Rw5G030520

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
48495599 .. 48500446
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030520.1

Sequence Viewer

Length: 1395 bp
ATGGATTTACTCATCCGTGGCGCATCGGCGCTCACCTTTCTCCTCCTCTTCTTCGCCGGAACCTGCTTCGCATTGCCGGAATATCCTCAGAAGCCCTCCTCGTCCTCGTCCTCGGCGGCGTCCACCGCTCAGATCAACTCCAACTCCGTCCTGGTGGCCCTTCTCGACTCGCATTACTCCGAGCTGGCCGAGCTCGTCGAGAAGGCGCTGCTCCTGCAGACTCTCGAAGAGGCCGTCGGCCGCCACAACATCACCATCTTCGCTCCCCGAAACGACGCCGTCGACCGCGACCTCGACCCCGACTTCAAGCGCTACTTGCTCGAACCCGGGAACCTCAAATCGCTCCAGAAGCTCCTCCTCTTCCACGTTATCCCCGCCCGGGTCGGATCCGACGAATGGCCCACCCACACTGCCTCCGCCCGACACCAGACGCTCTCCCTGGACCATCTCCACTTGTCCAGCCTCGCTTCCGGTGAGAGGGCTGTAGATCTCGCCCGGGTCATTCATCCCGACTCCGTGACCCGACCCGACGGAGTCATCCACGCCATCGAGAGGCTTCTTATCCCCCGCTCCGTAGAGGACGACTTCAACCGACGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCGGAGGGAGCCCCCGAAGTTGACCCCAGAACCAACCGGCTGAAAAAACCCGCCCCGCCGACCAAACCCGGATCCTCACCGGTGCTGCCCATCTACGACGCGTTGGCTCCCGGGCCCTCGTTGGCTCCGGCTCCGGCACCCGGACCCGGCGGGCCCCAGCACCACTTCAACGGCCACGCCCAGGTGAAGGACTTCATCCAAACACTCTTGCACTACGGGGGTTACAACGAGATGGCGGACATTTTGGTAAATTTAACTTCTCTGGCTACGGAGATGGGTCGGTTAGTATCGGAGGGTTATGTGCTCACTGTTTTGGCTCCGAACGACGAGGCTATGGCGAAGCTGACGACGGACCAGCTCAGCGAGCCGGGTGCGCCGGAGCAGATCATGTACTACCATTTGATTCCCGAGTATCAGACTGAGGAGAGTATGTACAATGCCGTTAGGAGGTTCGGGAAGGTGAGCTATGAAACGCTGCGGTTGCCCAACAAGGTTGTGGCTCAAGAGGCTGATGGGTCCGTTAAGTTCGGGCAGGGAGACGGGTCGGCATACTTGTTCGACCCGGATATTTATACGGATGGTCGGATTTCCGTGCAGGGGATTGATGGCGTTTTGTTCCCGGCGGAAGAGGTGGAGTCCAAGTCCGAAACCAAAACGGTTCAGCCCGCTAAGATCGTTGCCAGGCCAAGGAGAGGAAAATTGATGGAAGTAGCATGTCGGATGCTAAGTACCGTTGGACAGAATTCTCGGTTCACCACTTGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

50.75

Weight (kDa)

5.89

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 58 - 189 2e-19 Fasciclin domain
Fasciclin PF02469 306 - 416 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 763
AccBSI CCGCTC 3 cut(s) 128, 570, 609
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 288, 728
AclWI GGATC 4 cut(s) 381, 394, 693, 706
AcoI YGGCCR 3 cut(s) 186, 238, 799
AcsI RAATTY 2 cut(s) 877, 1369
AcyI GRCGYC 3 cut(s) 119, 276, 595
AfaI GTAC 3 cut(s) 1019, 1061, 1357
AfeI AGCGCT 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 726
AgeI ACCGGT 1 cut(s) 706
AgsI TTSAA 3 cut(s) 307, 589, 796
AjnI CCWGG 4 cut(s) 150, 438, 807, 1307
AluBI AGCT 6 cut(s) 184, 193, 352, 970, 985, 1092
AluI AGCT 6 cut(s) 184, 193, 352, 970, 985, 1092
Alw21I GWGCWC 2 cut(s) 195, 933
Alw26I GTCTC 1 cut(s) 1158
AlwI GGATC 4 cut(s) 381, 394, 693, 706
Ama87I CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 9 cut(s) 156, 186, 231, 238, 398, 740, 779, 799, 1310
