Rh5AG323300

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
48288618 .. 48293648
5031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG323300.1

Sequence Viewer

Length: 1389 bp
ATGGATTTACGCATCCGTGGCGCATCGGCGCTCGCCTTTCTCCTCCTCTTCTTCTTCGCCGGAACCTGCTTCGCATTGCCGGAATATCCTCAGAAGCCCTCCTCCTCGGCGGCGTCCACCGCTCAGATCAACTCCAACTCCGTCCTGGTGGCCCTTCTCGACTCGCATTACTCCGAGCTGGCCGAGCTCGTCGAGAAGGCGCTGCTCCTGCAGACTCTCGAAGAGGCCGTCGGCCGCCACAACATCACCATCTTCGCTCCCCGAAACGACGCCGTCGACCGCGACCTCGACCCCGCCTTCAAGCGCTACTTGCTCGAACCCGGGAACCTCAAATCGCTCCAGAAGCTCCTCCTCTTCCACGTTATCCCCGCCCGGGTCGGATCCGACGAATGGCCCACCCACACTGCCTCCGCCCGACACCAGACGCTCTCCCTGGACCATCTCCACTTGTCCAGCCTCGCTTCCGGTGAGAGGGCTGTAGATCTCGCCCGGGTCATTCATCCCGACTCCGTGACCCGACCCGACGGAGTCATCCACGCCATCGAGAGGCTTCTTATCCCCCGCTCCGTAGAGGACGACTTCAACCGACGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCGGAGGGAGCCCCCGAAGTTGACCCCAGAACCAACCGGCTGAAAAAACCCGCCCCGCCGACCAAACCCGGATCCTCACCGGTGCTGCCCATCTACGACGCGTTGGCTCCCGGACCCTCGTTGGCTCCGGCTCCGGCACCCGGACCCGGCGGGCCCCAGCACCACTTCAACGGCCACGCCCAGGTGAAGGACTTCATCCAAACACTCTTGCACTACGGGGGTTACAACGAGATGGCGGACATTTTGGTAAATTTAACTTCTCTGGCTACGGAGATGGGTCGGTTAGTATCGGAGGGTTATGTGCTCACTGTTTTGGCTCCGAACGACGAGGCTATGGCGAAGCTGACGACGGACCAGCTCAGCGAGCCGGGTGCGCCGGAGCAGATCATGTACTACCATTTGATTCCCGAGTATCAGACTGAGGAGAGTATGTACAATGCCGTTAGGAGGTTCGGGAAGGTGAGCTATGAAACGCTGCGGTTGCCCAACAAGGTTGTGGCTCAAGAGGCTGATGGGTCCGTTAAGTTCGGGCAGGGAGACGGGTCGGCATACTTGTTCGACCCGGATATTTATACGGATGGTCGGATTTCCGTGCAGGGGATTGATGGGGTTTTGTTCCCGGCGGAAGAGGTGGAGTCCAAGTCCGAAACCAAAACGGTTCAACCCGCTAAGATTGTTACCAGGCCCAGGAGAGGAAAATTGATGGAAGTAGCATGTCGGATGCTAAGTACCGTTGGACAGAATTCTCGGTTCACCACTTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

50.63

Weight (kDa)

6.08

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 56 - 187 3.2e-19 Fasciclin domain
Fasciclin PF02469 304 - 414 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 757
AccBSI CCGCTC 3 cut(s) 122, 564, 603
AccI GTMKAC 1 cut(s) 276
AccII CGCG 2 cut(s) 282, 722
AclWI GGATC 4 cut(s) 375, 388, 687, 700
AcoI YGGCCR 3 cut(s) 180, 232, 793
AcsI RAATTY 2 cut(s) 871, 1363
AcyI GRCGYC 3 cut(s) 113, 270, 589
AfaI GTAC 3 cut(s) 1013, 1055, 1351
AfeI AGCGCT 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 720
AgeI ACCGGT 1 cut(s) 700
AgsI TTSAA 4 cut(s) 301, 583, 790, 1283
AjnI CCWGG 5 cut(s) 144, 432, 801, 1301, 1307
AluBI AGCT 6 cut(s) 178, 187, 346, 964, 979, 1086
AluI AGCT 6 cut(s) 178, 187, 346, 964, 979, 1086
Alw21I GWGCWC 2 cut(s) 189, 927
Alw26I GTCTC 1 cut(s) 1152
AlwI GGATC 4 cut(s) 375, 388, 687, 700
Ama87I CYCGRG 4 cut(s) 320, 372, 489, 1028
Aor51HI AGCGCT 1 cut(s) 305
