pycom02g20620

SEC12-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
18718364 .. 18722653
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20620.3

Sequence Viewer

Length: 1188 bp
ATGGCGAGCGGTGGGTCCGATCATCAGGGTCCCGTCACGTGCGGGTCGTGGATCCGCCGTTCCGAAAACGCCAATTGGGTGGTGTTTGGGAGGTCCAGGGCTAAGGACTCCCCTTCTTCCTCTTCGTCAGTTCTCGAGATCTTCTCCTTCGACCCCAAGACCACTTCTCACTCCTCCTCTCCCCTGACGACGTATGTGCTTGAAGAAGTGGAGGGTGACGTAGTTTCGATTGCGGTGCACCCAAGCGGCGACGACGTCGTTTGCTCTACCTCTAATGGTGGCTGCAGATCGTTTGAGTTATATGGCCAAGAATCAACAGCAAAGCTGCTGGCAAAAGAACTACCTCCTCTGCAAGGAATTGGTCCCCAGAATTGTCTAGCTTTTAGTGTTGATGGATCTAAATTAGCTACTGGCGGTGCGGATGGGCATTTGAGAATTTTGGAGTGGCCAAGCCTGCGAATAATCTTAGATGAACCAAAAGCGCATAAGTCTGTGCGTGATATGGATTTCAGCCTAGACTCCGAGTTCCTAGCTTCAACATCTACTGATGGCTCAGCAAGAATATGGAAGCTGGAAGATGGTGTTTTGACTACTTTGACTCGCAACTCGGATGAAAAGATTGAACTCTGCCGGTTTTCCAAAGATGGGACAAAACCCTTTCTGTTTTGCACTGTTCAAAAAGGCGATAAAGCTCTCACTGCAGTTTGGGACATAAGTACATGGAGTAAAATTGGGCATAAGCGGCTACTTAAAAAGTCTGCTTCTGTTATGTCTGTTAGCAAAGATGGGAAATATCTTGCACTGGGAAGCAAAGATGGTGATATATGCGTGGTTGAAGTCAAGAAAATGGAAATTTGCCACTGGAGTAAGAGGCTACATCTGGGTACAGGCATTGAAACTCTGGAGTTCTGTCCAACTGAAAGGGTTGTGCTTACTACTTCTAATCAATGGGGAGCTGTGGTGACTAAGTTAAATGTTCCAGCAGATTGGAAAGAGTGGCAGATCTATCTGGTGCTTTTAGGGATGTTTTTGGCATCCGCTGTCGCATTTTACATCTTCTTTGAGAACTCTGATTCATTTTGGAACTTCCCTCTTGGAAGAAATCAACCAGGAAGACCGCAACTCGGAGCTTTTTTAGAGTCTCCGCCTTCTGATGATAGAAATATTTGGGGTCCGGTAGACATGTGA

Protein Analysis

396

Amino Acids

43.38

Weight (kDa)

