RLG00000034597

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
45749479 .. 45752446
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034597

Sequence Viewer

Length: 1401 bp
ATGGATTTACGCATCCGTGGCGCATCGGCTCTCTCCTTTCTCCTCCTCCTCTTCTTCTTCTTCTTCGCCGGAACCTGCTTCGCATTGCCGGAATATCCTCAGAAGCCCTCCTCCTCCTCCTCGGCGTCCACCGCTCAGATCAACTCCAACTCCGTCCTGGTGGCCCTTCTCGACTCGCATTACTCCGAGCTGGCCGAGCTCGTCGAGAAGGCCCTGCTCCTCCAGACTCTCGAAGAGGCCGTCGGCCGCCACAACATCACCATCTTCGCTCCCCGAAACGACGCCGTCGACCGCGACCTCGACCCCGACTTCAAGCGCTACTTGCTCGAACCCGGCAACCTCAAATCGCTCCAGAAGCTCCTCCTCTTCCACGTTATCCCCACCCGGGTCGGATCCGACGAATGGCCCACCCACACTGCCTCCGCCCGACACCAGACGCTCTCCCAGGACCATCTCCACTTGTCCAGGCTGGCTTCCGGTGAGAAGGCCGTAGATCTCGCCCGGGTCATTCATCCCGACTCCGTGACCCGACCCGACGGAGTCATCCACGCCATCGAGAGGCTTCTTATCCCCCGCTCCGTAGAAGACGACTTCAACCGACGCCGCAGCCTCCGCTCCATCACCGCGGTCAAACCGGAGGGAGCTCCCGAAGTTGACCCGAGAACCAACCGGTTGAAAAAACCCGCCCCGCCGACCAAGCCCGGATCCTCACCGGTCCTGCCCATCTACGACGCGTTGGCTCCCGGACCCTCGTTGGCTCCGGCTCCGGCACCCGGACCCGGAGGGCCCCACCACCACTTCAACGGCCACGCCCAGGTGAAAGACTTCATCCAAACACTCTTACACTACGGGGGTTACAACGAGATGGCGGACATTTTGGTAAATTTAACTTCTCTGGCTACTGAGATGGGTCGGTTAGTATCGGAGGGTTATGTGCTCACTGTTCTGGCTCCGAACGACGAGGCTATGGCGAAGCTGACGACGGACCAGCTCAGCGAGCCGGGTGCGCCGGAGCAGATCATGTACTACCATTTGATTCCCGAGTATCAGACTGAGGAGAGTATGTACAATGCCGTTAGGAGGTTCGGGAAGGTGAGCTATGAAACGCTGCGGTTGCCCAACAAGGTTGTGGCTCAAGAGGCTGACGGGTCCGTTAAGTTCGGGCAGGGAGACGGGTCGGCATACCTGTTCGACCCGGATATTTATACGGACGGTCGGATTTCCGTGCAGGGGATTGATGGGGTTTTGTTCCCGGCGGAAGAGGTGGAGTCCAAGTCCGAAACCAAAACGGTTCAACCCGCTAAGATTGTTGCCAGGCCCAGGAGAGGAAAATTGATGGAAGTAGCATGTCGGATGCTAAGTACCGTTGGACAGAATTCTCGGTTCACCACTTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

51.27

Weight (kDa)

6.12

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 60 - 191 4.5e-20 Fasciclin domain
Fasciclin PF02469 308 - 418 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 769
AccBSI CCGCTC 3 cut(s) 134, 576, 615
AccI GTMKAC 1 cut(s) 288
AccII CGCG 3 cut(s) 294, 626, 734
AclWI GGATC 4 cut(s) 387, 400, 699, 712
AcoI YGGCCR 3 cut(s) 192, 244, 805
AcsI RAATTY 2 cut(s) 883, 1375
AcyI GRCGYC 3 cut(s) 125, 282, 601
AfaI GTAC 3 cut(s) 1025, 1067, 1363
AfeI AGCGCT 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 732
AgeI ACCGGT 2 cut(s) 669, 712
AgsI TTSAA 5 cut(s) 313, 595, 676, 802, 1295
AjnI CCWGG 6 cut(s) 156, 444, 464, 813, 1313, 1319
AluBI AGCT 7 cut(s) 190, 199, 358, 644, 976, 991, 1098
AluI AGCT 7 cut(s) 190, 199, 358, 644, 976, 991, 1098
Alw21I GWGCWC 3 cut(s) 201, 646, 939
