Rorug05G0245300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002595
Physical Location & Seq
Reverse (-)
26402989 .. 26404472
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0245300.1

Sequence Viewer

Length: 1029 bp
ATGGAGGTCTTGAGAAGCAGTTCCACATTGATCATTGTCCTAGTATGTTTTGCAGGTGTTATATATCAAGCTAATGCATACAGTTCTGTGTACTGTACCAACCCAGCAAGCAGATGCTATGGGAAGACTGTTAAGTGCCCATATGAATGCCCAACCAGTTACTCTGAAGACCCGAAAGCCAAAATTTGCTATATCGACTGTGATTCACCCATATGCAAGGCGCATTGCAAGCAGCGCAAACCAAACTGCAATAGCCCTGGATCAGCATGCTATGATCCACGTTTCATCGGTGGTGATGGCATTGTTTTCTATTTCCATGGCAAGAGCAACGAGCAGTTCAGTTTAGTCTCAGACAAAAACCTCCAGATCAATGGCCGCTTCATTGGCCACAGACCAGCCGACCGTACTCGTGACTATACCTGGATTCAGGCCCTTGGAGTCCTTCTAAACTCCCAGAGTTTCTCTGTGGAAGCCACCAAAGTGGCTACATGGAACAACCAAATTGACCATCTGAGATTCACTCACAATGGAAATGATGTAGTTTTGGAAGAAGGGTATCTTTCCACTTGGTACTCACCAGAAAAAGATATCAAAGTTGAGAGAATAGCAAGCAAGAACAGTGTGATAGTGTCGCTCAAGGATGTAGCTGAGATTATGATCAATGTTGTGCCAGTGACCAAAGAAGATGATAGGATTCACAACTACCAAGTACCTGAAAATGACTGCTTTGCCCATTTGGAAGCCCAGTTCAAGTTCTTTGCTCTGTCCCCAAAAGTTGAGGGAGTTCTTGGAAGGACTTACAGGCCCGATTTCGAGAACCCGGCAAAGCCTGGAGTGGCAATGCCAGTTATTGGAGGTGAAGAGAAGTACAGAACCACATCACTTCTCTCTGCTGATTGTGCTATTTGTGATTTGTTCTCAAAGGAAATTAGTGAGTCAGAGAAAGAAACTTCAGCAATTGTGGACTATGGTACACTAGACTGTACCAGAAGATCCTCAGGAGGGTATGGTATTGTTTGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

342

Amino Acids

38.16

Weight (kDa)