5.82

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 1179
AclWI GGATC 3 cut(s) 46, 59, 403
AcoI YGGCCR 2 cut(s) 304, 446
AcsI RAATTY 2 cut(s) 435, 852
AcvI CACGTG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 718, 886
AfiI CCNNNNNNNGG 3 cut(s) 353, 645, 1124
AflIII ACRYGT 1 cut(s) 1182
AgsI TTSAA 6 cut(s) 203, 537, 623, 677, 836, 896
AjnI CCWGG 2 cut(s) 95, 1108
AloI GAACNNNNNNTCC 2 cut(s) 43, 75
AluBI AGCT 8 cut(s) 325, 380, 407, 533, 571, 692, 956, 1130
AluI AGCT 8 cut(s) 325, 380, 407, 533, 571, 692, 956, 1130
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 1146
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 3 cut(s) 46, 59, 403
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 304, 446
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 282, 325
ApoI RAATTY 2 cut(s) 435, 852
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 5 cut(s) 15, 29, 93, 362, 1172
AsuHPI GGTGA 3 cut(s) 227, 830, 973
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 5 cut(s) 15, 29, 93, 362, 1172
BaeGI GKGCMC 1 cut(s) 240
BalI TGGCCA 2 cut(s) 306, 448
BamHI GGATCC 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 1120
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 269, 312
BccI CCATC 7 cut(s) 386, 416, 542, 572, 638, 779, 809
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 217, 251
BciT130I CCWGG 2 cut(s) 97, 1110
BcoDI GTCTC 1 cut(s) 1146
BfaI CTAG 3 cut(s) 377, 515, 530
BfmI CTRYAG 2 cut(s) 283, 699
BglII AGATCT 2 cut(s) 138, 1002
BisI GCNGC 4 cut(s) 247, 283, 326, 743
BlpI GCTNAGC 1 cut(s) 553
BlsI GCNGC 4 cut(s) 248, 284, 327, 744
Bme1390I CCNGG 2 cut(s) 97, 1110
Bme18I GGWCC 5 cut(s) 15, 29, 93, 362, 1172
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 5 cut(s) 15, 29, 93, 362, 1172
BmiI GGNNCC 6 cut(s) 16, 30, 31, 53, 364, 1173
BmrFI CCNGG 2 cut(s) 97, 1110
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 1 cut(s) 1043
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 1120
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 2 cut(s) 883, 923
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 553
BsaAI YACGTR 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 1174
BsaXI ACNNNNNCTCC 2 cut(s) 945, 975
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 645, 1124
Bse118I RCCGGY 1 cut(s) 630
Bse1I ACTGG 3 cut(s) 415, 807, 866
BseBI CCWGG 2 cut(s) 97, 1110
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 427, 616, 1029, 1034
BseLI CCNNNNNNNGG 3 cut(s) 353, 645, 1124
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 3 cut(s) 415, 807, 866
BseRI GAGGAG 3 cut(s) 163, 166, 336
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 269, 312
BshFI GGCC 2 cut(s) 306, 448
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 631, 1175
BslFI GGGAC 4 cut(s) 15, 348, 661, 722
BslI CCNNNNNNNGG 3 cut(s) 353, 645, 1124
BsmAI GTCTC 1 cut(s) 1146
BsmFI GGGAC 4 cut(s) 15, 348, 661, 722
BsnI GGCC 2 cut(s) 306, 448
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
Bsp1720I GCTNAGC 1 cut(s) 553
BspANI GGCC 2 cut(s) 306, 448
BspCNI CTCAG 1 cut(s) 566
BspLI GGNNCC 6 cut(s) 16, 30, 31, 53, 364, 1173
BspMAI CTGCAG 2 cut(s) 287, 703
BspPI GGATC 3 cut(s) 46, 59, 403
BsrBI CCGCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 630
BsrI ACTGG 3 cut(s) 415, 807, 866
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 97, 1110
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 7, 330, 455
BstDEI CTNAG 4 cut(s) 102, 466, 553, 966
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 4 cut(s) 427, 616, 1029, 1034
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 6 cut(s) 22, 54, 141, 290, 398, 1005
BstMAI GTCTC 1 cut(s) 1146
BstMBI GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 454, 698, 742
BstNI CCWGG 2 cut(s) 97, 1110
BstNSI RCATGY 1 cut(s) 1186
BstSCI CCNGG 2 cut(s) 95, 1108
BstSFI CTRYAG 2 cut(s) 283, 699
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 269, 312
BstV2I GAAGAC 1 cut(s) 1120
BstX2I RGATCY 4 cut(s) 51, 138, 395, 1002
BstXI CCANNNNNNTGG 2 cut(s) 79, 987
BstYI RGATCY 4 cut(s) 51, 138, 395, 1002
BsuRI GGCC 2 cut(s) 306, 448
BtsCI GGATG 4 cut(s) 427, 616, 1029, 1034
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 4 cut(s) 669, 696, 800, 859
Cac8I GCNNGC 3 cut(s) 7, 330, 455
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 630
Cfr13I GGNCC 5 cut(s) 15, 29, 93, 362, 1172
Csp6I GTAC 2 cut(s) 717, 885
CviAII CATG 2 cut(s) 720, 1183
CviQI GTAC 2 cut(s) 717, 885
DdeI CTNAG 4 cut(s) 102, 466, 553, 966
DpnI GATC 6 cut(s) 21, 53, 140, 289, 397, 1004
DpnII GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
EaeI YGGCCR 2 cut(s) 304, 446
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 2 cut(s) 44, 1134
Eco47I GGWCC 5 cut(s) 15, 29, 93, 362, 1172
Eco72I CACGTG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 95, 1108
FaeI CATG 2 cut(s) 723, 1186
FaqI GGGAC 4 cut(s) 15, 348, 661, 722
