Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442075.1

Orthogroup ID

OG0002595

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1601

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 928 bp

gcggaggttgtccgacccgacgacgtgatccgacccgacggcctgatccacggaatcgaaagagtcctaattcctcgctcagtgcaagaagacttcaaccggagaagaagtttacggtcgatttccgccgttatacccgagggtgccccggaagtggatccgagaacccaccgactgaagaaacccgcaccggcagtacccgccggagccccaccggttctgcccatttacgacgctttggcgccgggtccttctctagctccggctccggcacccggacccggcggtccccgccaccacttcgacggcatgagccaggttaaggacttcatccacacccttttgcattacggcgggtacaacgaaatggccgatattctggtaaacctgacctcgttggcgacggagatgggccggttagtctcagagggttacgttctgacggttttggcgccaaatgatgaggcgatggcgaagctgacgacggaccaattgagcgaaccgggtgcgccggagcagattgtttactatcatatcataccggaataccaaacggaggagagtatgtacaactccgtcaggagattcgggaaggtgcaatacgatacgctgaggctgccgcacagggttgtggcccaagaggctgatgggtcggtgaaattcgggtcgggcgatgtgtcggcgtatcttttcgacccggatatctatacggatggtcggatttcggtgcaaggtattgatgaggttctgtttccggttgaagaagagaagaaagcaactccggttgttaaggccgccgctgctaagcccagaagagtcataatcttgggaggagtggaagcttgggaaatggagcagtccgatggccactgtcggtggtgcgaagttaaaattgatgtgtcacgggtcctttggggccaggagaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

309

Amino Acids

34.01

Weight (kDa)

