Rmu_sc0000348.1_g000001

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000348.1
Physical Location & Seq
Reverse (-)
1 .. 2258
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000348.1_g000001.1.cds

Sequence Viewer

Length: 1441 bp
atggactctcacatctatggtcgctcctccctctcctcctcctccttcttcttcgtcgtcttcctcactctcttctcactctcctccgccgccgcattgcctcgcaacccaaaacccttgccccccaaatccaactcctccgcccagataaactccaactccgtcctcgtcgccctcctcgactcgcattacaccgagctcgccgagctcgtcgagaaggccctgcttctccagaccctcgaggaagccgtaggccagcacaacataaccatcttcgcgcccagaaatgaggccttggagcgccaattggaccccgaattcaagcgcttcttgctcgaacccggtaacttgaagtccctccagaccctcctcatgttccacattatccccagccgtatcgggtccactcagtggcccaaggattccgggtcgggtcgccaccgcaccctctgtaaaaacgagcatctccacctctccagcaaagactccggcaacaaaaaggctgtggactccgcggaggttgtccgacccgacgacgtgatccgacccgacggcctgatccacggaatcgaaagagtcctaattcctcgctcagtgcaagaagacttcaaccggagaagaagtttacggtcgatttccgcggttatacccgagggtgccccggaagtggatccgagaacccaccgactgaagaaacccgcaccggcagtacccgccggagccccaccggttctgcccatttacgacgctttggcgccgggtccttctctagctccggctccggcacccggacccggcggtccccgccaccacttcgacggcatgagccaggttaaggacttcatccacacccttttgcattacggcgggtacaacgaaatggccgatattctggtaaacctgacctcgctggcgacggagatgggccggttagtctcagagggttacgttctgacggttttggcgccaaatgatgaggcgatggcgaagctgacgacggaccaattgagcgaaccgggtgcgccggagcagattgtttactatcatatcataccggaataccaaacggaggagagtatgtacaactccgtcaggagattcgggaaggtgcaatacgatacgctgaggctgccgcacagggttgtggcccaggaggctgatgggtcggtgaaattcgggtcgggcgatgtgtcggcgtatcttttcgacccggatatctatacggatggtcggatttcggtgcaaggtattgatgaggttctgtttccggttgaagaagagaagaaagcaactccggttgttaaggccgccgctgctaagcccagaagagtcataatcttgggaggagtggaagcttgggaaatggagcagtccgatggccactgtcggtggtgcgaagttaaaattgatgtgtcacgggtcctttggggccaggagaagg
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

52.95

Weight (kDa)

6.0

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 798
AbsI CCTCGAGG 1 cut(s) 239
AccB1I GGYRCC 4 cut(s) 656, 754, 784, 964
AccB7I CCANNNNNTGG 1 cut(s) 411
AccII CGCG 3 cut(s) 278, 515, 641
AclWI GGATC 4 cut(s) 535, 553, 665, 678
AcoI YGGCCR 2 cut(s) 882, 1378
AcsI RAATTY 2 cut(s) 317, 1172
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 2 cut(s) 755, 965
AdeI CACNNNGTG 1 cut(s) 411
AfaI GTAC 3 cut(s) 711, 872, 1082
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 7 cut(s) 411, 667, 788, 794, 835, 1069, 1438
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 4 cut(s) 322, 352, 610, 1274
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 828, 1149, 1431
AluBI AGCT 5 cut(s) 199, 208, 773, 991, 1355
AluI AGCT 5 cut(s) 199, 208, 773, 991, 1355
Alw21I GWGCWC 2 cut(s) 201, 210
Alw26I GTCTC 1 cut(s) 940
AlwI GGATC 4 cut(s) 535, 553, 665, 678
Ama87I CYCGRG 2 cut(s) 239, 650
Aor51HI AGCGCT 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 1129, 1313