6.4

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 249 - 303 2e-26 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 851
AciI CCGC 1 cut(s) 376
AclWI GGATC 3 cut(s) 268, 269, 987
AcoI YGGCCR 2 cut(s) 373, 385
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 2 cut(s) 186, 936
AfaI GTAC 8 cut(s) 92, 97, 406, 572, 711, 869, 973, 985
AfiI CCNNNNNNNGG 2 cut(s) 851, 1002
AgsI TTSAA 1 cut(s) 751
AjnI CCWGG 3 cut(s) 256, 419, 829
AleI CACNNNNGTG 1 cut(s) 479
AloI GAACNNNNNNTCC 2 cut(s) 731, 763
AluBI AGCT 2 cut(s) 71, 647
AluI AGCT 2 cut(s) 71, 647
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 3 cut(s) 268, 269, 987
AoxI GGCC 4 cut(s) 373, 385, 429, 803
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 2 cut(s) 223, 237
AspS9I GGNCC 2 cut(s) 430, 804
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 4 cut(s) 198, 305, 567, 869
AxyI CCTNAGG 1 cut(s) 997
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 387
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 131, 174
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 290, 516
BciT130I CCWGG 3 cut(s) 258, 421, 831
BclI TGATCA 2 cut(s) 30, 657
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 2 cut(s) 41, 977
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 233, 376
BlsI GCNGC 2 cut(s) 234, 377
Bme1390I CCNGG 4 cut(s) 258, 421, 821, 831
BmgT120I GGNCC 2 cut(s) 430, 804
BmrFI CCNGG 4 cut(s) 258, 421, 821, 831
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 2 cut(s) 131, 174
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpmI CTGGAG 2 cut(s) 347, 852
BpuEI CTTGAG 2 cut(s) 31, 620
BpuMI CCSGG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 256, 316, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 1002
Bse1I ACTGG 4 cut(s) 156, 671, 745, 845
Bse21I CCTNAGG 1 cut(s) 997
Bse3DI GCAATG 2 cut(s) 223, 846
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 3 cut(s) 258, 421, 831
BseDI CCNNGG 3 cut(s) 256, 316, 433
BseGI GGATG 1 cut(s) 646
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 2 cut(s) 851, 1002
BseMI GCAATG 2 cut(s) 223, 846
BseMII CTCAG 4 cut(s) 363, 503, 639, 1011
BseNI ACTGG 4 cut(s) 156, 671, 745, 845
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 4 cut(s) 375, 387, 431, 805
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 851, 1002
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 751
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 4 cut(s) 375, 387, 431, 805
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 6 cut(s) 30, 260, 274, 366, 657, 992
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 1 cut(s) 376
BspANI GGCC 4 cut(s) 375, 387, 431, 805
BspCNI CTCAG 4 cut(s) 362, 504, 640, 1010
BspMI ACCTGC 1 cut(s) 44
BspPI GGATC 3 cut(s) 268, 269, 987
BsrDI GCAATG 2 cut(s) 223, 846
BsrI ACTGG 4 cut(s) 156, 671, 745, 845
BssECI CCNNGG 3 cut(s) 256, 316, 433
BssMI GATC 6 cut(s) 30, 260, 274, 366, 657, 992
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 316, 433
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 3 cut(s) 258, 421, 831
Bst4CI ACNGT 7 cut(s) 83, 95, 130, 200, 404, 620, 983
Bst6I CTCTTC 1 cut(s) 855
BstC8I GCNNGC 4 cut(s) 109, 230, 268, 610
BstDEI CTNAG 4 cut(s) 349, 512, 648, 997
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 646
BstHHI GCGC 2 cut(s) 223, 237
BstKTI GATC 6 cut(s) 33, 263, 277, 369, 660, 995
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 6 cut(s) 30, 260, 274, 366, 657, 992
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 229, 234, 384, 899
BstNI CCWGG 3 cut(s) 258, 421, 831
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 4 cut(s) 256, 419, 819, 829
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 2 cut(s) 131, 174
BstX2I RGATCY 1 cut(s) 992
BstXI CCANNNNNNTGG 2 cut(s) 371, 481
BstYI RGATCY 1 cut(s) 992
Bsu36I CCTNAGG 1 cut(s) 997
BsuRI GGCC 4 cut(s) 375, 387, 431, 805
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 2 cut(s) 625, 678
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 4 cut(s) 109, 230, 268, 610
CfoI GCGC 2 cut(s) 223, 237
Cfr13I GGNCC 2 cut(s) 430, 804
Csp6I GTAC 8 cut(s) 91, 96, 405, 571, 710, 868, 972, 984
CviAII CATG 3 cut(s) 267, 317, 489
CviQI GTAC 8 cut(s) 91, 96, 405, 571, 710, 868, 972, 984
DdeI CTNAG 4 cut(s) 349, 512, 648, 997
DpnI GATC 6 cut(s) 32, 262, 276, 368, 659, 994
DpnII GATC 6 cut(s) 30, 260, 274, 366, 657, 992
EaeI YGGCCR 2 cut(s) 373, 385
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
Eco130I CCWWGG 2 cut(s) 316, 433
Eco32I GATATC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 186, 936
Eco81I CCTNAGG 1 cut(s) 997
EcoO109I RGGNCCY 1 cut(s) 430
