GGATG	2 cut(s)	428, 653
Fsp4HI	GCNGC	2 cut(s)	23, 277
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	2 cut(s)	23, 277
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	2 cut(s)	100, 455
HaeIII	GGCC	3 cut(s)	182, 301, 442
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	2 cut(s)	249, 719
Hin1II	CATG	2 cut(s)	76, 874
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	7 cut(s)	113, 305, 332, 512, 595, 602, 827
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	205, 232, 868
Hpy188I	TCNGA	6 cut(s)	19, 129, 517, 607, 757, 841
Hpy188III	TCNNGA	3 cut(s)	91, 434, 599
Hpy8I	GTNNAC	3 cut(s)	205, 232, 868
Hpy99I	CGWCG	2 cut(s)	251, 254
HpyAV	CCTTC	2 cut(s)	151, 846
HpyCH4III	ACNGT	3 cut(s)	37, 209, 670
HpyCH4IV	ACGT	2 cut(s)	41, 249
HpyCH4V	TGCA	5 cut(s)	232, 279, 346, 666, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	7 cut(s)	393, 471, 508, 514, 523, 547, 636
HpySE526I	ACGT	2 cut(s)	41, 249
Hsp92I	GRCGYC	2 cut(s)	249, 719
Hsp92II	CATG	2 cut(s)	76, 874
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	54, 211, 389, 687
LmnI	GCTCC	3 cut(s)	19, 263, 343
Lsp1109I	GCAGC	2 cut(s)	34, 263
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	2 cut(s)	41, 249
MaeIII	GTNAC	2 cut(s)	37, 583
MalI	GATC	4 cut(s)	56, 213, 391, 689
MboI	GATC	4 cut(s)	54, 211, 389, 687
MboII	GAAGA	7 cut(s)	122, 127, 159, 162, 574, 581, 733
MflI	RGATCY	3 cut(s)	54, 389, 687
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	2 cut(s)	182, 442
MluCI	AATT	7 cut(s)	76, 281, 351, 429, 456, 760, 806
MluNI	TGGCCA	2 cut(s)	182, 442
MlyI	GAGTC	4 cut(s)	107, 506, 589, 596
MnlI	CCTC	4 cut(s)	87, 186, 274, 786
Mox20I	TGGCCA	2 cut(s)	182, 442
MscI	TGGCCA	2 cut(s)	182, 442
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	2 cut(s)	182, 442
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	706
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	4 cut(s)	54, 211, 389, 687
NlaIII	CATG	2 cut(s)	76, 874
NlaIV	GGNNCC	2 cut(s)	56, 861
NmuCI	GTSAC	2 cut(s)	37, 583
NruI	TCGCGA	1 cut(s)	600
NspI	RCATGY	1 cut(s)	874
OliI	CACNNNNGTG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	305, 332, 827
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	24, 278
PleI	GAGTC	4 cut(s)	107, 506, 589, 596
PpsI	GAGTC	4 cut(s)	107, 506, 589, 596
PpuMI	RGGWCCY	1 cut(s)	860
PscI	ACATGT	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	56, 861
PspPI	GGNCC	4 cut(s)	96, 299, 356, 860
PspPPI	RGGWCCY	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	54, 389, 687
PsyI	GACNNNGTC	1 cut(s)	248
RruI	TCGCGA	1 cut(s)	600
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	188
SatI	GCNGC	2 cut(s)	23, 277
Sau3AI	GATC	4 cut(s)	54, 211, 389, 687
Sau96I	GGNCC	4 cut(s)	96, 299, 356, 860
SchI	GAGTC	4 cut(s)	107, 506, 589, 596
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	3 cut(s)	96, 356, 860
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	7 cut(s)	76, 281, 351, 429, 456, 760, 806
SsiI	CCGC	8 cut(s)	12, 45, 200, 227, 240, 359, 408, 723
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	37, 209, 670
TaiI	ACGT	2 cut(s)	44, 252
TaqI	TCGA	3 cut(s)	144, 221, 530
TasI	AATT	7 cut(s)	76, 281, 351, 429, 456, 760, 806
TfiI	GAWTC	3 cut(s)	305, 332, 827
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	37, 583
TseI	GCWGC	2 cut(s)	22, 276
Tsp45I	GTSAC	2 cut(s)	37, 583
TspDTI	ATGAA	3 cut(s)	89, 480, 624
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	96, 356, 860
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	2 cut(s)	429, 806
XceI	RCATGY	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	867
XspI	CTAG	1 cut(s)	371
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.