Rorug03G0158800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002595
Physical Location & Seq
Reverse (-)
13118636 .. 13123096
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0158800.1

Sequence Viewer

Length: 1632 bp
ATGGCAGTAGCCGTTGAAGCCACCACTTTGGAACACACACCGACATGGGCTCTTGCCACTGTTTGCTTCTTCTTCATCTCCGTCTCCATCTTGATTGAACACTTAATCCACCTCCTTGTAACATGGCTCAAAAACCATCGAAAAACCGCCTTAACTGATGCGGTTGAGAAGCTCAAAGCAGAGTTGATGCTTCTGGGATTTGTGTCACTTTTATTGGCGGTGACCCAAGATAGGATAGCGAAAATTTGTATACCTGCAAAGATAGGAGATATAATGCTTCCATGTCGTAAAGCCTCGAATGAGACGGCCAAAGTGGAAACTGTTGAGCACTATGTGAACAAATTTGCAGGAAACCTTAATTCTTCTGGGGCACATGTCATGTTTGACCAAATGCTCAGGCAAACGCAGAGGATACTCGCCGAGGATGAGGAGGCAGCAGCTGTTGAGGATTATTGCGGTGATGGAAAGGTTTCGTTGGTGACGAAAAACGCCCTTCATCAGCTGCACTTGCTGATCTTTGCGCTTGCGGTTATGCATATTGTGTATAGTGTTCTAACCATGGCTTTGGGCAGGGCTAAGATGAGGCGCTGGGAAGCATGGGAGGAAGAAACTCGAACAATGGAGTACCAAGTTGCCAATGACCCCAATCGATTCAGACTTACGAGACAAACAACATTTGGACAAAGGCACATGAATACGTGCACAGAGACTTCACTTCATCTATGGCTGAAATGCTTTTTCAGGCAATTCTATAATTCCGTAGCAAAAGTTGACTACTTCACCATGAGACACGGTTTTATATCGGCTCACCTATCAAGCAGACACAACAACTTTGATTTTCAAAAATACATACAGCGATCCTTGGAGGAAGATTTCAAGACATTGGTTGGCATAAGCCCTGCAATGTGGTTTGTAGTAGCCATTTTTATGCTGGTGGATGTGTATGGTTGGCATGTATATCTTTGGCTATCCTATGTTCCACTCTTGGTCGTTCTGGTCCTAGGAACCAAACTTGAATACATTGTTGCAAAGATGGCGCTTCAAATTAAAGAACAGAACAATGTAATCATTGGAACACCTCTTGTTCGAGTAGACGATAATCTATTCTGGTTCGGGAAACCAAGATTTGTCTTGGTGCTTTTACATTATACTTTGTTCCTGAATGCATTTGAGCTTGCCTTCTTCGTTTGGGTTACAGCCCAATTTGGAGTAGAATCCTGCTACCACGAGCACAAAGTGATCATTGTTACAAGAGTTTTCTTAGCGGTGACCACCCAAGTCCTCTGCAGCTACATTACTCTTCCTCTGTATGCACTTGTAACACAGATGGGTTCACAATTCAAGGGTAAGATACTAGAAGATAACATGGCTGGCATTCTAAAGCAATGGCACCGTGATGTGAGGCGGAGAAGGAAGATGGAAGAACAAGAATCACAATCTGGACGCACGTCTTTTTCCATGGAATGGAGCTCTGTGAGGCACAGCATTTCTTCTTATATGAGACCAAGCACTTCCAGACGAGGTGAAAATGCCGATTTTTCTAACAGATGGGATAACAAGGACCAGATAGTAGAATTAGAAGAAAGCTCCTCATCAAGGGGTCACAGAAGAAATAGTGATAATGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

543

Amino Acids

62.71

Weight (kDa)

8.74

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 496 1.9e-194 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 1389
AccB7I CCANNNNNTGG 1 cut(s) 1464
AccI GTMKAC 2 cut(s) 250, 1092
AciI CCGC 7 cut(s) 147, 161, 218, 456, 527, 1265, 1405
AclWI GGATC 1 cut(s) 852
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 243, 341
AdeI CACNNNGTG 2 cut(s) 334, 1237
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 3 cut(s) 231, 1464, 1596