AoxI GGCC 8 cut(s) 150, 180, 225, 232, 392, 773, 793, 1304
ApaI GGGCCC 1 cut(s) 777
ApeKI GCWGC 4 cut(s) 202, 594, 706, 1096
ApoI RAATTY 2 cut(s) 871, 1363
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AsiGI ACCGGT 1 cut(s) 700
Asp700I GAANNNNTTC 1 cut(s) 812
AspLEI GCGC 5 cut(s) 23, 31, 202, 306, 997
AsuHPI GGTGA 7 cut(s) 238, 479, 601, 690, 817, 1093, 1366
AvaI CYCGRG 4 cut(s) 320, 372, 489, 1028
AvaII GGWCC 5 cut(s) 436, 734, 764, 973, 1137
BaeGI GKGCMC 1 cut(s) 777
BamHI GGATCC 2 cut(s) 380, 692
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 3 cut(s) 189, 634, 777
Bbv12I GWGCWC 2 cut(s) 189, 927
BbvI GCAGC 4 cut(s) 189, 606, 693, 1083
BceAI ACGGC 5 cut(s) 212, 257, 599, 808, 1046
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 5 cut(s) 146, 434, 803, 1303, 1309
BcoDI GTCTC 1 cut(s) 1152
BfmI CTRYAG 2 cut(s) 209, 477
BfoI RGCGCY 3 cut(s) 32, 203, 307
BfuAI ACCTGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 481
BisI GCNGC 7 cut(s) 111, 203, 235, 592, 595, 707, 1097
BlpI GCTNAGC 1 cut(s) 980
BlsI GCNGC 7 cut(s) 112, 204, 236, 593, 596, 708, 1098
Bme18I GGWCC 5 cut(s) 436, 734, 764, 973, 1137
BmeT110I CYCGRG 4 cut(s) 320, 372, 489, 1028
BmsI GCATC 3 cut(s) 21, 32, 1332
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 980
BpuEI CTTGAG 1 cut(s) 1107
BsaHI GRCGYC 3 cut(s) 113, 270, 589
BsaJI CCNNGG 8 cut(s) 16, 105, 320, 372, 432, 489, 801, 1307
BsaWI WCCGGW 3 cut(s) 464, 622, 700
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 392, 422, 1037, 1067, 1247, 1277
Bse118I RCCGGY 2 cut(s) 657, 700
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 5 cut(s) 146, 434, 803, 1303, 1309
BseDI CCNNGG 8 cut(s) 16, 105, 320, 372, 432, 489, 801, 1307
BseGI GGATG 6 cut(s) 12, 499, 531, 816, 1204, 1347
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 4 cut(s) 104, 137, 994, 1032
BseRI GAGGAG 7 cut(s) 32, 35, 91, 94, 338, 341, 1058
BseSI GKGCMC 1 cut(s) 777
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 4 cut(s) 189, 606, 693, 1083
BseYI CCCAGC 1 cut(s) 777
BsgI GTGCAG 1 cut(s) 1235
Bsh1236I CGCG 2 cut(s) 282, 722
Bsh1285I CGRYCG 2 cut(s) 235, 280
BshFI GGCC 8 cut(s) 152, 182, 227, 234, 394, 775, 795, 1306
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 700
BsiEI CGRYCG 2 cut(s) 235, 280
BsiHKAI GWGCWC 2 cut(s) 189, 927
BsiHKCI CYCGRG 4 cut(s) 320, 372, 489, 1028
BsmAI GTCTC 1 cut(s) 1152
BsmBI CGTCTC 1 cut(s) 1152
BsnI GGCC 8 cut(s) 152, 182, 227, 234, 394, 775, 795, 1306
BsoBI CYCGRG 4 cut(s) 320, 372, 489, 1028
Bsp120I GGGCCC 1 cut(s) 773
Bsp1286I GDGCHC 4 cut(s) 189, 634, 777, 927
