AT3G52370

fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
19417372 .. 19419913
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52370.1

Sequence Viewer

Length: 1311 bp
ATGGATGATCTCTCCAAGCTTCTCTTCTTCCTCCTCCTCACTATCTCCATTACCACCGCATTACCCGATAAACCCGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTTGCTCTTCTTGACTCACACTACACAGAACTAGCAGAGCTCGTCGAAAAAGCTCTTCTTCTCCAAACCTTAGAAGAAGCTGTTGGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGAAAAAAATCTTGATCCTGAATTCAAATCTTTCTTACTCCAACCGAAAAACCTCAAATCATTACAATCTTTATTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCACAATTCTCCTCCGCCGTCGTTAGCCACCGTACTCTCTCCAACGACCACCTCCATTTCACCAACGGAAAAGTCAACTCCGCTGAAATAACCAAACCCGATGATTTAACTCGTCCCGATGGAATCATCCACGGAATCGAACGTCTTTTAATCCCACGTTCTGTTCAAGAAGATTTCAACCGCCGTCGTAGTCTCCGTTCAATCGCTGCCGTATTACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTCACCGTCTCAAGAAAAAGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTTCCGGTTTACGACGCAATGTCACCTGGTCCGTCACTAGCTCCGGCTCCGGCACCAGGACCGGGTGGGCCACGCCACCATTTCAACGGAGAGGCTCAAGTTAAAGATTTTATCCACACGCTTCTTCATTACGGTGGCTACAATGAAATGGCAGATATTCTCGTTAATCTCACTTCTTTAGCCACCGAGATGGGTCGGCTCGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCACCAAACGACGAAGCTATGGCTAAATTGACCACGGACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTATGTATTATCACATCATACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCCGGTTTGGGAAAATCCGGTACGATTCACTCCGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAAGTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACCGATGGACGGATTTCGGTTCAAGGGATTGACGGTGTTTTGTTCCCGGAGGAAAAAACTCCGGTCGAGAAGAAAACCGGCGTTCCAGTTGTCAAGAAAGCACCTAAACCAAGAAGAGGTAAATTGATGGAAGTAGCATGTACAATGCTGGGATCACAATTTCCAACATGTCAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

48.07

Weight (kDa)