Alw26I GTCTC 1 cut(s) 1164
AlwI GGATC 4 cut(s) 387, 400, 699, 712
Ama87I CYCGRG 4 cut(s) 384, 501, 658, 1040
Aor51HI AGCGCT 1 cut(s) 317
ApaI GGGCCC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 606, 1108
ApoI RAATTY 2 cut(s) 883, 1375
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AsiGI ACCGGT 2 cut(s) 669, 712
Asp700I GAANNNNTTC 1 cut(s) 824
AspLEI GCGC 3 cut(s) 23, 318, 1009
AsuHPI GGTGA 7 cut(s) 250, 491, 613, 702, 829, 1105, 1378
AvaI CYCGRG 4 cut(s) 384, 501, 658, 1040
AvaII GGWCC 6 cut(s) 448, 715, 746, 776, 985, 1149
BaeGI GKGCMC 1 cut(s) 789
BamHI GGATCC 2 cut(s) 392, 704
BanI GGYRCC 1 cut(s) 769
BanII GRGCYC 3 cut(s) 201, 646, 789
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 3 cut(s) 201, 646, 939
BbvI GCAGC 2 cut(s) 618, 1095
BccI CCATC 9 cut(s) 269, 459, 560, 626, 731, 859, 901, 1232, 1330
BceAI ACGGC 5 cut(s) 224, 269, 473, 820, 1058
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 6 cut(s) 158, 446, 466, 815, 1315, 1321
BcoDI GTCTC 1 cut(s) 1164
BfoI RGCGCY 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 493
BisI GCNGC 4 cut(s) 247, 604, 607, 1109
BlpI GCTNAGC 1 cut(s) 992
BlsI GCNGC 4 cut(s) 248, 605, 608, 1110
Bme18I GGWCC 6 cut(s) 448, 715, 746, 776, 985, 1149
BmeT110I CYCGRG 4 cut(s) 384, 501, 658, 1040
BmsI GCATC 3 cut(s) 21, 32, 1344
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 2 cut(s) 206, 335
Bpu1102I GCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 1119
BsaHI GRCGYC 3 cut(s) 125, 282, 601
BsaJI CCNNGG 8 cut(s) 16, 120, 384, 444, 501, 624, 813, 1319
BsaWI WCCGGW 4 cut(s) 476, 634, 669, 712
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 404, 434, 1049, 1079, 1259, 1289
Bse118I RCCGGY 2 cut(s) 669, 712
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 6 cut(s) 158, 446, 466, 815, 1315, 1321
BseDI CCNNGG 8 cut(s) 16, 120, 384, 444, 501, 624, 813, 1319
BseGI GGATG 5 cut(s) 12, 511, 543, 828, 1359
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 5 cut(s) 113, 149, 894, 1006, 1044
BseSI GKGCMC 1 cut(s) 789
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 618, 1095
BsgI GTGCAG 1 cut(s) 1247
Bsh1236I CGCG 3 cut(s) 294, 626, 734
Bsh1285I CGRYCG 3 cut(s) 247, 292, 1216
BshNI GGYRCC 1 cut(s) 769
BshTI ACCGGT 2 cut(s) 669, 712
BsiEI CGRYCG 3 cut(s) 247, 292, 1216
BsiHKAI GWGCWC 3 cut(s) 201, 646, 939
BsiHKCI CYCGRG 4 cut(s) 384, 501, 658, 1040
BsmAI GTCTC 1 cut(s) 1164
BsmBI CGTCTC 1 cut(s) 1164
BsoBI CYCGRG 4 cut(s) 384, 501, 658, 1040