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 7 cut(s) 17, 98, 842, 877, 1016, 1043, 1342
AjiI CACGTC 1 cut(s) 1449
AloI GAACNNNNNNTCC 2 cut(s) 90, 122
AluBI AGCT 7 cut(s) 172, 440, 502, 1174, 1290, 1470, 1587
AluI AGCT 7 cut(s) 172, 440, 502, 1174, 1290, 1470, 1587
Alw21I GWGCWC 4 cut(s) 330, 704, 1233, 1472
Alw26I GTCTC 6 cut(s) 88, 296, 658, 701, 781, 1495
Alw44I GTGCAC 1 cut(s) 700
AlwI GGATC 1 cut(s) 852
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 1 cut(s) 306
ApaLI GTGCAC 1 cut(s) 700
ApeKI GCWGC 4 cut(s) 434, 437, 502, 1287
ApoI RAATTY 2 cut(s) 243, 341
Asp700I GAANNNNTTC 1 cut(s) 469
AspA2I CCTAGG 1 cut(s) 1000
AspLEI GCGC 3 cut(s) 523, 588, 1039
AspS9I GGNCC 2 cut(s) 997, 1561
AsuHPI GGTGA 7 cut(s) 232, 470, 490, 772, 800, 1279, 1535
AvaII GGWCC 2 cut(s) 997, 1561
AvrII CCTAGG 1 cut(s) 1000
BaeGI GKGCMC 2 cut(s) 373, 704
BanI GGYRCC 1 cut(s) 1389
BanII GRGCYC 2 cut(s) 52, 1472
BauI CACGAG 1 cut(s) 1226
Bbv12I GWGCWC 4 cut(s) 330, 704, 1233, 1472
BbvI GCAGC 4 cut(s) 446, 449, 489, 1299
BccI CCATC 7 cut(s) 95, 144, 455, 1027, 1321, 1411, 1542
BceAI ACGGC 1 cut(s) 321
BciVI GTATCC 1 cut(s) 405
BclI TGATCA 1 cut(s) 1239
BcoDI GTCTC 6 cut(s) 88, 296, 658, 701, 781, 1495
BfaI CTAG 2 cut(s) 1001, 1355
BfmI CTRYAG 1 cut(s) 1285
BfoI RGCGCY 2 cut(s) 589, 1040
BfuAI ACCTGC 1 cut(s) 262
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 4 cut(s) 435, 438, 503, 1288
BlnI CCTAGG 1 cut(s) 1000
BlsI GCNGC 4 cut(s) 436, 439, 504, 1289
Bme18I GGWCC 2 cut(s) 997, 1561
BmgBI CACGTC 1 cut(s) 1449
BmgT120I GGNCC 2 cut(s) 997, 1561
BmiI GGNNCC 2 cut(s) 1006, 1391
BmsI GCATC 2 cut(s) 148, 177
BoxI GACNNNNGTC 1 cut(s) 1447
Bpu10I CCTNAGC 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 1495
BsaJI CCNNGG 5 cut(s) 420, 558, 861, 1000, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 1464, 1596
Bse3DI GCAATG 2 cut(s) 909, 1391
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 5 cut(s) 420, 558, 861, 1000, 1458
BseGI GGATG 2 cut(s) 430, 943
BseLI CCNNNNNNNGG 3 cut(s) 231, 1464, 1596
BseMI GCAATG 2 cut(s) 909, 1391
BseMII CTCAG 1 cut(s) 409
BseRI GAGGAG 2 cut(s) 443, 1579
BseSI GKGCMC 2 cut(s) 373, 704
BseXI GCAGC 4 cut(s) 446, 449, 489, 1299
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 1389
BshVI ATCGAT 1 cut(s) 649
BsiHKAI GWGCWC 4 cut(s) 330, 704, 1233, 1472
BslI CCNNNNNNNGG 3 cut(s) 231, 1464, 1596
BsmAI GTCTC 6 cut(s) 88, 296, 658, 701, 781, 1495
BsmBI CGTCTC 2 cut(s) 88, 296