ApaI GGGCCC 2 cut(s) 744, 783
ApeKI GCWGC 4 cut(s) 208, 600, 712, 1102
ApoI RAATTY 2 cut(s) 877, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AsiGI ACCGGT 1 cut(s) 706
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 5 cut(s) 23, 31, 208, 312, 1003
AsuHPI GGTGA 8 cut(s) 25, 244, 485, 607, 696, 823, 1099, 1372
AvaI CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
AvaII GGWCC 4 cut(s) 442, 770, 979, 1143
BaeGI GKGCMC 2 cut(s) 744, 783
BamHI GGATCC 2 cut(s) 386, 698
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 4 cut(s) 195, 640, 744, 783
Bbv12I GWGCWC 2 cut(s) 195, 933
BbvI GCAGC 4 cut(s) 195, 612, 699, 1089
BceAI ACGGC 5 cut(s) 218, 263, 605, 814, 1052
BcgI CGANNNNNNTGC 2 cut(s) 980, 1014
BciT130I CCWGG 4 cut(s) 152, 440, 809, 1309
BcoDI GTCTC 1 cut(s) 1158
BfmI CTRYAG 2 cut(s) 215, 483
BfoI RGCGCY 3 cut(s) 32, 209, 313
BfuAI ACCTGC 1 cut(s) 71
BglII AGATCT 1 cut(s) 487
BisI GCNGC 7 cut(s) 117, 209, 241, 598, 601, 713, 1103
BlpI GCTNAGC 1 cut(s) 986
BlsI GCNGC 7 cut(s) 118, 210, 242, 599, 602, 714, 1104
Bme18I GGWCC 4 cut(s) 442, 770, 979, 1143
BmeT110I CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
BmsI GCATC 2 cut(s) 32, 1338
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 986
BpuEI CTTGAG 1 cut(s) 1113
BsaHI GRCGYC 3 cut(s) 119, 276, 595
BsaJI CCNNGG 9 cut(s) 16, 111, 326, 378, 438, 495, 737, 807, 1313
BsaWI WCCGGW 3 cut(s) 470, 628, 706
BsaXI ACNNNNNCTCC 8 cut(s) 128, 158, 398, 428, 1043, 1073, 1253, 1283
Bse118I RCCGGY 2 cut(s) 663, 706
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 4 cut(s) 152, 440, 809, 1309
BseDI CCNNGG 9 cut(s) 16, 111, 326, 378, 438, 495, 737, 807, 1313
BseGI GGATG 6 cut(s) 12, 505, 537, 822, 1210, 1353
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 4 cut(s) 101, 143, 1000, 1038
BseRI GAGGAG 6 cut(s) 32, 35, 88, 344, 347, 1064
BseSI GKGCMC 2 cut(s) 744, 783
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 4 cut(s) 195, 612, 699, 1089
BseYI CCCAGC 1 cut(s) 783
BsgI GTGCAG 1 cut(s) 1241
Bsh1236I CGCG 2 cut(s) 288, 728
Bsh1285I CGRYCG 2 cut(s) 241, 286
BshFI GGCC 9 cut(s) 158, 188, 233, 240, 400, 742, 781, 801, 1312
BshNI GGYRCC 1 cut(s) 763
BshTI ACCGGT 1 cut(s) 706
BsiEI CGRYCG 2 cut(s) 241, 286
BsiHKAI GWGCWC 2 cut(s) 195, 933
BsiHKCI CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
BsmAI GTCTC 1 cut(s) 1158
BsmBI CGTCTC 1 cut(s) 1158
BsnI GGCC 9 cut(s) 158, 188, 233, 240, 400, 742, 781, 801, 1312
BsoBI CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
Bsp120I GGGCCC 2 cut(s) 740, 779
Bsp1286I GDGCHC 5 cut(s) 195, 640, 744, 783, 933
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