Bsp120I GGGCCC 1 cut(s) 785
Bsp1286I GDGCHC 4 cut(s) 201, 646, 789, 939
Bsp1407I TGTACA 1 cut(s) 1065
Bsp143I GATC 5 cut(s) 138, 392, 493, 704, 1017
Bsp1720I GCTNAGC 1 cut(s) 992
BspCNI CTCAG 5 cut(s) 112, 148, 895, 1005, 1045
BspFNI CGCG 3 cut(s) 294, 626, 734
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 4 cut(s) 387, 400, 699, 712
BspT107I GGYRCC 1 cut(s) 769
BsrBI CCGCTC 3 cut(s) 134, 576, 615
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 2 cut(s) 669, 712
BsrGI TGTACA 1 cut(s) 1065
BssAI RCCGGY 2 cut(s) 669, 712
BssECI CCNNGG 8 cut(s) 16, 120, 384, 444, 501, 624, 813, 1319
BssMI GATC 5 cut(s) 138, 392, 493, 704, 1017
BssNI GRCGYC 3 cut(s) 125, 282, 601
Bst2UI CCWGG 6 cut(s) 158, 446, 466, 815, 1315, 1321
Bst4CI ACNGT 4 cut(s) 943, 1214, 1291, 1366
Bst6I CTCTTC 4 cut(s) 56, 228, 371, 1254
BstACI GRCGYC 3 cut(s) 125, 282, 601
BstAUI TGTACA 1 cut(s) 1065
BstC8I GCNNGC 3 cut(s) 192, 471, 998
BstDEI CTNAG 7 cut(s) 99, 135, 903, 992, 1053, 1302, 1358
BstDSI CCRYGG 2 cut(s) 16, 624
BstF5I GGATG 5 cut(s) 12, 511, 543, 828, 1359
BstFNI CGCG 3 cut(s) 294, 626, 734
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 3 cut(s) 23, 318, 1009
BstKTI GATC 5 cut(s) 141, 395, 496, 707, 1020
BstMAI GTCTC 1 cut(s) 1164
BstMBI GATC 5 cut(s) 138, 392, 493, 704, 1017
BstMCI CGRYCG 3 cut(s) 247, 292, 1216
BstNI CCWGG 6 cut(s) 158, 446, 466, 815, 1315, 1321
BstNSI RCATGY 1 cut(s) 1350
BstSLI GKGCMC 1 cut(s) 789
BstUI CGCG 3 cut(s) 294, 626, 734
BstV1I GCAGC 2 cut(s) 618, 1095
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 3 cut(s) 392, 493, 704
BstYI RGATCY 3 cut(s) 392, 493, 704
BstZI CGGCCG 1 cut(s) 244
BtgI CCRYGG 2 cut(s) 16, 624
BtsCI GGATG 5 cut(s) 12, 511, 543, 828, 1359
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 414, 939
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 192, 471, 998
CfoI GCGC 3 cut(s) 23, 318, 1009
Cfr10I RCCGGY 2 cut(s) 669, 712
Cfr42I CCGCGG 1 cut(s) 627
Cfr9I CCCGGG 2 cut(s) 384, 501
CseI GACGC 5 cut(s) 114, 290, 445, 609, 740
Csp6I GTAC 3 cut(s) 1024, 1066, 1362
CspAI ACCGGT 2 cut(s) 669, 712
CviAII CATG 2 cut(s) 1021, 1347
CviQI GTAC 3 cut(s) 1024, 1066, 1362
DdeI CTNAG 7 cut(s) 99, 135, 903, 992, 1053, 1302, 1358
DpnI GATC 5 cut(s) 140, 394, 495, 706, 1019
DpnII GATC 5 cut(s) 138, 392, 493, 704, 1017
EaeI YGGCCR 3 cut(s) 192, 244, 805
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 4 cut(s) 56, 228, 371, 1254