ApoI RAATTY 2 cut(s) 317, 1172
AsiGI ACCGGT 1 cut(s) 727
AspLEI GCGC 6 cut(s) 280, 303, 327, 757, 967, 1024
AsuC2I CCSGG 8 cut(s) 342, 427, 662, 759, 789, 795, 1017, 1211
AsuHPI GGTGA 1 cut(s) 1180
AvaI CYCGRG 2 cut(s) 239, 650
AvaII GGWCC 7 cut(s) 310, 402, 761, 791, 800, 1000, 1420
BaeGI GKGCMC 1 cut(s) 661
BalI TGGCCA 1 cut(s) 1380
BamHI GGATCC 1 cut(s) 670
BanI GGYRCC 4 cut(s) 656, 754, 784, 964
BanII GRGCYC 3 cut(s) 201, 210, 724
BarI GAAGNNNNNNTAC 2 cut(s) 1097, 1129
BbsI GAAGAC 2 cut(s) 52, 609
Bbv12I GWGCWC 2 cut(s) 201, 210
BbvCI CCTCAGC 1 cut(s) 1124
BbvI GCAGC 2 cut(s) 1116, 1300
BccI CCATC 6 cut(s) 278, 916, 976, 1154, 1220, 1370
BceAI ACGGC 5 cut(s) 233, 378, 568, 835, 880
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BciT130I CCWGG 3 cut(s) 830, 1151, 1433
BcnI CCSGG 8 cut(s) 342, 427, 662, 759, 789, 795, 1017, 1211
BcoDI GTCTC 1 cut(s) 940
BfaI CTAG 1 cut(s) 770
BfoI RGCGCY 4 cut(s) 304, 328, 758, 968
BglI GCCNNNNNGGC 1 cut(s) 1154
BisI GCNGC 7 cut(s) 90, 93, 1130, 1133, 1308, 1311, 1314
BlpI GCTNAGC 1 cut(s) 1317
BlsI GCNGC 7 cut(s) 91, 94, 1131, 1134, 1309, 1312, 1315
Bme18I GGWCC 7 cut(s) 310, 402, 761, 791, 800, 1000, 1420
BmeT110I CYCGRG 2 cut(s) 239, 650
BmgBI CACGTC 1 cut(s) 538
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 2 cut(s) 52, 609
BpmI CTGGAG 3 cut(s) 215, 344, 460
Bpu10I CCTNAGC 1 cut(s) 1124
Bpu1102I GCTNAGC 1 cut(s) 1317
BpuMI CCSGG 8 cut(s) 342, 427, 662, 759, 789, 795, 1017, 1211
BsaHI GRCGYC 2 cut(s) 755, 965
BsaJI CCNNGG 8 cut(s) 294, 417, 513, 562, 639, 651, 660, 1149
BsaWI WCCGGW 5 cut(s) 612, 727, 1054, 1267, 1294
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 607, 637, 1064, 1094
Bsc4I CCNNNNNNNGG 7 cut(s) 411, 667, 788, 794, 835, 1069, 1438
Bse118I RCCGGY 3 cut(s) 703, 727, 927
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 3 cut(s) 830, 1151, 1433
BseDI CCNNGG 8 cut(s) 294, 417, 513, 562, 639, 651, 660, 1149
BseGI GGATG 2 cut(s) 843, 1231
BseLI CCNNNNNNNGG 7 cut(s) 411, 667, 788, 794, 835, 1069, 1438
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 4 cut(s) 422, 606, 951, 1115
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 2 cut(s) 1116, 1300
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 3 cut(s) 278, 515, 641
Bsh1285I CGRYCG 1 cut(s) 632
BshNI GGYRCC 4 cut(s) 656, 754, 784, 964
BshTI ACCGGT 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 201, 210
BsiHKCI CYCGRG 2 cut(s) 239, 650
BslFI GGGAC 2 cut(s) 340, 786
BslI CCNNNNNNNGG 7 cut(s) 411, 667, 788, 794, 835, 1069, 1438
BsmAI GTCTC 1 cut(s) 940
BsmFI GGGAC 2 cut(s) 340, 786
BsoBI CYCGRG 2 cut(s) 239, 650
Bsp1286I GDGCHC 4 cut(s) 201, 210, 661, 724
Bsp1407I TGTACA 1 cut(s) 1080
Bsp143I GATC 3 cut(s) 540, 558, 670