Bsp1720I GCTNAGC 1 cut(s) 986
BspANI GGCC 9 cut(s) 158, 188, 233, 240, 400, 742, 781, 801, 1312
BspCNI CTCAG 4 cut(s) 100, 142, 999, 1039
BspFNI CGCG 2 cut(s) 288, 728
BspMAI CTGCAG 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 4 cut(s) 381, 394, 693, 706
BspT107I GGYRCC 1 cut(s) 763
BsrBI CCGCTC 3 cut(s) 128, 570, 609
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 663, 706
BsrGI TGTACA 1 cut(s) 1059
BssAI RCCGGY 2 cut(s) 663, 706
BssECI CCNNGG 9 cut(s) 16, 111, 326, 378, 438, 495, 737, 807, 1313
BssMI GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
BssNI GRCGYC 3 cut(s) 119, 276, 595
BssT1I CCWWGG 1 cut(s) 1313
Bst2UI CCWGG 4 cut(s) 152, 440, 809, 1309
Bst4CI ACNGT 3 cut(s) 937, 1285, 1360
Bst6I CTCTTC 4 cut(s) 53, 222, 365, 1248
BstACI GRCGYC 3 cut(s) 119, 276, 595
BstAUI TGTACA 1 cut(s) 1059
BstC8I GCNNGC 4 cut(s) 186, 779, 992, 1293
BstDEI CTNAG 6 cut(s) 87, 129, 986, 1047, 1296, 1352
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 6 cut(s) 12, 505, 537, 822, 1210, 1353
BstFNI CGCG 2 cut(s) 288, 728
BstH2I RGCGCY 3 cut(s) 32, 209, 313
BstHHI GCGC 5 cut(s) 23, 31, 208, 312, 1003
BstKTI GATC 6 cut(s) 135, 389, 490, 701, 1014, 1302
BstMAI GTCTC 1 cut(s) 1158
BstMBI GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
BstMCI CGRYCG 2 cut(s) 241, 286
BstNI CCWGG 4 cut(s) 152, 440, 809, 1309
BstNSI RCATGY 1 cut(s) 1344
BstSFI CTRYAG 2 cut(s) 215, 483
BstSLI GKGCMC 2 cut(s) 744, 783
BstUI CGCG 2 cut(s) 288, 728
BstV1I GCAGC 4 cut(s) 195, 612, 699, 1089
BstX2I RGATCY 3 cut(s) 386, 487, 698
BstYI RGATCY 3 cut(s) 386, 487, 698
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 9 cut(s) 158, 188, 233, 240, 400, 742, 781, 801, 1312
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 6 cut(s) 12, 505, 537, 822, 1210, 1353
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 933
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 186, 779, 992, 1293
CfoI GCGC 5 cut(s) 23, 31, 208, 312, 1003
Cfr10I RCCGGY 2 cut(s) 663, 706
Cfr9I CCCGGG 4 cut(s) 326, 378, 495, 737
CseI GACGC 5 cut(s) 108, 284, 439, 603, 734
Csp6I GTAC 3 cut(s) 1018, 1060, 1356
CspAI ACCGGT 1 cut(s) 706
CviAII CATG 2 cut(s) 1015, 1341
CviQI GTAC 3 cut(s) 1018, 1060, 1356
DdeI CTNAG 6 cut(s) 87, 129, 986, 1047, 1296, 1352
DpnI GATC 6 cut(s) 134, 388, 489, 700, 1013, 1301
DpnII GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
EaeI YGGCCR 3 cut(s) 186, 238, 799
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 4 cut(s) 53, 222, 365, 1248
EarI CTCTTC 4 cut(s) 53, 222, 365, 1248
EciI GGCGGA 3 cut(s) 406, 878, 1265