5.34

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35860 AT3G11700 AT3G52370 AT3G52370 AT5G06390
fragaria_vesca	FvH4_3g26750 FvH4_3g26750 FvH4_6g20860
malus_domestica	MD12G1044800.v1.1 MD14G1043600.v1.1
prunus_persica	Prupe.7G090600_v2.0.a1 Prupe.7G090600_v2.0.a1
pyrus_communis	pycom12g03860 pycom14g03710
rosa_chinensis	RchiOBHm_Chr3g0477211 RchiOBHm_Chr5g0049181
rosa_laevigata	RLG00000023736 RLG00000034597
rosa_multiflora	Rmu_co8442075.1_g000001 Rmu_sc0000348.1_g000001 Rmu_sc0006880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032550 Rroxscaffold_6G00404330 Rroxscaffold_6G00404830
rosa_rugosa	Rorug03G0158800 Rorug05G0245000 Rorug05G0245100 Rorug05G0245200 Rorug05G0245300
rosa_samantha	Rh3AG209300 Rh3BG242700 Rh3CG236900 Rh3DG235800 Rh5AG323300 Rh5BG333800 Rh5CG358900 Rh5DG345300
rosa_wichuraiana	Rw0G000220 Rw0G021760 Rw5G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AccB1I	GGYRCC	4 cut(s)	143, 241, 271, 451
AclWI	GGATC	4 cut(s)	22, 40, 152, 165
AcoI	YGGCCR	2 cut(s)	369, 865
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	242, 452
AfaI	GTAC	3 cut(s)	198, 359, 569
AfiI	CCNNNNNNNGG	6 cut(s)	154, 275, 281, 322, 556, 925
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	97, 761
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	315, 918
AluBI	AGCT	3 cut(s)	260, 478, 842
AluI	AGCT	3 cut(s)	260, 478, 842
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	22, 40, 152, 165
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	7 cut(s)	40, 369, 412, 633, 792, 865, 916
ApeKI	GCWGC	2 cut(s)	616, 800
ApoI	RAATTY	1 cut(s)	659
AsiGI	ACCGGT	1 cut(s)	214
AspLEI	GCGC	3 cut(s)	244, 454, 511
AspS9I	GGNCC	8 cut(s)	248, 278, 287, 412, 487, 634, 907, 916
AsuC2I	CCSGG	6 cut(s)	149, 246, 276, 282, 504, 698
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	5 cut(s)	248, 278, 287, 487, 907
BaeGI	GKGCMC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	867
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	4 cut(s)	143, 241, 271, 451
BanII	GRGCYC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	2 cut(s)	603, 787
BccI	CCATC	5 cut(s)	403, 463, 641, 707, 857
BceAI	ACGGC	4 cut(s)	55, 113, 322, 367
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	317, 920
BcnI	CCSGG	6 cut(s)	149, 246, 276, 282, 504, 698
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	257
BfoI	RGCGCY	2 cut(s)	245, 455
BglI	GCCNNNNNGGC	1 cut(s)	641
BisI	GCNGC	5 cut(s)	617, 620, 795, 798, 801
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	5 cut(s)	618, 621, 796, 799, 802
Bme1390I	CCNGG	8 cut(s)	149, 246, 276, 282, 317, 504, 698, 920
Bme18I	GGWCC	5 cut(s)	248, 278, 287, 487, 907
BmeT110I	CYCGRG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	8 cut(s)	248, 278, 287, 412, 487, 634, 907, 916
BmrFI	CCNGG	8 cut(s)	149, 246, 276, 282, 317, 504, 698, 920
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuMI	CCSGG	6 cut(s)	149, 246, 276, 282, 504, 698
BsaHI	GRCGYC	2 cut(s)	242, 452
BsaJI	CCNNGG	3 cut(s)	49, 138, 147
BsaWI	WCCGGW	5 cut(s)	99, 214, 541, 754, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 551, 581
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 275, 281, 322, 556, 925
Bse118I	RCCGGY	3 cut(s)	190, 214, 414
BseBI	CCWGG	2 cut(s)	317, 920
BseDI	CCNNGG	3 cut(s)	49, 138, 147
BseGI	GGATG	2 cut(s)	330, 718
BseLI	CCNNNNNNNGG	6 cut(s)	154, 275, 281, 322, 556, 925
BseMII	CTCAG	3 cut(s)	93, 438, 602
BseRI	GAGGAG	2 cut(s)	572, 846
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	603, 787