EcoRII CCWGG 3 cut(s) 256, 419, 829
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 316, 433
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 316, 433
FaeI CATG 3 cut(s) 270, 320, 492
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 751
FatI CATG 3 cut(s) 266, 316, 488
FauNDI CATATG 2 cut(s) 142, 212
FbaI TGATCA 2 cut(s) 30, 657
Fnu4HI GCNGC 2 cut(s) 233, 376
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 2 cut(s) 233, 376
FspBI CTAG 2 cut(s) 41, 977
GlaI GCGC 2 cut(s) 222, 236
GluI GCNGC 2 cut(s) 233, 376
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 2 cut(s) 347, 852
HaeIII GGCC 4 cut(s) 375, 387, 431, 805
HapII CCGG 1 cut(s) 821
HhaI GCGC 2 cut(s) 223, 237
Hin1II CATG 3 cut(s) 270, 320, 492
Hin6I GCGC 2 cut(s) 221, 235
HinP1I GCGC 2 cut(s) 221, 235
HinfI GANTC 6 cut(s) 203, 424, 438, 516, 694, 935
HpaII CCGG 1 cut(s) 821
HphI GGTGA 4 cut(s) 198, 305, 567, 869
Hpy166II GTNNAC 3 cut(s) 91, 964, 974
Hpy188I TCNGA 4 cut(s) 166, 352, 513, 940
Hpy188III TCNNGA 5 cut(s) 10, 364, 410, 814, 999
Hpy8I GTNNAC 3 cut(s) 91, 964, 974
HpyAV CCTTC 3 cut(s) 452, 545, 786
HpyCH4III ACNGT 7 cut(s) 83, 95, 130, 200, 404, 620, 983
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 53, 77, 216, 228, 249, 1020
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 234, 384, 899
HpyF3I CTNAG 4 cut(s) 349, 512, 648, 997
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 3 cut(s) 270, 320, 492
HspAI GCGC 2 cut(s) 221, 235
Ksp22I TGATCA 2 cut(s) 30, 657
Kzo9I GATC 6 cut(s) 30, 260, 274, 366, 657, 992
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 41, 977
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 3 cut(s) 158, 410, 673
MalI GATC 6 cut(s) 32, 262, 276, 368, 659, 994
MboI GATC 6 cut(s) 30, 260, 274, 366, 657, 992
MboII GAAGA 6 cut(s) 136, 179, 560, 695, 872, 1002
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 1 cut(s) 992
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 4 cut(s) 183, 501, 927, 957
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 2 cut(s) 447, 944
MnlI CCTC 5 cut(s) 371, 772, 848, 995, 1006
Mox20I TGGCCA 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 3 cut(s) 145, 211, 479
Msp20I TGGCCA 1 cut(s) 387
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 4 cut(s) 258, 421, 821, 831
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 3 cut(s) 258, 421, 831
MwoI GCNNNNNNNGC 4 cut(s) 229, 234, 384, 899
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 316
NdeI CATATG 2 cut(s) 142, 212
NdeII GATC 6 cut(s) 30, 260, 274, 366, 657, 992
NlaIII CATG 3 cut(s) 270, 320, 492
NmuCI GTSAC 2 cut(s) 410, 673
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 479
PaeI GCATGC 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 44
PctI GAATGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 4 cut(s) 203, 424, 516, 694
PflMI CCANNNNNTGG 1 cut(s) 851
PkrI GCNGC 2 cut(s) 234, 377
PleI GAGTC 2 cut(s) 446, 943
PpsI GAGTC 2 cut(s) 446, 943
Psp6I CCWGG 3 cut(s) 256, 419, 829
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 3 cut(s) 256, 419, 829
PspPI GGNCC 2 cut(s) 430, 804
PsuI RGATCY 1 cut(s) 992
RsaI GTAC 8 cut(s) 92, 97, 406, 572, 711, 869, 973, 985
RsaNI GTAC 8 cut(s) 91, 96, 405, 571, 710, 868, 972, 984
RseI CAYNNNNRTG 3 cut(s) 145, 211, 479
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 233, 376
Sau3AI GATC 6 cut(s) 30, 260, 274, 366, 657, 992
Sau96I GGNCC 2 cut(s) 430, 804
SchI GAGTC 2 cut(s) 447, 944
ScrFI CCNGG 4 cut(s) 258, 421, 821, 831
SduI GDGCHC 1 cut(s) 140
SetI ASST 9 cut(s) 9, 58, 73, 283, 363, 422, 649, 715, 859
SfaNI GCATC 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 145, 211, 479
SmlI CTYRAG 2 cut(s) 10, 635
SmoI CTYRAG 2 cut(s) 10, 635
SphI GCATGC 1 cut(s) 270
Sse9I AATT 4 cut(s) 183, 501, 927, 957
SsiI CCGC 1 cut(s) 376
SspMI CTAG 2 cut(s) 41, 977
StyD4I CCNGG 4 cut(s) 256, 419, 819, 829
StyI CCWWGG 2 cut(s) 316, 433
TaaI ACNGT 7 cut(s) 83, 95, 130, 200, 404, 620, 983
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 195, 813
TasI AATT 4 cut(s) 183, 501, 927, 957
TatI WGTACW 2 cut(s) 90, 867
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 4 cut(s) 203, 424, 516, 694
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 625, 678
TseFI GTSAC 2 cut(s) 410, 673
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 2 cut(s) 410, 673
TspDTI ATGAA 3 cut(s) 159, 274, 370
TspRI CASTG 2 cut(s) 625, 678
Van91I CCANNNNNTGG 1 cut(s) 851
XapI RAATTY 1 cut(s) 183
XceI RCATGY 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 2 cut(s) 41, 977
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.