Ecl136II GAGCTC 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 1313
Eco24I GRGCYC 4 cut(s) 195, 640, 744, 783
Eco47I GGWCC 4 cut(s) 442, 770, 979, 1143
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 193
Eco88I CYCGRG 5 cut(s) 326, 378, 495, 737, 1034
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 741, 780
EcoRI GAATTC 1 cut(s) 1369
EcoRII CCWGG 4 cut(s) 150, 438, 807, 1307
EcoT14I CCWWGG 1 cut(s) 1313
EcoT38I GRGCYC 4 cut(s) 195, 640, 744, 783
ErhI CCWWGG 1 cut(s) 1313
Esp3I CGTCTC 1 cut(s) 1158
FaeI CATG 2 cut(s) 1018, 1344
FaiI YATR 8 cut(s) 927, 962, 1016, 1058, 1095, 1177, 1200, 1342
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 2 cut(s) 1014, 1340
FauI CCCGC 6 cut(s) 382, 575, 685, 690, 770, 1300
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 7 cut(s) 117, 209, 241, 598, 601, 713, 1103
FokI GGATG 5 cut(s) 492, 524, 809, 1217, 1360
FriOI GRGCYC 4 cut(s) 195, 640, 744, 783
Fsp4HI GCNGC 7 cut(s) 117, 209, 241, 598, 601, 713, 1103
GlaI GCGC 5 cut(s) 22, 30, 207, 311, 1002
GluI GCNGC 7 cut(s) 117, 209, 241, 598, 601, 713, 1103
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 3 cut(s) 32, 209, 313
HaeIII GGCC 9 cut(s) 158, 188, 233, 240, 400, 742, 781, 801, 1312
HgaI GACGC 5 cut(s) 108, 284, 439, 603, 734
HhaI GCGC 5 cut(s) 23, 31, 208, 312, 1003
Hin1I GRCGYC 3 cut(s) 119, 276, 595
Hin1II CATG 2 cut(s) 1018, 1344
Hin6I GCGC 5 cut(s) 21, 29, 206, 310, 1001
HinP1I GCGC 5 cut(s) 21, 29, 206, 310, 1001
HincII GTYRAC 2 cut(s) 283, 649
HindII GTYRAC 2 cut(s) 283, 649
HinfI GANTC 6 cut(s) 167, 220, 512, 534, 1030, 1262
HphI GGTGA 8 cut(s) 25, 244, 485, 607, 696, 823, 1099, 1372
Hpy166II GTNNAC 4 cut(s) 123, 283, 649, 1380
Hpy188III TCNNGA 9 cut(s) 164, 199, 224, 346, 509, 550, 1034, 1081, 1130
Hpy8I GTNNAC 4 cut(s) 123, 283, 649, 1380
HpyAV CCTTC 4 cut(s) 170, 196, 808, 1078
HpyCH4III ACNGT 3 cut(s) 937, 1285, 1360
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 217, 838, 1222
HpyF3I CTNAG 6 cut(s) 87, 129, 986, 1047, 1296, 1352
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 3 cut(s) 119, 276, 595
Hsp92II CATG 2 cut(s) 1018, 1344
HspAI GCGC 5 cut(s) 21, 29, 206, 310, 1001
Kzo9I GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
Lsp1109I GCAGC 4 cut(s) 195, 612, 699, 1089
LweI GCATC 2 cut(s) 32, 1338
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 517, 848
MalI GATC 6 cut(s) 134, 388, 489, 700, 1013, 1301
MbiI CCGCTC 3 cut(s) 128, 570, 609
MboI GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
MboII GAAGA 6 cut(s) 40, 43, 239, 250, 352, 1265
MflI RGATCY 3 cut(s) 386, 487, 698
MhlI GDGCHC 5 cut(s) 195, 640, 744, 783, 933