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	7 cut(s)	42, 371, 414, 635, 794, 867, 918
BshNI	GGYRCC	4 cut(s)	143, 241, 271, 451
BshTI	ACCGGT	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	6 cut(s)	154, 275, 281, 322, 556, 925
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	7 cut(s)	42, 371, 414, 635, 794, 867, 918
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	148, 211
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	27, 45, 157
Bsp1720I	GCTNAGC	1 cut(s)	804
BspANI	GGCC	7 cut(s)	42, 371, 414, 635, 794, 867, 918
BspCNI	CTCAG	3 cut(s)	92, 437, 603
BspPI	GGATC	4 cut(s)	22, 40, 152, 165
BspT107I	GGYRCC	4 cut(s)	143, 241, 271, 451
BsrFI	RCCGGY	3 cut(s)	190, 214, 414
BsrGI	TGTACA	1 cut(s)	567
BssAI	RCCGGY	3 cut(s)	190, 214, 414
BssECI	CCNNGG	3 cut(s)	49, 138, 147
BssMI	GATC	3 cut(s)	27, 45, 157
BssNI	GRCGYC	2 cut(s)	242, 452
Bst2UI	CCWGG	2 cut(s)	317, 920
Bst4CI	ACNGT	3 cut(s)	117, 445, 872
Bst6I	CTCTTC	2 cut(s)	759, 808
BstACI	GRCGYC	2 cut(s)	242, 452
BstAUI	TGTACA	1 cut(s)	567
BstDEI	CTNAG	4 cut(s)	79, 424, 611, 804
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	330, 718
BstH2I	RGCGCY	2 cut(s)	245, 455
BstHHI	GCGC	3 cut(s)	244, 454, 511
BstKTI	GATC	3 cut(s)	30, 48, 160
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	27, 45, 157
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 291, 616, 641, 800
BstNI	CCWGG	2 cut(s)	317, 920
BstSCI	CCNGG	8 cut(s)	147, 244, 274, 280, 315, 502, 696, 918
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	603, 787
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	7 cut(s)	42, 371, 414, 635, 794, 867, 918
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	2 cut(s)	482, 687
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	330, 718
BtsIMutI	CAGTG	2 cut(s)	87, 868
CfoI	GCGC	3 cut(s)	244, 454, 511
Cfr10I	RCCGGY	3 cut(s)	190, 214, 414
Cfr13I	GGNCC	8 cut(s)	248, 278, 287, 412, 487, 634, 907, 916
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	197, 358, 568
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	3 cut(s)	197, 358, 568
DdeI	CTNAG	4 cut(s)	79, 424, 611, 804
DinI	GGCGCC	2 cut(s)	243, 453
DpnI	GATC	3 cut(s)	29, 47, 159
DpnII	GATC	3 cut(s)	27, 45, 157
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
EaeI	YGGCCR	2 cut(s)	369, 865
Eam1104I	CTCTTC	2 cut(s)	759, 808
EarI	CTCTTC	2 cut(s)	759, 808
EciI	GGCGGA	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	5 cut(s)	248, 278, 287, 487, 907
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	137
EcoO109I	RGGNCCY	2 cut(s)	248, 907
EcoRII	CCWGG	2 cut(s)	315, 918
EcoRV	GATATC	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	211
EgeI	GGCGCC	2 cut(s)	243, 453
EheI	GGCGCC	2 cut(s)	243, 453
FaeI	CATG	1 cut(s)	313
FaiI	YATR	7 cut(s)	134, 311, 534, 539, 566, 708, 821
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	1 cut(s)	309
FauI	CCCGC	4 cut(s)	193, 208, 299, 347
Fnu4HI	GCNGC	5 cut(s)	617, 620, 795, 798, 801
FokI	GGATG	2 cut(s)	317, 725
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	617, 620, 795, 798, 801
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	3 cut(s)	243, 453, 510
GluI	GCNGC	5 cut(s)	617, 620, 795, 798, 801
HaeII	RGCGCY	2 cut(s)	245, 455
HaeIII	GGCC	7 cut(s)	42, 371, 414, 635, 794, 867, 918
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	244, 454, 511
Hin1I	GRCGYC	2 cut(s)	242, 452
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	3 cut(s)	242, 452, 509
HinP1I	GCGC	3 cut(s)	242, 452, 509
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	4 cut(s)	54, 63, 585, 816