EarI CTCTTC 4 cut(s) 56, 228, 371, 1254
EciI GGCGGA 3 cut(s) 412, 884, 1271
Ecl136II GAGCTC 2 cut(s) 199, 644
EclXI CGGCCG 1 cut(s) 244
Eco24I GRGCYC 3 cut(s) 201, 646, 789
Eco47I GGWCC 6 cut(s) 448, 715, 746, 776, 985, 1149
Eco47III AGCGCT 1 cut(s) 317
Eco52I CGGCCG 1 cut(s) 244
Eco53kI GAGCTC 2 cut(s) 199, 644
Eco88I CYCGRG 4 cut(s) 384, 501, 658, 1040
EcoICRI GAGCTC 2 cut(s) 199, 644
EcoO109I RGGNCCY 3 cut(s) 211, 785, 786
EcoRI GAATTC 1 cut(s) 1375
EcoRII CCWGG 6 cut(s) 156, 444, 464, 813, 1313, 1319
EcoT38I GRGCYC 3 cut(s) 201, 646, 789
Esp3I CGTCTC 1 cut(s) 1164
FaeI CATG 2 cut(s) 1024, 1350
FaiI YATR 8 cut(s) 933, 968, 1022, 1064, 1101, 1183, 1206, 1348
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 1020, 1346
FauI CCCGC 4 cut(s) 581, 691, 696, 1306
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 247, 604, 607, 1109
FokI GGATG 4 cut(s) 498, 530, 815, 1366
FriOI GRGCYC 3 cut(s) 201, 646, 789
Fsp4HI GCNGC 4 cut(s) 247, 604, 607, 1109
GlaI GCGC 3 cut(s) 22, 317, 1008
GluI GCNGC 4 cut(s) 247, 604, 607, 1109
GsuI CTGGAG 2 cut(s) 206, 335
HaeII RGCGCY 1 cut(s) 319
HgaI GACGC 5 cut(s) 114, 290, 445, 609, 740
HhaI GCGC 3 cut(s) 23, 318, 1009
Hin1I GRCGYC 3 cut(s) 125, 282, 601
Hin1II CATG 2 cut(s) 1024, 1350
Hin6I GCGC 3 cut(s) 21, 316, 1007
HinP1I GCGC 3 cut(s) 21, 316, 1007
HincII GTYRAC 2 cut(s) 289, 655
HindII GTYRAC 2 cut(s) 289, 655
HinfI GANTC 6 cut(s) 173, 226, 518, 540, 1036, 1268
HphI GGTGA 7 cut(s) 250, 491, 613, 702, 829, 1105, 1378
Hpy166II GTNNAC 4 cut(s) 129, 289, 655, 1386
Hpy8I GTNNAC 4 cut(s) 129, 289, 655, 1386
HpyAV CCTTC 4 cut(s) 176, 202, 478, 1084
HpyCH4III ACNGT 4 cut(s) 943, 1214, 1291, 1366
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 1 cut(s) 1228
HpyF3I CTNAG 7 cut(s) 99, 135, 903, 992, 1053, 1302, 1358
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 3 cut(s) 125, 282, 601
Hsp92II CATG 2 cut(s) 1024, 1350
HspAI GCGC 3 cut(s) 21, 316, 1007
KspI CCGCGG 1 cut(s) 627
Kzo9I GATC 5 cut(s) 138, 392, 493, 704, 1017
Lsp1109I GCAGC 2 cut(s) 618, 1095
LweI GCATC 3 cut(s) 21, 32, 1344
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 523, 854
MalI GATC 5 cut(s) 140, 394, 495, 706, 1019
MbiI CCGCTC 3 cut(s) 134, 576, 615
MboI GATC 5 cut(s) 138, 392, 493, 704, 1017
MflI RGATCY 3 cut(s) 392, 493, 704
MhlI GDGCHC 4 cut(s) 201, 646, 789, 939
MluCI AATT 3 cut(s) 883, 1331, 1375
MluI ACGCGT 1 cut(s) 732
MlyI GAGTC 5 cut(s) 167, 220, 512, 549, 1277
MmeI TCCRAC 6 cut(s) 171, 370, 420, 1196, 1331, 1348