BsmI GAATGC 2 cut(s) 1168, 1374
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 1495
Bsp1286I GDGCHC 6 cut(s) 52, 330, 373, 704, 1233, 1472
Bsp143I GATC 3 cut(s) 513, 857, 1239
Bsp19I CCATGG 2 cut(s) 558, 1458
BspACI CCGC 7 cut(s) 147, 161, 218, 456, 527, 1265, 1405
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 408
BspDI ATCGAT 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 1006, 1391
BspMAI CTGCAG 1 cut(s) 1289
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 852
BspT107I GGYRCC 1 cut(s) 1389
BspTNI GGTCTC 1 cut(s) 1495
BsrDI GCAATG 2 cut(s) 909, 1391
BssECI CCNNGG 5 cut(s) 420, 558, 861, 1000, 1458
BssMI GATC 3 cut(s) 513, 857, 1239
BssNAI GTATAC 1 cut(s) 251
BssSI CACGAG 1 cut(s) 1226
BssT1I CCWWGG 4 cut(s) 558, 861, 1000, 1458
Bst1107I GTATAC 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 1226
Bst4CI ACNGT 4 cut(s) 61, 322, 794, 1394
Bst6I CTCTTC 1 cut(s) 1305
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 3 cut(s) 525, 1176, 1372
BstDEI CTNAG 3 cut(s) 395, 576, 1261
BstDSI CCRYGG 2 cut(s) 558, 1458
BstEII GGTNACC 2 cut(s) 220, 1267
BstENI CCTNNNNNAGG 1 cut(s) 1594
BstF5I GGATG 2 cut(s) 430, 943
BstH2I RGCGCY 2 cut(s) 589, 1040
BstHHI GCGC 3 cut(s) 523, 588, 1039
BstKTI GATC 3 cut(s) 516, 860, 1242
BstMAI GTCTC 6 cut(s) 88, 296, 658, 701, 781, 1495
BstMBI GATC 3 cut(s) 513, 857, 1239
BstMWI GCNNNNNNNGC 3 cut(s) 17, 508, 1034
BstNSI RCATGY 2 cut(s) 377, 956
BstPAI GACNNNNGTC 1 cut(s) 1447
BstPI GGTNACC 2 cut(s) 220, 1267
BstSFI CTRYAG 1 cut(s) 1285
BstSLI GKGCMC 2 cut(s) 373, 704
BstV1I GCAGC 4 cut(s) 446, 449, 489, 1299
BstXI CCANNNNNNTGG 2 cut(s) 28, 565
BstZ17I GTATAC 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 649
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 649
BtgI CCRYGG 2 cut(s) 558, 1458
BtrI CACGTC 1 cut(s) 1449
BtsCI GGATG 2 cut(s) 430, 943
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 3 cut(s) 525, 1176, 1372
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 3 cut(s) 523, 588, 1039
Cfr13I GGNCC 2 cut(s) 997, 1561
ClaI ATCGAT 1 cut(s) 649
CseI GACGC 1 cut(s) 1452
Csp6I GTAC 1 cut(s) 625
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 395, 576, 1261
DpnI GATC 3 cut(s) 515, 859, 1241
DpnII GATC 3 cut(s) 513, 857, 1239
DraIII CACNNNGTG 2 cut(s) 334, 1237
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 1305
EarI CTCTTC 1 cut(s) 1305
EciI GGCGGA 1 cut(s) 1420
Ecl136II GAGCTC 1 cut(s) 1470