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	3 cut(s)	113, 385, 526
Hpy188I	TCNGA	7 cut(s)	14, 32, 162, 427, 441, 720, 862
Hpy188III	TCNNGA	2 cut(s)	580, 589
Hpy8I	GTNNAC	3 cut(s)	113, 385, 526
Hpy99I	CGWCG	7 cut(s)	23, 26, 41, 236, 308, 406, 487
HpyAV	CCTTC	3 cut(s)	261, 586, 919
HpyCH4III	ACNGT	3 cut(s)	117, 445, 872
HpyCH4IV	ACGT	2 cut(s)	24, 435
HpyCH4V	TGCA	4 cut(s)	85, 346, 598, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 291, 616, 641, 800
HpyF3I	CTNAG	4 cut(s)	79, 424, 611, 804
HpySE526I	ACGT	2 cut(s)	24, 435
Hsp92I	GRCGYC	2 cut(s)	242, 452
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	3 cut(s)	242, 452, 509
KasI	GGCGCC	2 cut(s)	241, 451
Kzo9I	GATC	3 cut(s)	27, 45, 157
LmnI	GCTCC	5 cut(s)	206, 265, 271, 514, 853
Lsp1109I	GCAGC	2 cut(s)	603, 787
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	24, 435
MaeIII	GTNAC	2 cut(s)	431, 900
MalI	GATC	3 cut(s)	29, 47, 159
MboI	GATC	3 cut(s)	27, 45, 157
MboII	GAAGA	7 cut(s)	101, 117, 190, 773, 776, 781, 825
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	148, 211
MlsI	TGGCCA	1 cut(s)	867
MluCI	AATT	4 cut(s)	69, 491, 659, 891
MluNI	TGGCCA	1 cut(s)	867
Mly113I	GGCGCC	2 cut(s)	242, 452
MlyI	GAGTC	2 cut(s)	72, 825
MmeI	TCCRAC	3 cut(s)	37, 55, 698
Mox20I	TGGCCA	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	867
MseI	TTAA	3 cut(s)	321, 789, 888
Msp20I	TGGCCA	1 cut(s)	867
MspA1I	CMGCKG	1 cut(s)	800
MspR9I	CCNGG	8 cut(s)	149, 246, 276, 282, 317, 504, 698, 920
MunI	CAATTG	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	317, 920
MwoI	GCNNNNNNNGC	5 cut(s)	200, 291, 616, 641, 800
NarI	GGCGCC	2 cut(s)	242, 452
NciI	CCSGG	6 cut(s)	149, 246, 276, 282, 504, 698
NdeII	GATC	3 cut(s)	27, 45, 157
NlaIII	CATG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 669
PfeI	GAWTC	2 cut(s)	54, 585
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	5 cut(s)	618, 621, 796, 799, 802
PleI	GAGTC	2 cut(s)	71, 824
PluTI	GGCGCC	2 cut(s)	245, 455
PpsI	GAGTC	2 cut(s)	71, 824
PpuMI	RGGWCCY	2 cut(s)	248, 907
Psp5II	RGGWCCY	2 cut(s)	248, 907
Psp6I	CCWGG	2 cut(s)	315, 918
PspGI	CCWGG	2 cut(s)	315, 918
PspPI	GGNCC	8 cut(s)	248, 278, 287, 412, 487, 634, 907, 916
PspPPI	RGGWCCY	2 cut(s)	248, 907
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	198, 359, 569
RsaNI	GTAC	3 cut(s)	197, 358, 568
SaqAI	TTAA	3 cut(s)	321, 789, 888
SatI	GCNGC	5 cut(s)	617, 620, 795, 798, 801
Sau3AI	GATC	3 cut(s)	27, 45, 157
Sau96I	GGNCC	8 cut(s)	248, 278, 287, 412, 487, 634, 907, 916
SchI	GAGTC	2 cut(s)	72, 825
ScrFI	CCNGG	8 cut(s)	149, 246, 276, 282, 317, 504, 698, 920
SduI	GDGCHC	2 cut(s)	148, 211
SfoI	GGCGCC	2 cut(s)	243, 453
SinI	GGWCC	5 cut(s)	248, 278, 287, 487, 907
Sse9I	AATT	4 cut(s)	69, 491, 659, 891
SspDI	GGCGCC	2 cut(s)	241, 451
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	8 cut(s)	147, 244, 274, 280, 315, 502, 696, 918
TaaI	ACNGT	3 cut(s)	117, 445, 872
TaiI	ACGT	2 cut(s)	27, 438
TaqI	TCGA	4 cut(s)	57, 119, 303, 693
TasI	AATT	4 cut(s)	69, 491, 659, 891
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	3 cut(s)	622, 797, 800
TfiI	GAWTC	2 cut(s)	54, 585
Tru1I	TTAA	3 cut(s)	321, 789, 888
Tru9I	TTAA	3 cut(s)	321, 789, 888
TscAI	CASTG	2 cut(s)	87, 875
TseFI	GTSAC	1 cut(s)	900
TseI	GCWGC	2 cut(s)	616, 800
Tsp45I	GTSAC	1 cut(s)	900
TspDTI	ATGAA	1 cut(s)	319
TspGWI	ACGGA	6 cut(s)	66, 419, 500, 565, 569, 725
TspRI	CASTG	2 cut(s)	87, 875
VpaK11BI	GGWCC	5 cut(s)	248, 278, 287, 487, 907
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.