MluCI AATT 3 cut(s) 877, 1325, 1369
MluI ACGCGT 1 cut(s) 726
MlyI GAGTC 5 cut(s) 161, 214, 506, 543, 1271
MmeI TCCRAC 6 cut(s) 165, 364, 414, 1190, 1325, 1342
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 2 cut(s) 881, 1149
MvaI CCWGG 4 cut(s) 152, 440, 809, 1309
MvnI CGCG 2 cut(s) 288, 728
NdeII GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
NlaIII CATG 2 cut(s) 1018, 1344
NmeAIII GCCGAG 2 cut(s) 92, 214
NmuCI GTSAC 1 cut(s) 517
NspI RCATGY 1 cut(s) 1344
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 279, 390
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 1 cut(s) 1030
PflFI GACNNNGTC 2 cut(s) 278, 533
PinAI ACCGGT 1 cut(s) 706
PkrI GCNGC 7 cut(s) 118, 210, 242, 599, 602, 714, 1104
PleI GAGTC 5 cut(s) 161, 214, 506, 542, 1270
PpsI GAGTC 5 cut(s) 161, 214, 506, 542, 1270
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 4 cut(s) 150, 438, 807, 1307
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 4 cut(s) 150, 438, 807, 1307
PspOMI GGGCCC 2 cut(s) 740, 779
PstI CTGCAG 1 cut(s) 219
PsuI RGATCY 3 cut(s) 386, 487, 698
PsyI GACNNNGTC 2 cut(s) 278, 533
RsaI GTAC 3 cut(s) 1019, 1061, 1357
RsaNI GTAC 3 cut(s) 1018, 1060, 1356
SacI GAGCTC 1 cut(s) 195
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 881, 1149
SatI GCNGC 7 cut(s) 117, 209, 241, 598, 601, 713, 1103
Sau3AI GATC 6 cut(s) 132, 386, 487, 698, 1011, 1299
SchI GAGTC 5 cut(s) 161, 214, 506, 543, 1271
SduI GDGCHC 5 cut(s) 195, 640, 744, 783, 933
SfaNI GCATC 2 cut(s) 32, 1338
SfcI CTRYAG 2 cut(s) 215, 483
SgrAI CRCCGGYG 1 cut(s) 706
SinI GGWCC 4 cut(s) 442, 770, 979, 1143
SmaI CCCGGG 4 cut(s) 328, 380, 497, 739
SmlI CTYRAG 1 cut(s) 1128
SmoI CTYRAG 1 cut(s) 1128
Sse9I AATT 3 cut(s) 877, 1325, 1369
SstI GAGCTC 1 cut(s) 195
StyI CCWWGG 1 cut(s) 1313
TaaI ACNGT 3 cut(s) 937, 1285, 1360
TaiI ACGT 1 cut(s) 369
TaqI TCGA 8 cut(s) 165, 198, 225, 282, 294, 321, 549, 1185
TasI AATT 3 cut(s) 877, 1325, 1369
TatI WGTACW 2 cut(s) 1017, 1059
TauI GCSGC 3 cut(s) 119, 243, 600
TfiI GAWTC 1 cut(s) 1030
Tru1I TTAA 2 cut(s) 881, 1149
Tru9I TTAA 2 cut(s) 881, 1149
TscAI CASTG 2 cut(s) 415, 940
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 4 cut(s) 208, 600, 712, 1102
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 494, 811, 1110
TspMI CCCGGG 4 cut(s) 326, 378, 495, 737
TspRI CASTG 2 cut(s) 415, 940
Tth111I GACNNNGTC 2 cut(s) 278, 533
VpaK11BI GGWCC 4 cut(s) 442, 770, 979, 1143
XapI RAATTY 2 cut(s) 877, 1369
XceI RCATGY 1 cut(s) 1344
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 1120
XmaI CCCGGG 4 cut(s) 326, 378, 495, 737
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.