6.22

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 43 - 167 1.6e-21 Fasciclin domain
Fasciclin PF02469 284 - 394 4.9e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 697
AciI CCGC 5 cut(s) 57, 360, 426, 526, 627
AclWI GGATC 4 cut(s) 245, 578, 1115, 1294
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 5 cut(s) 379, 995, 1005, 1028, 1276
AfiI CCNNNNNNNGG 5 cut(s) 80, 701, 707, 1143, 1250
AflIII ACRYGT 1 cut(s) 1301
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 6 cut(s) 262, 512, 523, 546, 730, 1157
AhdI GACNNNNNGTC 1 cut(s) 664
AjnI CCWGG 2 cut(s) 670, 700
AjuI GAANNNNNNNTTGG 4 cut(s) 8, 40, 174, 206
AluBI AGCT 8 cut(s) 19, 148, 161, 188, 635, 686, 893, 935
AluI AGCT 8 cut(s) 19, 148, 161, 188, 635, 686, 893, 935
Alw21I GWGCWC 4 cut(s) 150, 574, 637, 937
Alw26I GTCTC 2 cut(s) 542, 605
AlwI GGATC 4 cut(s) 245, 578, 1115, 1294
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 713
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 257
AseI ATTAAT 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 4 cut(s) 674, 704, 713, 913
AsuC2I CCSGG 5 cut(s) 75, 76, 708, 930, 1181
AsuHPI GGTGA 4 cut(s) 397, 587, 660, 1109
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 3 cut(s) 674, 704, 913
BanI GGYRCC 1 cut(s) 697
BanII GRGCYC 3 cut(s) 150, 637, 937
BauI CACGAG 1 cut(s) 845
Bbv12I GWGCWC 4 cut(s) 150, 574, 637, 937
BbvI GCAGC 1 cut(s) 538
BccI CCATC 6 cut(s) 458, 829, 1067, 1094, 1133, 1255
BceAI ACGGC 3 cut(s) 347, 513, 539
BcgI CGANNNNNNTGC 2 cut(s) 1059, 1093
BciT130I CCWGG 2 cut(s) 672, 702
BcnI CCSGG 5 cut(s) 75, 76, 708, 930, 1181
BcoDI GTCTC 2 cut(s) 542, 605
BfaI CTAG 2 cut(s) 140, 683
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 7 cut(s) 75, 76, 672, 702, 708, 930, 1181
Bme18I GGWCC 3 cut(s) 674, 704, 913
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 4 cut(s) 674, 704, 713, 913
BmiI GGNNCC 2 cut(s) 693, 699
BmrFI CCNGG 7 cut(s) 75, 76, 672, 702, 708, 930, 1181
BmsI GCATC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 587, 726
BpuMI CCSGG 5 cut(s) 75, 76, 708, 930, 1181
BsaJI CCNNGG 3 cut(s) 74, 475, 909
BsaWI WCCGGW 8 cut(s) 562, 574, 640, 649, 967, 1023, 1038, 1195
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 701, 707, 1143, 1250
Bse118I RCCGGY 3 cut(s) 640, 1008, 1211
Bse1I ACTGG 1 cut(s) 1220
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 672, 702
BseDI CCNNGG 3 cut(s) 74, 475, 909
BseGI GGATG 2 cut(s) 10, 471
BseLI CCNNNNNNNGG 5 cut(s) 80, 701, 707, 1143, 1250
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 1076
BseNI ACTGG 1 cut(s) 1220
BseRI GAGGAG 4 cut(s) 23, 26, 210, 346
BseXI GCAGC 1 cut(s) 538
BseYI CCCAGC 1 cut(s) 1282
Bsh1285I CGRYCG 1 cut(s) 1200
BshFI GGCC 1 cut(s) 715
BshNI GGYRCC 1 cut(s) 697
BshTI ACCGGT 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 1200
BsiHKAI GWGCWC 4 cut(s) 150, 574, 637, 937
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 5 cut(s) 80, 701, 707, 1143, 1250
BsmAI GTCTC 2 cut(s) 542, 605
BsmBI CGTCTC 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 715
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 4 cut(s) 150, 574, 637, 937
Bsp1407I TGTACA 2 cut(s) 993, 1274
Bsp143I GATC 5 cut(s) 7, 250, 583, 1120, 1286
BspACI CCGC 5 cut(s) 57, 360, 426, 526, 627
BspANI GGCC 1 cut(s) 715
BspCNI CTCAG 1 cut(s) 1075
BspLI GGNNCC 2 cut(s) 693, 699
BspPI GGATC 4 cut(s) 245, 578, 1115, 1294
BspQI GCTCTTC 2 cut(s) 120, 168
BspT107I GGYRCC 1 cut(s) 697
