Rorug05G0245100

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002595
Physical Location & Seq
Forward (+)
26400535 .. 26401345
811 bp
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UTR
Exon/CDS
Intron
Rorug05G0245100.1

Sequence Viewer

Length: 393 bp
ATGCTTTGTCCAAAAGAGTTCAGATTTGTGGTTCCAAAAGTCGTCCCCAATGTGGTCAAGAATGTGGAACTCATCGAAGGAGATGGTACCAGCATCGGTACAGTCTTGCTCTTCAATTTTGCCTCTGATGCATTTAAGATAAACTACCAGAAGGAAAAGATTGTGGAGCTTGATGAATCCGTGCACAGAATTGGGCTGCAAGTGATAGAAGGAGGCCACTTGAACATTGGGTTTTCTTCCTACAAAGCAAGTTTCCAACTTGCTGCAATTCAGGAGCAGGAGACCCTACTGGTGAGTCTCACAGTCACCTATGAGTCTGAAGTTGAGGATGCTACCATGTCATCAAAGGCAACCCAATCTGCTCTAGCTTTTATCACGAACCTAGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

4.74

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 10 - 127 1.3e-12 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 2 cut(s) 88, 100
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 115, 223
AluBI AGCT 2 cut(s) 169, 368
AluI AGCT 2 cut(s) 169, 368
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 275, 302
Alw44I GTGCAC 1 cut(s) 182
AoxI GGCC 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 196, 263
Asp718I GGTACC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 298, 304
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 183, 250
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 275, 302
BfaI CTAG 2 cut(s) 365, 383
BisI GCNGC 2 cut(s) 197, 264
BlsI GCNGC 2 cut(s) 198, 265
BmiI GGNNCC 2 cut(s) 33, 88
BmsI GCATC 3 cut(s) 102, 118, 319
BsaI GGTCTC 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 183, 250
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 275, 302
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 186
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 33, 88
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 103, 304
Bst6I CTCTTC 1 cut(s) 116
BstF5I GGATG 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 275, 302
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 183, 250
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 334
Csp6I GTAC 2 cut(s) 87, 99
CviAII CATG 1 cut(s) 337
CviJI RGCY 4 cut(s) 169, 196, 216, 368
CviKI_1 RGCY 4 cut(s) 169, 196, 216, 368
CviQI GTAC 2 cut(s) 87, 99
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 133
FaeI CATG 1 cut(s) 340
FaiI YATR 2 cut(s) 312, 338
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 197, 264
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 197, 264
FspBI CTAG 2 cut(s) 365, 383
GluI GCNGC 2 cut(s) 197, 264
HaeIII GGCC 1 cut(s) 216
Hin1II CATG 1 cut(s) 340
HinfI GANTC 4 cut(s) 176, 295, 314, 386
HphI GGTGA 2 cut(s) 298, 304
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 23, 127, 319
Hpy188III TCNNGA 3 cut(s) 58, 272, 376
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 71, 145, 203
HpyCH4III ACNGT 2 cut(s) 103, 304
HpyCH4V TGCA 4 cut(s) 131, 184, 199, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 340
KpnI GGTACC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 166, 274
LpnPI CCDG 5 cut(s) 103, 161, 257, 263, 275
Lsp1109I GCAGC 2 cut(s) 183, 250
LweI GCATC 3 cut(s) 102, 118, 319
MaeI CTAG 2 cut(s) 365, 383
MaeIII GTNAC 1 cut(s) 304
MboII GAAGA 2 cut(s) 103, 228
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 115, 189, 267
MlyI GAGTC 2 cut(s) 304, 323
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 3 cut(s) 133, 206, 319
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 2 cut(s) 135, 391
MwoI GCNNNNNNNGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 2 cut(s) 33, 88
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 176, 386
PkrI GCNGC 2 cut(s) 198, 265
PleI GAGTC 2 cut(s) 303, 322
PpsI GAGTC 2 cut(s) 303, 322
PspN4I GGNNCC 2 cut(s) 33, 88
RsaI GTAC 2 cut(s) 88, 100
RsaNI GTAC 2 cut(s) 87, 99
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 135, 391
SatI GCNGC 2 cut(s) 197, 264
SchI GAGTC 2 cut(s) 304, 323
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 171, 311, 370, 384
SfaNI GCATC 3 cut(s) 102, 118, 319
Sse9I AATT 3 cut(s) 115, 189, 267
SspMI CTAG 2 cut(s) 365, 383
TaaI ACNGT 2 cut(s) 103, 304
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 115, 189, 267
TfiI GAWTC 2 cut(s) 176, 386
Tru1I TTAA 2 cut(s) 135, 391
Tru9I TTAA 2 cut(s) 135, 391
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 196, 263
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 169
VneI GTGCAC 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 2 cut(s) 365, 383
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.