Rorug05G0245000

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002595
Physical Location & Seq
Forward (+)
26398665 .. 26399470
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0245000.1

Sequence Viewer

Length: 462 bp
ATGGCCAAAGAGACAAAGGCTCATAGAACAGTAGGTGTTGGAGTTGAAGCCCTGTGGAGAGCTATGGCCAAGGATATAGTTTCTGTTATGCCAAAGATAATGCCTGATATAGTGCAAAGTGTCGAAGTGATTGAGGGAAATGGTGGCCTCGATTCTGTTCTGCTCTTCAAACTTGGCCGTGATCCAAAATCCAAGAGACAACAGACGGAGAAGATTGTGGAACTAGATGAGTCTCAGTATCGATTTGCACTGCAAGTGTTAGAAGGCCCAGCACTGACACTGCGTGATTTTTCTTCATTGACAACTACGTTTCAGCTAAGTGCAATCAGTGAGAAGGAGACCCTGGTTGATATGAAGGTAGAATATAATACTGAAAAAGAAGAAACTAATATGGGAGAGATAGCAATGCAGCCAGTGCTTTCTTTCGTTCAACTCCTTGAGAAACTTGTATTAGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

153

Amino Acids

17.13

Weight (kDa)

4.93

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 28 - 152 5.4e-11 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 3 cut(s) 3, 66, 175
AdeI CACNNNGTG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 47, 169, 431
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 2 cut(s) 62, 316
AluI AGCT 2 cut(s) 62, 316
Alw26I GTCTC 4 cut(s) 5, 190, 237, 332
AlwI GGATC 1 cut(s) 176
AoxI GGCC 5 cut(s) 3, 66, 145, 175, 265
ApeKI GCWGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 266
BalI TGGCCA 2 cut(s) 5, 68
BbvI GCAGC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 4 cut(s) 5, 190, 237, 332
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 69, 342
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 69, 342
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 268
BshFI GGCC 5 cut(s) 5, 68, 147, 177, 267
BshVI ATCGAT 1 cut(s) 241
BsmAI GTCTC 4 cut(s) 5, 190, 237, 332
BsnI GGCC 5 cut(s) 5, 68, 147, 177, 267
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 5 cut(s) 5, 68, 147, 177, 267
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 241
BspPI GGATC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 69, 342
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 234, 317
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 4 cut(s) 5, 190, 237, 332
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 5 cut(s) 5, 68, 147, 177, 267
BsuTUI ATCGAT 1 cut(s) 241
BtsI GCAGTG 2 cut(s) 248, 278
BtsIMutI CAGTG 5 cut(s) 248, 272, 278, 334, 420
Cfr13I GGNCC 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 241
DdeI CTNAG 2 cut(s) 234, 317
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraIII CACNNNGTG 1 cut(s) 284
EaeI YGGCCR 3 cut(s) 3, 66, 175
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaiI YATR 9 cut(s) 24, 65, 77, 89, 110, 353, 366, 392, 460
Fnu4HI GCNGC 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 410
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 5 cut(s) 5, 68, 147, 177, 267
HinfI GANTC 3 cut(s) 152, 230, 455
HpyAV CCTTC 3 cut(s) 257, 328, 349
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 115, 248, 253, 323, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 2 cut(s) 234, 317
HpySE526I ACGT 1 cut(s) 308
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 65, 117, 282, 329, 356, 426
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 4 cut(s) 157, 223, 285, 392
MlsI TGGCCA 2 cut(s) 5, 68
MluNI TGGCCA 2 cut(s) 5, 68
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 127, 158
Mox20I TGGCCA 2 cut(s) 5, 68
MscI TGGCCA 2 cut(s) 5, 68
Msp20I TGGCCA 2 cut(s) 5, 68
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 152, 455
PkrI GCNGC 1 cut(s) 411
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 342
PspPI GGNCC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 344
SetI ASST 5 cut(s) 37, 64, 311, 318, 360
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 311
TaqI TCGA 3 cut(s) 123, 150, 241
TfiI GAWTC 2 cut(s) 152, 455
TscAI CASTG 5 cut(s) 255, 279, 285, 334, 420
TseI GCWGC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 285, 368
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 5 cut(s) 255, 279, 285, 334, 420
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.