Bsp1407I TGTACA 1 cut(s) 1053
Bsp143I GATC 5 cut(s) 126, 380, 481, 692, 1005
Bsp1720I GCTNAGC 1 cut(s) 980
BspANI GGCC 8 cut(s) 152, 182, 227, 234, 394, 775, 795, 1306
BspCNI CTCAG 4 cut(s) 103, 136, 993, 1033
BspFNI CGCG 2 cut(s) 282, 722
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 4 cut(s) 375, 388, 687, 700
BspT107I GGYRCC 1 cut(s) 757
BsrBI CCGCTC 3 cut(s) 122, 564, 603
BsrDI GCAATG 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 657, 700
BsrGI TGTACA 1 cut(s) 1053
BssAI RCCGGY 2 cut(s) 657, 700
BssECI CCNNGG 8 cut(s) 16, 105, 320, 372, 432, 489, 801, 1307
BssMI GATC 5 cut(s) 126, 380, 481, 692, 1005
BssNI GRCGYC 3 cut(s) 113, 270, 589
Bst2UI CCWGG 5 cut(s) 146, 434, 803, 1303, 1309
Bst4CI ACNGT 3 cut(s) 931, 1279, 1354
Bst6I CTCTTC 4 cut(s) 53, 216, 359, 1242
BstACI GRCGYC 3 cut(s) 113, 270, 589
BstAUI TGTACA 1 cut(s) 1053
BstC8I GCNNGC 4 cut(s) 33, 180, 773, 986
BstDEI CTNAG 6 cut(s) 90, 123, 980, 1041, 1290, 1346
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 6 cut(s) 12, 499, 531, 816, 1204, 1347
BstFNI CGCG 2 cut(s) 282, 722
BstH2I RGCGCY 3 cut(s) 32, 203, 307
BstHHI GCGC 5 cut(s) 23, 31, 202, 306, 997
BstKTI GATC 5 cut(s) 129, 383, 484, 695, 1008
BstMAI GTCTC 1 cut(s) 1152
BstMBI GATC 5 cut(s) 126, 380, 481, 692, 1005
BstMCI CGRYCG 2 cut(s) 235, 280
BstNI CCWGG 5 cut(s) 146, 434, 803, 1303, 1309
BstNSI RCATGY 1 cut(s) 1338
BstSFI CTRYAG 2 cut(s) 209, 477
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 2 cut(s) 282, 722
BstV1I GCAGC 4 cut(s) 189, 606, 693, 1083
BstX2I RGATCY 3 cut(s) 380, 481, 692
BstYI RGATCY 3 cut(s) 380, 481, 692
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 8 cut(s) 152, 182, 227, 234, 394, 775, 795, 1306
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 6 cut(s) 12, 499, 531, 816, 1204, 1347
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 402, 927
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 4 cut(s) 33, 180, 773, 986
CfoI GCGC 5 cut(s) 23, 31, 202, 306, 997
Cfr10I RCCGGY 2 cut(s) 657, 700
Cfr9I CCCGGG 3 cut(s) 320, 372, 489
CseI GACGC 5 cut(s) 102, 278, 433, 597, 728
Csp6I GTAC 3 cut(s) 1012, 1054, 1350
CspAI ACCGGT 1 cut(s) 700
CviAII CATG 2 cut(s) 1009, 1335
CviQI GTAC 3 cut(s) 1012, 1054, 1350
DdeI CTNAG 6 cut(s) 90, 123, 980, 1041, 1290, 1346
DpnI GATC 5 cut(s) 128, 382, 483, 694, 1007
DpnII GATC 5 cut(s) 126, 380, 481, 692, 1005
EaeI YGGCCR 3 cut(s) 180, 232, 793
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 4 cut(s) 53, 216, 359, 1242
EarI CTCTTC 4 cut(s) 53, 216, 359, 1242
EciI GGCGGA 3 cut(s) 400, 872, 1259