Eco130I CCWWGG 4 cut(s) 558, 861, 1000, 1458
Eco24I GRGCYC 2 cut(s) 52, 1472
Eco31I GGTCTC 1 cut(s) 1495
Eco47I GGWCC 2 cut(s) 997, 1561
Eco53kI GAGCTC 1 cut(s) 1470
Eco91I GGTNACC 2 cut(s) 220, 1267
EcoICRI GAGCTC 1 cut(s) 1470
EcoNI CCTNNNNNAGG 1 cut(s) 1594
EcoO65I GGTNACC 2 cut(s) 220, 1267
EcoT14I CCWWGG 4 cut(s) 558, 861, 1000, 1458
EcoT22I ATGCAT 2 cut(s) 537, 1168
EcoT38I GRGCYC 2 cut(s) 52, 1472
ErhI CCWWGG 4 cut(s) 558, 861, 1000, 1458
Esp3I CGTCTC 2 cut(s) 88, 296
FbaI TGATCA 1 cut(s) 1239
FblI GTMKAC 2 cut(s) 250, 1092
Fnu4HI GCNGC 4 cut(s) 435, 438, 503, 1288
FokI GGATG 2 cut(s) 437, 950
FriOI GRGCYC 2 cut(s) 52, 1472
Fsp4HI GCNGC 4 cut(s) 435, 438, 503, 1288
FspBI CTAG 2 cut(s) 1001, 1355
GlaI GCGC 3 cut(s) 522, 587, 1038
GluI GCNGC 4 cut(s) 435, 438, 503, 1288
GsaI CCCAGC 1 cut(s) 592
HaeII RGCGCY 2 cut(s) 589, 1040
HaeIII GGCC 1 cut(s) 308
HgaI GACGC 1 cut(s) 1452
HhaI GCGC 3 cut(s) 523, 588, 1039
Hin6I GCGC 3 cut(s) 521, 586, 1037
HinP1I GCGC 3 cut(s) 521, 586, 1037
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 3 cut(s) 651, 1214, 1430
HphI GGTGA 7 cut(s) 232, 470, 490, 772, 800, 1279, 1535
Hpy166II GTNNAC 6 cut(s) 251, 337, 702, 772, 1093, 1334
Hpy188I TCNGA 1 cut(s) 656
Hpy188III TCNNGA 6 cut(s) 91, 877, 1114, 1159, 1440, 1515
Hpy8I GTNNAC 6 cut(s) 251, 337, 702, 772, 1093, 1334
HpyAV CCTTC 3 cut(s) 503, 1189, 1404
HpyCH4III ACNGT 4 cut(s) 61, 322, 794, 1394
HpyCH4IV ACGT 2 cut(s) 698, 1448
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 508, 1034
HpyF3I CTNAG 3 cut(s) 395, 576, 1261
HpySE526I ACGT 2 cut(s) 698, 1448
HspAI GCGC 3 cut(s) 521, 586, 1037
Ksp22I TGATCA 1 cut(s) 1239
Kzo9I GATC 3 cut(s) 513, 857, 1239
LmnI GCTCC 2 cut(s) 1467, 1592
Lsp1109I GCAGC 4 cut(s) 446, 449, 489, 1299
LweI GCATC 2 cut(s) 148, 177
MaeI CTAG 2 cut(s) 1001, 1355
MaeII ACGT 2 cut(s) 698, 1448
MaeIII GTNAC 9 cut(s) 118, 204, 220, 478, 1192, 1246, 1267, 1318, 1601
MalI GATC 3 cut(s) 515, 859, 1241
MboI GATC 3 cut(s) 513, 857, 1239
MhlI GDGCHC 6 cut(s) 52, 330, 373, 704, 1233, 1472
MluCI AATT 9 cut(s) 243, 341, 358, 746, 754, 1044, 1202, 1337, 1574
Mph1103I ATGCAT 2 cut(s) 537, 1168
MroXI GAANNNNTTC 1 cut(s) 469
MseI TTAA 4 cut(s) 104, 152, 357, 1047
MslI CAYNNNNRTG 3 cut(s) 43, 926, 1395
MspA1I CMGCKG 2 cut(s) 440, 502
Mva1269I GAATGC 2 cut(s) 1168, 1374
MwoI GCNNNNNNNGC 3 cut(s) 17, 508, 1034
NcoI CCATGG 2 cut(s) 558, 1458
NdeII GATC 3 cut(s) 513, 857, 1239