Bsp1720I GCTNAGC 1 cut(s) 1317
BspCNI CTCAG 4 cut(s) 421, 605, 950, 1116
BspFNI CGCG 3 cut(s) 278, 515, 641
BspPI GGATC 4 cut(s) 535, 553, 665, 678
BspT107I GGYRCC 4 cut(s) 656, 754, 784, 964
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 3 cut(s) 703, 727, 927
BsrGI TGTACA 1 cut(s) 1080
BssAI RCCGGY 3 cut(s) 703, 727, 927
BssECI CCNNGG 8 cut(s) 294, 417, 513, 562, 639, 651, 660, 1149
BssMI GATC 3 cut(s) 540, 558, 670
BssNI GRCGYC 2 cut(s) 755, 965
BssT1I CCWWGG 2 cut(s) 294, 417
Bst2UI CCWGG 3 cut(s) 830, 1151, 1433
Bst4CI ACNGT 3 cut(s) 630, 958, 1385
Bst6I CTCTTC 3 cut(s) 77, 1272, 1321
BstACI GRCGYC 2 cut(s) 755, 965
BstAUI TGTACA 1 cut(s) 1080
BstC8I GCNNGC 3 cut(s) 201, 257, 912
BstDEI CTNAG 5 cut(s) 408, 592, 937, 1124, 1317
BstDSI CCRYGG 3 cut(s) 513, 562, 639
BstF5I GGATG 2 cut(s) 843, 1231
BstFNI CGCG 3 cut(s) 278, 515, 641
BstH2I RGCGCY 4 cut(s) 304, 328, 758, 968
BstHHI GCGC 6 cut(s) 280, 303, 327, 757, 967, 1024
BstKTI GATC 3 cut(s) 543, 561, 673
BstMAI GTCTC 1 cut(s) 940
BstMBI GATC 3 cut(s) 540, 558, 670
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 7 cut(s) 205, 331, 713, 804, 1129, 1154, 1313
BstNI CCWGG 3 cut(s) 830, 1151, 1433
BstSLI GKGCMC 1 cut(s) 661
BstUI CGCG 3 cut(s) 278, 515, 641
BstV1I GCAGC 2 cut(s) 1116, 1300
BstV2I GAAGAC 2 cut(s) 52, 609
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BtgI CCRYGG 3 cut(s) 513, 562, 639
BtgZI GCGATG 2 cut(s) 995, 1200
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 2 cut(s) 843, 1231
BtsIMutI CAGTG 3 cut(s) 416, 600, 1381
Cac8I GCNNGC 3 cut(s) 201, 257, 912
CfoI GCGC 6 cut(s) 280, 303, 327, 757, 967, 1024
Cfr10I RCCGGY 3 cut(s) 703, 727, 927
Cfr42I CCGCGG 2 cut(s) 516, 642
CseI GACGC 1 cut(s) 755
Csp6I GTAC 3 cut(s) 710, 871, 1081
CspAI ACCGGT 1 cut(s) 727
CviAII CATG 2 cut(s) 373, 823
CviQI GTAC 3 cut(s) 710, 871, 1081
DdeI CTNAG 5 cut(s) 408, 592, 937, 1124, 1317
DinI GGCGCC 2 cut(s) 756, 966
DpnI GATC 3 cut(s) 542, 560, 672
DpnII GATC 3 cut(s) 540, 558, 670
DraIII CACNNNGTG 1 cut(s) 411
DrdI GACNNNNNNGTC 1 cut(s) 798
DseDI GACNNNNNNGTC 1 cut(s) 798
EaeI YGGCCR 2 cut(s) 882, 1378
Eam1104I CTCTTC 3 cut(s) 77, 1272, 1321
EarI CTCTTC 3 cut(s) 77, 1272, 1321
EciI GGCGGA 2 cut(s) 76, 130
Ecl136II GAGCTC 2 cut(s) 199, 208
Eco130I CCWWGG 2 cut(s) 294, 417
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 3 cut(s) 201, 210, 724
Eco32I GATATC 1 cut(s) 1216
Eco47I GGWCC 7 cut(s) 310, 402, 761, 791, 800, 1000, 1420
Eco47III AGCGCT 1 cut(s) 326
Eco53kI GAGCTC 2 cut(s) 199, 208
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 2 cut(s) 239, 650
EcoICRI GAGCTC 2 cut(s) 199, 208
EcoO109I RGGNCCY 3 cut(s) 220, 761, 1420
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 828, 1149, 1431