Ecl136II GAGCTC 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 232
Eco24I GRGCYC 3 cut(s) 189, 634, 777
Eco47I GGWCC 5 cut(s) 436, 734, 764, 973, 1137
Eco47III AGCGCT 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 4 cut(s) 320, 372, 489, 1028
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 774
EcoRI GAATTC 1 cut(s) 1363
EcoRII CCWGG 5 cut(s) 144, 432, 801, 1301, 1307
EcoT38I GRGCYC 3 cut(s) 189, 634, 777
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 2 cut(s) 1012, 1338
FaiI YATR 8 cut(s) 921, 956, 1010, 1052, 1089, 1171, 1194, 1336
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 2 cut(s) 1008, 1334
FauI CCCGC 7 cut(s) 301, 376, 569, 679, 684, 764, 1294
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 7 cut(s) 111, 203, 235, 592, 595, 707, 1097
FokI GGATG 5 cut(s) 486, 518, 803, 1211, 1354
FriOI GRGCYC 3 cut(s) 189, 634, 777
Fsp4HI GCNGC 7 cut(s) 111, 203, 235, 592, 595, 707, 1097
GlaI GCGC 5 cut(s) 22, 30, 201, 305, 996
GluI GCNGC 7 cut(s) 111, 203, 235, 592, 595, 707, 1097
GsaI CCCAGC 1 cut(s) 781
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 3 cut(s) 32, 203, 307
HaeIII GGCC 8 cut(s) 152, 182, 227, 234, 394, 775, 795, 1306
HgaI GACGC 5 cut(s) 102, 278, 433, 597, 728
HhaI GCGC 5 cut(s) 23, 31, 202, 306, 997
Hin1I GRCGYC 3 cut(s) 113, 270, 589
Hin1II CATG 2 cut(s) 1012, 1338
Hin6I GCGC 5 cut(s) 21, 29, 200, 304, 995
HinP1I GCGC 5 cut(s) 21, 29, 200, 304, 995
HincII GTYRAC 2 cut(s) 277, 643
HindII GTYRAC 2 cut(s) 277, 643
HinfI GANTC 6 cut(s) 161, 214, 506, 528, 1024, 1256
HphI GGTGA 7 cut(s) 238, 479, 601, 690, 817, 1093, 1366
Hpy166II GTNNAC 4 cut(s) 117, 277, 643, 1374
Hpy188III TCNNGA 9 cut(s) 158, 193, 218, 340, 503, 544, 1028, 1075, 1124
Hpy8I GTNNAC 4 cut(s) 117, 277, 643, 1374
HpyAV CCTTC 5 cut(s) 164, 190, 307, 802, 1072
HpyCH4III ACNGT 3 cut(s) 931, 1279, 1354
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 211, 832, 1216
HpyF3I CTNAG 6 cut(s) 90, 123, 980, 1041, 1290, 1346
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 3 cut(s) 113, 270, 589
Hsp92II CATG 2 cut(s) 1012, 1338
HspAI GCGC 5 cut(s) 21, 29, 200, 304, 995
Kzo9I GATC 5 cut(s) 126, 380, 481, 692, 1005
Lsp1109I GCAGC 4 cut(s) 189, 606, 693, 1083
LweI GCATC 3 cut(s) 21, 32, 1332
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 511, 842, 1297
MalI GATC 5 cut(s) 128, 382, 483, 694, 1007
MbiI CCGCTC 3 cut(s) 122, 564, 603
MboI GATC 5 cut(s) 126, 380, 481, 692, 1005
MboII GAAGA 7 cut(s) 40, 43, 46, 233, 244, 346, 1259
MflI RGATCY 3 cut(s) 380, 481, 692
MhlI GDGCHC 4 cut(s) 189, 634, 777, 927
MluCI AATT 3 cut(s) 871, 1319, 1363