NlaIV GGNNCC 2 cut(s) 1006, 1391
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 5 cut(s) 204, 220, 478, 1267, 1601
NsiI ATGCAT 2 cut(s) 537, 1168
NspI RCATGY 2 cut(s) 377, 956
PciI ACATGT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PctI GAATGC 2 cut(s) 1168, 1374
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 3 cut(s) 651, 1214, 1430
PflMI CCANNNNNTGG 1 cut(s) 1464
PkrI GCNGC 4 cut(s) 436, 439, 504, 1289
Ppu21I YACGTR 1 cut(s) 699
PscI ACATGT 1 cut(s) 373
PshAI GACNNNNGTC 1 cut(s) 1447
Psp124BI GAGCTC 1 cut(s) 1472
PspEI GGTNACC 2 cut(s) 220, 1267
PspFI CCCAGC 1 cut(s) 588
PspN4I GGNNCC 2 cut(s) 1006, 1391
PspPI GGNCC 2 cut(s) 997, 1561
PstI CTGCAG 1 cut(s) 1289
PstNI CAGNNNCTG 1 cut(s) 440
PvuII CAGCTG 2 cut(s) 440, 502
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 3 cut(s) 43, 926, 1395
SacI GAGCTC 1 cut(s) 1472
SaqAI TTAA 4 cut(s) 104, 152, 357, 1047
SatI GCNGC 4 cut(s) 435, 438, 503, 1288
Sau3AI GATC 3 cut(s) 513, 857, 1239
Sau96I GGNCC 2 cut(s) 997, 1561
SduI GDGCHC 6 cut(s) 52, 330, 373, 704, 1233, 1472
SfaNI GCATC 2 cut(s) 148, 177
SfcI CTRYAG 1 cut(s) 1285
SinI GGWCC 2 cut(s) 997, 1561
SmiMI CAYNNNNRTG 3 cut(s) 43, 926, 1395
Sse9I AATT 9 cut(s) 243, 341, 358, 746, 754, 1044, 1202, 1337, 1574
SsiI CCGC 7 cut(s) 147, 161, 218, 456, 527, 1265, 1405
SspMI CTAG 2 cut(s) 1001, 1355
SstI GAGCTC 1 cut(s) 1472
StyI CCWWGG 4 cut(s) 558, 861, 1000, 1458
TaaI ACNGT 4 cut(s) 61, 322, 794, 1394
TaiI ACGT 2 cut(s) 701, 1451
TaqI TCGA 5 cut(s) 139, 296, 613, 649, 1087
TasI AATT 9 cut(s) 243, 341, 358, 746, 754, 1044, 1202, 1337, 1574
TfiI GAWTC 3 cut(s) 651, 1214, 1430
Tru1I TTAA 4 cut(s) 104, 152, 357, 1047
Tru9I TTAA 4 cut(s) 104, 152, 357, 1047
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 5 cut(s) 204, 220, 478, 1267, 1601
TseI GCWGC 4 cut(s) 434, 437, 502, 1287
Tsp45I GTSAC 5 cut(s) 204, 220, 478, 1267, 1601
TspDTI ATGAA 4 cut(s) 64, 485, 707, 707
TspGWI ACGGA 2 cut(s) 70, 748
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 1464
VneI GTGCAC 1 cut(s) 700
VpaK11BI GGWCC 2 cut(s) 997, 1561
XagI CCTNNNNNAGG 1 cut(s) 1594
XapI RAATTY 2 cut(s) 243, 341
XceI RCATGY 2 cut(s) 377, 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmaJI CCTAGG 1 cut(s) 1000
XmiI GTMKAC 2 cut(s) 250, 1092
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 2 cut(s) 1001, 1355
Zsp2I ATGCAT 2 cut(s) 537, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.