EcoRV GATATC 1 cut(s) 1216
EcoT14I CCWWGG 2 cut(s) 294, 417
EcoT38I GRGCYC 3 cut(s) 201, 210, 724
EgeI GGCGCC 2 cut(s) 756, 966
EheI GGCGCC 2 cut(s) 756, 966
ErhI CCWWGG 2 cut(s) 294, 417
FaeI CATG 2 cut(s) 376, 826
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 2 cut(s) 340, 786
FatI CATG 2 cut(s) 372, 822
FauI CCCGC 4 cut(s) 706, 721, 812, 860
Fnu4HI GCNGC 7 cut(s) 90, 93, 1130, 1133, 1308, 1311, 1314
FokI GGATG 2 cut(s) 830, 1238
FriOI GRGCYC 3 cut(s) 201, 210, 724
Fsp4HI GCNGC 7 cut(s) 90, 93, 1130, 1133, 1308, 1311, 1314
FspBI CTAG 1 cut(s) 770
GlaI GCGC 6 cut(s) 279, 302, 326, 756, 966, 1023
GluI GCNGC 7 cut(s) 90, 93, 1130, 1133, 1308, 1311, 1314
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 3 cut(s) 215, 344, 460
HaeII RGCGCY 4 cut(s) 304, 328, 758, 968
HgaI GACGC 1 cut(s) 755
HhaI GCGC 6 cut(s) 280, 303, 327, 757, 967, 1024
Hin1I GRCGYC 2 cut(s) 755, 965
Hin1II CATG 2 cut(s) 376, 826
Hin6I GCGC 6 cut(s) 278, 301, 325, 755, 965, 1022
HinP1I GCGC 6 cut(s) 278, 301, 325, 755, 965, 1022
HindIII AAGCTT 1 cut(s) 1353
HinfI GANTC 9 cut(s) 5, 182, 422, 485, 509, 567, 576, 1098, 1329
HphI GGTGA 1 cut(s) 1180
Hpy166II GTNNAC 5 cut(s) 405, 508, 626, 898, 1039
Hpy188I TCNGA 7 cut(s) 527, 545, 675, 940, 954, 1233, 1375
Hpy188III TCNNGA 5 cut(s) 214, 232, 361, 1093, 1102
Hpy8I GTNNAC 5 cut(s) 405, 508, 626, 898, 1039
HpyAV CCTTC 5 cut(s) 55, 211, 774, 1099, 1432
HpyCH4III ACNGT 3 cut(s) 630, 958, 1385
HpyCH4IV ACGT 2 cut(s) 537, 948
HpyCH4V TGCA 4 cut(s) 598, 859, 1111, 1243
HpyF10VI GCNNNNNNNGC 7 cut(s) 205, 331, 713, 804, 1129, 1154, 1313
HpyF3I CTNAG 5 cut(s) 408, 592, 937, 1124, 1317
HpySE526I ACGT 2 cut(s) 537, 948
Hsp92I GRCGYC 2 cut(s) 755, 965
Hsp92II CATG 2 cut(s) 376, 826
HspAI GCGC 6 cut(s) 278, 301, 325, 755, 965, 1022
KasI GGCGCC 2 cut(s) 754, 964
KspI CCGCGG 2 cut(s) 516, 642
Kzo9I GATC 3 cut(s) 540, 558, 670
LmnI GCTCC 7 cut(s) 29, 298, 719, 778, 784, 1027, 1366
Lsp1109I GCAGC 2 cut(s) 1116, 1300
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 770
MaeII ACGT 2 cut(s) 537, 948
MaeIII GTNAC 3 cut(s) 344, 944, 1413
MalI GATC 3 cut(s) 542, 560, 672
MboI GATC 3 cut(s) 540, 558, 670
MfeI CAATTG 2 cut(s) 305, 1004
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 4 cut(s) 201, 210, 661, 724
MlsI TGGCCA 1 cut(s) 1380
MluCI AATT 6 cut(s) 305, 317, 582, 1004, 1172, 1404
MluNI TGGCCA 1 cut(s) 1380
Mly113I GGCGCC 2 cut(s) 755, 965
MlyI GAGTC 5 cut(s) 176, 479, 503, 585, 1338
MmeI TCCRAC 5 cut(s) 156, 180, 550, 568, 1211
Mox20I TGGCCA 1 cut(s) 1380
MscI TGGCCA 1 cut(s) 1380
MseI TTAA 3 cut(s) 834, 1302, 1401
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 1380
MspA1I CMGCKG 3 cut(s) 515, 641, 1313
MunI CAATTG 2 cut(s) 305, 1004
MvaI CCWGG 3 cut(s) 830, 1151, 1433
