Rorug05G0245200

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002595
Physical Location & Seq
Forward (+)
26401840 .. 26402674
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0245200.1

Sequence Viewer

Length: 468 bp
ATGGTTAAGGAAATCAAAACAGAAACCAAAGTTGGTGTTGGGATTGAAGCCTTGTGGAAGGCTTTGTCAAAAGATTTGAGATTTCTGGCTCCAAAAATTGCCCCCAATTTGATCAAGAATGTGGAACTCATAGAAGGAGATGGTACCGGCATCGGTACAGTCTTGCTCTTCAGCTTTGGCACTGATGCATCAAAGATAATTTACCAGAAGGAGAAGATTGTGGAGCTTGATGAGTCTGTCCATAAAATTGGGCTGCAAGTAATAGAAGGAGGCCACTTGAACCATGGGTTTTCTTCATACAAAACAAGTTTCCAACTTACTGCAATTCAAGAGCAGGAGATCCTGGTTAGTTTCACAGTGACCTATGAGTCTGAAGTTGAAGATACTGCCATGCCATCAAGGTCAACCCAAGCTGCTGTAGCTTTCATCAGGAGCCTAGAGTCCTATTTGTTAAGTGCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

5.23

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 152 9.3e-19 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AclWI GGATC 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 154, 393
AfaI GTAC 2 cut(s) 145, 157
AgsI TTSAA 4 cut(s) 47, 280, 329, 380
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 4 cut(s) 174, 226, 413, 422
AluI AGCT 4 cut(s) 174, 226, 413, 422
AlwI GGATC 1 cut(s) 334
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 4 cut(s) 253, 413, 458, 461
Asp718I GGTACC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 240, 400, 445, 448
BccI CCATC 2 cut(s) 134, 403
BciT130I CCWGG 1 cut(s) 344
BclI TGATCA 1 cut(s) 111
BfaI CTAG 2 cut(s) 437, 466
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 4 cut(s) 254, 414, 459, 462
BlsI GCNGC 4 cut(s) 255, 415, 460, 463
Bme1390I CCNGG 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 90, 145, 434
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 3 cut(s) 159, 175, 197
BsaJI CCNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 146
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 283
BseXI GCAGC 4 cut(s) 240, 400, 445, 448
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 147
BsnI GGCC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 111, 339
Bsp19I CCATGG 1 cut(s) 283
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 90, 145, 434
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 111, 339
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 160, 358
Bst6I CTCTTC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 283
BstKTI GATC 2 cut(s) 114, 342
BstMBI GATC 2 cut(s) 111, 339
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 4 cut(s) 240, 400, 445, 448
BstX2I RGATCY 1 cut(s) 339
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 180, 363
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 2 cut(s) 144, 156
CviAII CATG 2 cut(s) 284, 391
CviQI GTAC 2 cut(s) 144, 156
DpnI GATC 2 cut(s) 113, 341
DpnII GATC 2 cut(s) 111, 339
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 154, 393
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 287, 394
FaiI YATR 6 cut(s) 131, 243, 285, 298, 366, 392
FatI CATG 2 cut(s) 283, 390
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 254, 414, 459, 462
Fsp4HI GCNGC 4 cut(s) 254, 414, 459, 462
FspBI CTAG 2 cut(s) 437, 466
GluI GCNGC 4 cut(s) 254, 414, 459, 462
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 287, 394
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 3 cut(s) 233, 368, 440
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 3 cut(s) 115, 329, 430
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 4 cut(s) 52, 128, 202, 260
HpyCH4III ACNGT 2 cut(s) 160, 358
HpyCH4V TGCA 3 cut(s) 188, 256, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
Hsp92II CATG 2 cut(s) 287, 394
KpnI GGTACC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 339
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 3 cut(s) 94, 223, 432
LpnPI CCDG 7 cut(s) 71, 160, 218, 320, 329, 356, 415
Lsp1109I GCAGC 4 cut(s) 240, 400, 445, 448
LweI GCATC 3 cut(s) 159, 175, 197
MaeI CTAG 2 cut(s) 437, 466
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 113, 341
MboI GATC 2 cut(s) 111, 339
MboII GAAGA 4 cut(s) 160, 226, 285, 392
MflI RGATCY 1 cut(s) 339
MluCI AATT 5 cut(s) 96, 106, 198, 246, 324
MlyI GAGTC 3 cut(s) 242, 377, 449
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 2 cut(s) 6, 452
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 419
NcoI CCATGG 1 cut(s) 283
NdeII GATC 2 cut(s) 111, 339
NlaIII CATG 2 cut(s) 287, 394
NlaIV GGNNCC 3 cut(s) 90, 145, 434
NmuCI GTSAC 1 cut(s) 358
NsiI ATGCAT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 255, 415, 460, 463
PleI GAGTC 3 cut(s) 241, 376, 448
PpsI GAGTC 3 cut(s) 241, 376, 448
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 90, 145, 434
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 2 cut(s) 145, 157
RsaNI GTAC 2 cut(s) 144, 156
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 6, 452
SatI GCNGC 4 cut(s) 254, 414, 459, 462
Sau3AI GATC 2 cut(s) 111, 339
SchI GAGTC 3 cut(s) 242, 377, 449
ScrFI CCNGG 1 cut(s) 344
SetI ASST 6 cut(s) 176, 228, 365, 404, 415, 424
SfaNI GCATC 3 cut(s) 159, 175, 197
SfcI CTRYAG 1 cut(s) 417
Sse9I AATT 5 cut(s) 96, 106, 198, 246, 324
SspMI CTAG 2 cut(s) 437, 466
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 160, 358
TasI AATT 5 cut(s) 96, 106, 198, 246, 324
Tru1I TTAA 2 cut(s) 6, 452
Tru9I TTAA 2 cut(s) 6, 452
TscAI CASTG 2 cut(s) 187, 363
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 4 cut(s) 253, 413, 458, 461
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 285, 415
TspRI CASTG 2 cut(s) 187, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 2 cut(s) 437, 466
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.