MroXI GAANNNNTTC 1 cut(s) 824
MseI TTAA 2 cut(s) 887, 1155
MspA1I CMGCKG 1 cut(s) 626
MvaI CCWGG 6 cut(s) 158, 446, 466, 815, 1315, 1321
MvnI CGCG 3 cut(s) 294, 626, 734
NdeII GATC 5 cut(s) 138, 392, 493, 704, 1017
NlaIII CATG 2 cut(s) 1024, 1350
NmeAIII GCCGAG 2 cut(s) 101, 220
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 1350
PcsI WCGNNNNNNNCGW 3 cut(s) 237, 285, 396
PdmI GAANNNNTTC 1 cut(s) 824
PfeI GAWTC 1 cut(s) 1036
PflFI GACNNNGTC 2 cut(s) 284, 539
PfoI TCCNGGA 1 cut(s) 742
PinAI ACCGGT 2 cut(s) 669, 712
PkrI GCNGC 4 cut(s) 248, 605, 608, 1110
PleI GAGTC 5 cut(s) 167, 220, 512, 548, 1276
PpsI GAGTC 5 cut(s) 167, 220, 512, 548, 1276
Psp124BI GAGCTC 2 cut(s) 201, 646
Psp6I CCWGG 6 cut(s) 156, 444, 464, 813, 1313, 1319
PspGI CCWGG 6 cut(s) 156, 444, 464, 813, 1313, 1319
PspOMI GGGCCC 1 cut(s) 785
PsuI RGATCY 3 cut(s) 392, 493, 704
PsyI GACNNNGTC 2 cut(s) 284, 539
RsaI GTAC 3 cut(s) 1025, 1067, 1363
RsaNI GTAC 3 cut(s) 1024, 1066, 1362
SacI GAGCTC 2 cut(s) 201, 646
SacII CCGCGG 1 cut(s) 627
SalI GTCGAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 887, 1155
SatI GCNGC 4 cut(s) 247, 604, 607, 1109
Sau3AI GATC 5 cut(s) 138, 392, 493, 704, 1017
SchI GAGTC 5 cut(s) 167, 220, 512, 549, 1277
SduI GDGCHC 4 cut(s) 201, 646, 789, 939
SfaNI GCATC 3 cut(s) 21, 32, 1344
Sfr303I CCGCGG 1 cut(s) 627
SgrBI CCGCGG 1 cut(s) 627
SinI GGWCC 6 cut(s) 448, 715, 746, 776, 985, 1149
SmaI CCCGGG 2 cut(s) 386, 503
SmlI CTYRAG 1 cut(s) 1134
SmoI CTYRAG 1 cut(s) 1134
Sse9I AATT 3 cut(s) 883, 1331, 1375
SstI GAGCTC 2 cut(s) 201, 646
TaaI ACNGT 4 cut(s) 943, 1214, 1291, 1366
TaiI ACGT 1 cut(s) 375
TaqI TCGA 8 cut(s) 171, 204, 231, 288, 300, 327, 555, 1191
TasI AATT 3 cut(s) 883, 1331, 1375
TatI WGTACW 2 cut(s) 1023, 1065
TauI GCSGC 2 cut(s) 249, 606
TfiI GAWTC 1 cut(s) 1036
Tru1I TTAA 2 cut(s) 887, 1155
Tru9I TTAA 2 cut(s) 887, 1155
TscAI CASTG 2 cut(s) 421, 946
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 2 cut(s) 606, 1108
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 500, 817, 1116
TspGWI ACGGA 9 cut(s) 5, 142, 511, 552, 568, 998, 1141, 1213, 1223
TspMI CCCGGG 2 cut(s) 384, 501
TspRI CASTG 2 cut(s) 421, 946
Tth111I GACNNNGTC 2 cut(s) 284, 539
VpaK11BI GGWCC 6 cut(s) 448, 715, 746, 776, 985, 1149
XapI RAATTY 2 cut(s) 883, 1375
XceI RCATGY 1 cut(s) 1350
XcmI CCANNNNNNNNNTGG 2 cut(s) 154, 1126
XmaI CCCGGG 2 cut(s) 384, 501
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.