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 3 cut(s) 640, 1008, 1211
BsrGI TGTACA 2 cut(s) 993, 1274
BsrI ACTGG 1 cut(s) 1220
BssAI RCCGGY 3 cut(s) 640, 1008, 1211
BssECI CCNNGG 3 cut(s) 74, 475, 909
BssMI GATC 5 cut(s) 7, 250, 583, 1120, 1286
BssSI CACGAG 1 cut(s) 845
Bst2BI CACGAG 1 cut(s) 845
Bst2UI CCWGG 2 cut(s) 672, 702
Bst4CI ACNGT 5 cut(s) 377, 599, 779, 871, 1169
Bst6I CTCTTC 5 cut(s) 29, 120, 168, 978, 1243
BstAUI TGTACA 2 cut(s) 993, 1274
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 3 cut(s) 178, 235, 1062
BstDSI CCRYGG 2 cut(s) 475, 909
BstF5I GGATG 2 cut(s) 10, 471
BstKTI GATC 5 cut(s) 10, 253, 586, 1123, 1289
BstMAI GTCTC 2 cut(s) 542, 605
BstMBI GATC 5 cut(s) 7, 250, 583, 1120, 1286
BstMCI CGRYCG 1 cut(s) 1200
BstMWI GCNNNNNNNGC 1 cut(s) 1067
BstNI CCWGG 2 cut(s) 672, 702
BstNSI RCATGY 2 cut(s) 1275, 1305
BstSCI CCNGG 7 cut(s) 73, 74, 670, 700, 706, 928, 1179
BstV1I GCAGC 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 835
BsuRI GGCC 1 cut(s) 715
BtgI CCRYGG 2 cut(s) 475, 909
BtsCI GGATG 2 cut(s) 10, 471
Cac8I GCNNGC 1 cut(s) 615
Cfr10I RCCGGY 3 cut(s) 640, 1008, 1211
Cfr13I GGNCC 4 cut(s) 674, 704, 713, 913
Cfr9I CCCGGG 1 cut(s) 74
CseI GACGC 1 cut(s) 668
CsiI ACCWGGT 1 cut(s) 670
Csp6I GTAC 5 cut(s) 378, 994, 1004, 1027, 1275
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 3 cut(s) 1094, 1272, 1302
CviQI GTAC 5 cut(s) 378, 994, 1004, 1027, 1275
DdeI CTNAG 3 cut(s) 178, 235, 1062
DpnI GATC 5 cut(s) 9, 252, 585, 1122, 1288
DpnII GATC 5 cut(s) 7, 250, 583, 1120, 1286
DriI GACNNNNNGTC 1 cut(s) 664
Eam1104I CTCTTC 5 cut(s) 29, 120, 168, 978, 1243
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 5 cut(s) 29, 120, 168, 978, 1243
EciI GGCGGA 1 cut(s) 349
Ecl136II GAGCTC 3 cut(s) 148, 635, 935
Eco24I GRGCYC 3 cut(s) 150, 637, 937
Eco47I GGWCC 3 cut(s) 674, 704, 913
Eco53kI GAGCTC 3 cut(s) 148, 635, 935
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 3 cut(s) 148, 635, 935
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 670, 700
EcoT38I GRGCYC 3 cut(s) 150, 637, 937
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 3 cut(s) 1097, 1275, 1305
FaiI YATR 9 cut(s) 896, 950, 965, 992, 1050, 1095, 1134, 1273, 1303
FalI AAGNNNNNCTT 6 cut(s) 8, 40, 150, 182, 325, 357
FaqI GGGAC 1 cut(s) 444
FatI CATG 3 cut(s) 1093, 1271, 1301
FauI CCCGC 1 cut(s) 634
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 2 cut(s) 17, 458
FriOI GRGCYC 3 cut(s) 150, 637, 937
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 2 cut(s) 140, 683
GluI GCNGC 1 cut(s) 552
GsaI CCCAGC 1 cut(s) 1286
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 1 cut(s) 715
HgaI GACGC 1 cut(s) 668
Hin1II CATG 3 cut(s) 1097, 1275, 1305
HincII GTYRAC 2 cut(s) 197, 421
HindII GTYRAC 2 cut(s) 197, 421
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 5 cut(s) 122, 336, 468, 480, 1031
HphI GGTGA 4 cut(s) 397, 587, 660, 1109
Hpy166II GTNNAC 3 cut(s) 197, 421, 655
Hpy188I TCNGA 1 cut(s) 853
Hpy8I GTNNAC 3 cut(s) 197, 421, 655
Hpy99I CGWCG 5 cut(s) 155, 368, 534, 662, 890
HpyAV CCTTC 2 cut(s) 560, 848
HpyCH4III ACNGT 5 cut(s) 377, 599, 779, 871, 1169
HpyCH4IV ACGT 3 cut(s) 487, 502, 861
HpyF10VI GCNNNNNNNGC 1 cut(s) 1067
HpyF3I CTNAG 3 cut(s) 178, 235, 1062
HpySE526I ACGT 3 cut(s) 487, 502, 861
Hsp92II CATG 3 cut(s) 1097, 1275, 1305
Kzo9I GATC 5 cut(s) 7, 250, 583, 1120, 1286
LguI GCTCTTC 2 cut(s) 120, 168
LmnI GCTCC 8 cut(s) 223, 569, 632, 640, 691, 697, 932, 940