FatI CATG 2 cut(s) 719, 1182
FauI CCCGC 1 cut(s) 35
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 4 cut(s) 247, 283, 326, 743
FokI GGATG 4 cut(s) 434, 623, 1021, 1036
Fsp4HI GCNGC 4 cut(s) 247, 283, 326, 743
FspBI CTAG 3 cut(s) 377, 515, 530
GlaI GCGC 1 cut(s) 483
GluI GCNGC 4 cut(s) 247, 283, 326, 743
GsuI CTGGAG 2 cut(s) 883, 923
HaeIII GGCC 2 cut(s) 306, 448
HapII CCGG 2 cut(s) 631, 1175
HhaI GCGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 723, 1186
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HinfI GANTC 6 cut(s) 107, 311, 518, 598, 1073, 1139
HpaII CCGG 2 cut(s) 631, 1175
HphI GGTGA 3 cut(s) 227, 830, 973
Hpy166II GTNNAC 2 cut(s) 238, 1180
Hpy188I TCNGA 7 cut(s) 19, 64, 523, 610, 1072, 1127, 1153
Hpy188III TCNNGA 4 cut(s) 134, 136, 841, 902
Hpy8I GTNNAC 2 cut(s) 238, 1180
Hpy99I CGWCG 4 cut(s) 193, 254, 257, 260
HpyAV CCTTC 3 cut(s) 123, 157, 1158
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 4 cut(s) 38, 191, 219, 255
HpyCH4V TGCA 6 cut(s) 238, 285, 352, 669, 701, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 698, 742
HpyF3I CTNAG 4 cut(s) 102, 466, 553, 966
HpySE526I ACGT 4 cut(s) 38, 191, 219, 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 723, 1186
HspAI GCGC 1 cut(s) 482
KflI GGGWCCC 1 cut(s) 29
Kzo9I GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
LmnI GCTCC 2 cut(s) 953, 1127
Lsp1109I GCAGC 2 cut(s) 269, 312
LweI GCATC 1 cut(s) 1043
MaeI CTAG 3 cut(s) 377, 515, 530
MaeII ACGT 4 cut(s) 38, 191, 219, 255
MaeIII GTNAC 3 cut(s) 34, 215, 961
MalI GATC 6 cut(s) 21, 53, 140, 289, 397, 1004
MbiI CCGCTC 1 cut(s) 9
MboI GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
MboII GAAGA 8 cut(s) 108, 114, 133, 215, 587, 1048, 1110, 1125
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 4 cut(s) 51, 138, 395, 1002
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 2 cut(s) 306, 448
MluCI AATT 7 cut(s) 73, 357, 370, 401, 435, 729, 852
MluNI TGGCCA 2 cut(s) 306, 448
MlyI GAGTC 4 cut(s) 101, 512, 592, 1148
MmeI TCCRAC 1 cut(s) 938
Mox20I TGGCCA 2 cut(s) 306, 448
MscI TGGCCA 2 cut(s) 306, 448
MseI TTAA 2 cut(s) 750, 971
Msp20I TGGCCA 2 cut(s) 306, 448
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 2 cut(s) 631, 1175
MspR9I CCNGG 2 cut(s) 97, 1110
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 2 cut(s) 97, 1110
MwoI GCNNNNNNNGC 3 cut(s) 454, 698, 742
NdeII GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
NlaIII CATG 2 cut(s) 723, 1186
NlaIV GGNNCC 6 cut(s) 16, 30, 31, 53, 364, 1173
NmuCI GTSAC 3 cut(s) 34, 215, 961
NspI RCATGY 1 cut(s) 1186
PaeR7I CTCGAG 1 cut(s) 134
PciI ACATGT 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 2 cut(s) 311, 1073
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 248, 284, 327, 744
PleI GAGTC 4 cut(s) 101, 512, 592, 1147
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 4 cut(s) 101, 512, 592, 1147
Ppu21I YACGTR 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 29
PscI ACATGT 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 95, 1108
PspCI CACGTG 1 cut(s) 39
PspGI CCWGG 2 cut(s) 95, 1108
PspN4I GGNNCC 6 cut(s) 16, 30, 31, 53, 364, 1173
PspPI GGNCC 5 cut(s) 15, 29, 93, 362, 1172
PspPPI RGGWCCY 1 cut(s) 29
PstI CTGCAG 2 cut(s) 287, 703
PsuI RGATCY 4 cut(s) 51, 138, 395, 1002
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 2 cut(s) 718, 886
RsaNI GTAC 2 cut(s) 717, 885
SaqAI TTAA 2 cut(s) 750, 971
SatI GCNGC 4 cut(s) 247, 283, 326, 743
Sau3AI GATC 6 cut(s) 19, 51, 138, 287, 395, 1002
Sau96I GGNCC 5 cut(s) 15, 29, 93, 362, 1172
SchI GAGTC 4 cut(s) 101, 512, 592, 1148
ScrFI CCNGG 2 cut(s) 97, 1110
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 1 cut(s) 1043
SfcI CTRYAG 2 cut(s) 283, 699
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 5 cut(s) 15, 29, 93, 362, 1172
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 7 cut(s) 73, 357, 370, 401, 435, 729, 852
SspI AATATT 1 cut(s) 1165
SspMI CTAG 3 cut(s) 377, 515, 530
StyD4I CCNGG 2 cut(s) 95, 1108
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 4 cut(s) 41, 194, 222, 258
TaqI TCGA 3 cut(s) 135, 150, 227
TasI AATT 7 cut(s) 73, 357, 370, 401, 435, 729, 852
TatI WGTACW 1 cut(s) 716
TauI GCSGC 2 cut(s) 249, 745
TfiI GAWTC 2 cut(s) 311, 1073
Tru1I TTAA 2 cut(s) 750, 971
Tru9I TTAA 2 cut(s) 750, 971
TscAI CASTG 4 cut(s) 676, 703, 807, 866
TseFI GTSAC 3 cut(s) 34, 215, 961
TseI GCWGC 2 cut(s) 282, 325
Tsp45I GTSAC 3 cut(s) 34, 215, 961
TspDTI ATGAA 3 cut(s) 486, 627, 1065
TspRI CASTG 4 cut(s) 676, 703, 807, 866
Tth111I GACNNNGTC 1 cut(s) 254
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 5 cut(s) 15, 29, 93, 362, 1172
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 2 cut(s) 435, 852
XceI RCATGY 1 cut(s) 1186
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 1179
XspI CTAG 3 cut(s) 377, 515, 530
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.