MluI ACGCGT 1 cut(s) 720
MlyI GAGTC 5 cut(s) 155, 208, 500, 537, 1265
MmeI TCCRAC 6 cut(s) 159, 358, 408, 1184, 1319, 1336
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 2 cut(s) 875, 1143
MvaI CCWGG 5 cut(s) 146, 434, 803, 1303, 1309
MvnI CGCG 2 cut(s) 282, 722
NdeII GATC 5 cut(s) 126, 380, 481, 692, 1005
NlaIII CATG 2 cut(s) 1012, 1338
NmeAIII GCCGAG 2 cut(s) 86, 208
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 1338
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 273, 384
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 1 cut(s) 1024
PflFI GACNNNGTC 2 cut(s) 272, 527
PfoI TCCNGGA 1 cut(s) 730
PinAI ACCGGT 1 cut(s) 700
PkrI GCNGC 7 cut(s) 112, 204, 236, 593, 596, 708, 1098
PleI GAGTC 5 cut(s) 155, 208, 500, 536, 1264
PpsI GAGTC 5 cut(s) 155, 208, 500, 536, 1264
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 5 cut(s) 144, 432, 801, 1301, 1307
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 5 cut(s) 144, 432, 801, 1301, 1307
PspOMI GGGCCC 1 cut(s) 773
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 3 cut(s) 380, 481, 692
PsyI GACNNNGTC 2 cut(s) 272, 527
RsaI GTAC 3 cut(s) 1013, 1055, 1351
RsaNI GTAC 3 cut(s) 1012, 1054, 1350
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 875, 1143
SatI GCNGC 7 cut(s) 111, 203, 235, 592, 595, 707, 1097
Sau3AI GATC 5 cut(s) 126, 380, 481, 692, 1005
SchI GAGTC 5 cut(s) 155, 208, 500, 537, 1265
SduI GDGCHC 4 cut(s) 189, 634, 777, 927
SfaNI GCATC 3 cut(s) 21, 32, 1332
SfcI CTRYAG 2 cut(s) 209, 477
SgrAI CRCCGGYG 1 cut(s) 700
SinI GGWCC 5 cut(s) 436, 734, 764, 973, 1137
SmaI CCCGGG 3 cut(s) 322, 374, 491
SmlI CTYRAG 1 cut(s) 1122
SmoI CTYRAG 1 cut(s) 1122
Sse9I AATT 3 cut(s) 871, 1319, 1363
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 3 cut(s) 931, 1279, 1354
TaiI ACGT 1 cut(s) 363
TaqI TCGA 8 cut(s) 159, 192, 219, 276, 288, 315, 543, 1179
TasI AATT 3 cut(s) 871, 1319, 1363
TatI WGTACW 2 cut(s) 1011, 1053
TauI GCSGC 3 cut(s) 113, 237, 594
TfiI GAWTC 1 cut(s) 1024
Tru1I TTAA 2 cut(s) 875, 1143
Tru9I TTAA 2 cut(s) 875, 1143
TscAI CASTG 2 cut(s) 409, 934
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 4 cut(s) 202, 594, 706, 1096
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 488, 805, 1104
TspMI CCCGGG 3 cut(s) 320, 372, 489
TspRI CASTG 2 cut(s) 409, 934
Tth111I GACNNNGTC 2 cut(s) 272, 527
VpaK11BI GGWCC 5 cut(s) 436, 734, 764, 973, 1137
XapI RAATTY 2 cut(s) 871, 1363
XceI RCATGY 1 cut(s) 1338
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 1114
XmaI CCCGGG 3 cut(s) 320, 372, 489
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.