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 1 cut(s) 220
MabI ACCWGGT 1 cut(s) 670
MaeI CTAG 2 cut(s) 140, 683
MaeII ACGT 3 cut(s) 487, 502, 861
MaeIII GTNAC 4 cut(s) 224, 666, 678, 857
MalI GATC 5 cut(s) 9, 252, 585, 1122, 1288
MboI GATC 5 cut(s) 7, 250, 583, 1120, 1286
MfeI CAATTG 1 cut(s) 917
MhlI GDGCHC 4 cut(s) 150, 574, 637, 937
MluCI AATT 9 cut(s) 257, 350, 621, 902, 917, 945, 997, 1256, 1292
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 3 cut(s) 301, 411, 831
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 7 cut(s) 311, 452, 494, 747, 810, 866, 1083
MslI CAYNNNNRTG 4 cut(s) 777, 833, 1098, 1306
MspA1I CMGCKG 1 cut(s) 428
MspR9I CCNGG 7 cut(s) 75, 76, 672, 702, 708, 930, 1181
MunI CAATTG 1 cut(s) 917
MvaI CCWGG 2 cut(s) 672, 702
MwoI GCNNNNNNNGC 1 cut(s) 1067
NciI CCSGG 5 cut(s) 75, 76, 708, 930, 1181
NdeII GATC 5 cut(s) 7, 250, 583, 1120, 1286
NlaIII CATG 3 cut(s) 1097, 1275, 1305
NlaIV GGNNCC 2 cut(s) 693, 699
NmuCI GTSAC 2 cut(s) 666, 678
NspI RCATGY 2 cut(s) 1275, 1305
PciI ACATGT 1 cut(s) 1301
PciSI GCTCTTC 2 cut(s) 120, 168
PcsI WCGNNNNNNNCGW 2 cut(s) 538, 867
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 4 cut(s) 336, 468, 480, 1031
PfoI TCCNGGA 1 cut(s) 1179
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 1301
PshBI ATTAAT 1 cut(s) 311
Psp124BI GAGCTC 3 cut(s) 150, 637, 937
Psp6I CCWGG 2 cut(s) 670, 700
PspFI CCCAGC 1 cut(s) 1282
PspGI CCWGG 2 cut(s) 670, 700
PspN4I GGNNCC 2 cut(s) 693, 699
PspPI GGNCC 4 cut(s) 674, 704, 713, 913
PsrI GAACNNNNNNTAC 2 cut(s) 526, 558
RsaI GTAC 5 cut(s) 379, 995, 1005, 1028, 1276
RsaNI GTAC 5 cut(s) 378, 994, 1004, 1027, 1275
RseI CAYNNNNRTG 4 cut(s) 777, 833, 1098, 1306
SacI GAGCTC 3 cut(s) 150, 637, 937
SapI GCTCTTC 2 cut(s) 120, 168
SaqAI TTAA 7 cut(s) 311, 452, 494, 747, 810, 866, 1083
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 5 cut(s) 7, 250, 583, 1120, 1286
Sau96I GGNCC 4 cut(s) 674, 704, 713, 913
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 7 cut(s) 75, 76, 672, 702, 708, 930, 1181
SduI GDGCHC 4 cut(s) 150, 574, 637, 937
SexAI ACCWGGT 1 cut(s) 670
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 3 cut(s) 674, 704, 913
SmaI CCCGGG 1 cut(s) 76
SmiMI CAYNNNNRTG 4 cut(s) 777, 833, 1098, 1306
SmlI CTYRAG 2 cut(s) 602, 741
SmoI CTYRAG 2 cut(s) 602, 741
Sse9I AATT 9 cut(s) 257, 350, 621, 902, 917, 945, 997, 1256, 1292
SsiI CCGC 5 cut(s) 57, 360, 426, 526, 627
SspMI CTAG 2 cut(s) 140, 683
SstI GAGCTC 3 cut(s) 150, 637, 937
StyD4I CCNGG 7 cut(s) 73, 74, 670, 700, 706, 928, 1179
TaaI ACNGT 5 cut(s) 377, 599, 779, 871, 1169
TaiI ACGT 3 cut(s) 490, 505, 864
TaqI TCGA 4 cut(s) 153, 483, 1119, 1200
TaqII GACCGA 1 cut(s) 1079
TasI AATT 9 cut(s) 257, 350, 621, 902, 917, 945, 997, 1256, 1292
TatI WGTACW 2 cut(s) 993, 1274
TfiI GAWTC 4 cut(s) 336, 468, 480, 1031
Tru1I TTAA 7 cut(s) 311, 452, 494, 747, 810, 866, 1083
Tru9I TTAA 7 cut(s) 311, 452, 494, 747, 810, 866, 1083
TseFI GTSAC 2 cut(s) 666, 678
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 2 cut(s) 666, 678
TspDTI ATGAA 2 cut(s) 761, 804
TspGWI ACGGA 8 cut(s) 91, 426, 492, 530, 666, 747, 926, 1159
TspMI CCCGGG 1 cut(s) 74
VpaK11BI GGWCC 3 cut(s) 674, 704, 913
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 1 cut(s) 257
XceI RCATGY 2 cut(s) 1275, 1305
XmaI CCCGGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 2 cut(s) 140, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.