MvnI CGCG 3 cut(s) 278, 515, 641
MwoI GCNNNNNNNGC 7 cut(s) 205, 331, 713, 804, 1129, 1154, 1313
NarI GGCGCC 2 cut(s) 755, 965
NciI CCSGG 8 cut(s) 342, 427, 662, 759, 789, 795, 1017, 1211
NdeII GATC 3 cut(s) 540, 558, 670
NlaIII CATG 2 cut(s) 376, 826
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 1413
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 293
PcsI WCGNNNNNNNCGW 5 cut(s) 177, 207, 246, 882, 1182
PfeI GAWTC 3 cut(s) 422, 567, 1098
PflMI CCANNNNNTGG 1 cut(s) 411
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 7 cut(s) 91, 94, 1131, 1134, 1309, 1312, 1315
PleI GAGTC 5 cut(s) 176, 479, 503, 584, 1337
PluTI GGCGCC 2 cut(s) 758, 968
PpsI GAGTC 5 cut(s) 176, 479, 503, 584, 1337
PpuMI RGGWCCY 2 cut(s) 761, 1420
Psp124BI GAGCTC 2 cut(s) 201, 210
Psp5II RGGWCCY 2 cut(s) 761, 1420
Psp6I CCWGG 3 cut(s) 828, 1149, 1431
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 828, 1149, 1431
PspPPI RGGWCCY 2 cut(s) 761, 1420
PspXI VCTCGAGB 1 cut(s) 239
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 3 cut(s) 711, 872, 1082
RsaNI GTAC 3 cut(s) 710, 871, 1081
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 2 cut(s) 201, 210
SacII CCGCGG 2 cut(s) 516, 642
SaqAI TTAA 3 cut(s) 834, 1302, 1401
SatI GCNGC 7 cut(s) 90, 93, 1130, 1133, 1308, 1311, 1314
Sau3AI GATC 3 cut(s) 540, 558, 670
SchI GAGTC 5 cut(s) 176, 479, 503, 585, 1338
SduI GDGCHC 4 cut(s) 201, 210, 661, 724
SfaNI GCATC 1 cut(s) 472
SfoI GGCGCC 2 cut(s) 756, 966
Sfr274I CTCGAG 1 cut(s) 239
Sfr303I CCGCGG 2 cut(s) 516, 642
SgrBI CCGCGG 2 cut(s) 516, 642
SinI GGWCC 7 cut(s) 310, 402, 761, 791, 800, 1000, 1420
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 6 cut(s) 305, 317, 582, 1004, 1172, 1404
SseBI AGGCCT 1 cut(s) 293
SspDI GGCGCC 2 cut(s) 754, 964
SspMI CTAG 1 cut(s) 770
SstI GAGCTC 2 cut(s) 201, 210
StuI AGGCCT 1 cut(s) 293
StyI CCWWGG 2 cut(s) 294, 417
TaaI ACNGT 3 cut(s) 630, 958, 1385
TaiI ACGT 2 cut(s) 540, 951
TaqI TCGA 8 cut(s) 180, 213, 240, 336, 570, 632, 816, 1206
TasI AATT 6 cut(s) 305, 317, 582, 1004, 1172, 1404
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 5 cut(s) 92, 95, 1135, 1310, 1313
TfiI GAWTC 3 cut(s) 422, 567, 1098
Tru1I TTAA 3 cut(s) 834, 1302, 1401
Tru9I TTAA 3 cut(s) 834, 1302, 1401
TscAI CASTG 3 cut(s) 416, 600, 1388
TseFI GTSAC 1 cut(s) 1413
TseI GCWGC 2 cut(s) 1129, 1313
Tsp45I GTSAC 1 cut(s) 1413
TspDTI ATGAA 1 cut(s) 832
TspGWI ACGGA 7 cut(s) 151, 579, 932, 1013, 1078, 1082, 1238
TspRI CASTG 3 cut(s) 416, 600, 1388
Van91I CCANNNNNTGG 1 cut(s) 411
VpaK11BI GGWCC 7 cut(s) 310, 402, 761, 791, 800, 1000, 1420
XapI RAATTY 2 cut(s) 317, 1172
XcmI CCANNNNNNNNNTGG 1 cut(s) 1157
XhoI CTCGAG 1 cut(s) 239
XspI CTAG 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.