Rh5BG333800

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
46523087 .. 46527254
4168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG333800.1

Sequence Viewer

Length: 1368 bp
ATGGATTTACGCATCCGCGGCGCATCGGCGCTCGCCTTTCTCCTCCTCTTCTTCGCCGGAACCTGCTTCGCATTGCCGGAATATCCTCAGAAGCCCTCCTCCTCGGCGGCGTCCACCGCTCAGATCAACTCCAACTCCGTCCTGGTGGCCCTGCTCGACTCGCATTACTCCGAGCTGGCTGAGCTCGTCGAGAAGGCCCTGCTCCTGCAGACTCTCGAAGAGGCCGTCGGCCGCCACAACATCACCATCTTCGCTCCCCGAAACGACGCCGTCGACCGCGACCTCGACCCCGACTTCAAGCGCTACTTGCTCGAACCCGGGAACCTCAAATCGCTCCAGAAGCTCCTCCTCTTCCACGTTATCCCCGCCCGGGTCGGATCCGACGAATGGCCCACCCACACTGCCTCCGCCCGACACCAGACGCTCTCCCAGGACCATCTCCACTTGTCCAGCCTCGCTTCCGGTGAGAAGGCCGTAGATCTCGCCCGGGTCATTCATCCCGACTCCGTGACCCGACCCGACGGAGTCATCCACGCCATCGAGAGGCTTCTTATCCCCCGCTCCGTAGAGGACCACTTCAACCGACGCCGCAGCCTCCGCTCCATCACCGCCGTCAAGCCGGAGGGAGCTCCCGAAGTTGACCCCAGAACCAACCGGCTGAAAAAACCCGCCCCGCCTACCAAACCCGGATCCTCACCCGTCCTGCCCATCTACGACGCGTTGGCTCCCGGACCCTCGTTGGCTCCGGCTCCGGCACCGGGACCCGGCGGGCCCCACCACCACTTCAACGGCCACGCCCAGGTGAAGGACTTCATCCAAACACTCTTGCACTACGGGGGTTACAACGAGATGGCGGACATTTTGGTAAATTTAACTTCTCTGGCTACGGAGATGGGTCGGTTAGTGTCGGAGGGTTATGTGCTCACTGTTTTGGCTCCGAACGACGAGGCTATGGCGAAGCTGACGACGGACCAGCTCAGCGAGCCGGGTGCGCCGGAGCAGATCATGTACTACCATTTGATTCCCGAGTATCAGACTGAGGAGAGTATGTACAATGCCGTTAGGAGGTTCGGGAAGGTGAGCTATGAAACGCTGCGGTTGCCCAACAAGGTTGTGGCTCAAGAGGCTGATGGGTCCGTTAAGTTCGGGCAGGGAGACGGGTCGGCGTACTTGTTCGACCCGGATATTTATACGGATGGTCGGATTTCCGTGCAGGGGATTGATGGGGTTTTGTTCCCGGCGGAAGAGGTGGAGTCCAAGTCCGAAACCAAAACGGTTCAACCCGCTAAGATTGTTACCAGGCCCAGGAGAGGTATGTGTTTCATTTCTGTTTTTAATTTTTTAATTTTTTTTTTCCTTCGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.09

Weight (kDa)

6.07

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 55 - 186 6e-20 Fasciclin domain
Fasciclin PF02469 303 - 413 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 3 cut(s) 119, 561, 600
AccI GTMKAC 1 cut(s) 273
AccII CGCG 3 cut(s) 18, 279, 719
AclWI GGATC 4 cut(s) 372, 385, 684, 697
AcoI YGGCCR 2 cut(s) 229, 790
AcsI RAATTY 1 cut(s) 868
AcyI GRCGYC 3 cut(s) 110, 267, 586
AfaI GTAC 3 cut(s) 1010, 1052, 1169
AfeI AGCGCT 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 4 cut(s) 298, 580, 787, 1280
AjnI CCWGG 5 cut(s) 141, 429, 798, 1298, 1304
AluBI AGCT 7 cut(s) 175, 184, 343, 629, 961, 976, 1083
AluI AGCT 7 cut(s) 175, 184, 343, 629, 961, 976, 1083
Alw21I GWGCWC 3 cut(s) 186, 631, 924
Alw26I GTCTC 1 cut(s) 1149
AlwI GGATC 4 cut(s) 372, 385, 684, 697
Ama87I CYCGRG 4 cut(s) 317, 369, 486, 1025
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 9 cut(s) 147, 195, 222, 229, 389, 471, 770, 790, 1301
ApaI GGGCCC 1 cut(s) 774
ApeKI GCWGC 2 cut(s) 591, 1093
ApoI RAATTY 1 cut(s) 868
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 809
AspLEI GCGC 4 cut(s) 23, 31, 303, 994
AsuHPI GGTGA 6 cut(s) 235, 476, 598, 687, 814, 1090
AvaI CYCGRG 4 cut(s) 317, 369, 486, 1025
AvaII GGWCC 6 cut(s) 433, 571, 731, 761, 970, 1134
BaeGI GKGCMC 1 cut(s) 774
BamHI GGATCC 2 cut(s) 377, 689
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 3 cut(s) 186, 631, 774
Bbv12I GWGCWC 3 cut(s) 186, 631, 924
BbvI GCAGC 2 cut(s) 603, 1080
BceAI ACGGC 6 cut(s) 209, 254, 458, 596, 805, 1043
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 5 cut(s) 143, 431, 800, 1300, 1306
BcoDI GTCTC 1 cut(s) 1149
BfmI CTRYAG 1 cut(s) 206
BfoI RGCGCY 2 cut(s) 32, 304
BfuAI ACCTGC 1 cut(s) 71
BglII AGATCT 1 cut(s) 478
BisI GCNGC 6 cut(s) 19, 108, 232, 589, 592, 1094
BlpI GCTNAGC 2 cut(s) 180, 977
BlsI GCNGC 6 cut(s) 20, 109, 233, 590, 593, 1095
Bme18I GGWCC 6 cut(s) 433, 571, 731, 761, 970, 1134
BmeT110I CYCGRG 4 cut(s) 317, 369, 486, 1025
BmsI GCATC 2 cut(s) 21, 32
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 2 cut(s) 180, 977
BpuEI CTTGAG 1 cut(s) 1104
BsaHI GRCGYC 3 cut(s) 110, 267, 586
BsaJI CCNNGG 8 cut(s) 16, 102, 317, 369, 429, 486, 798, 1304
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 8 cut(s) 119, 149, 389, 419, 1034, 1064, 1244, 1274
Bse118I RCCGGY 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 5 cut(s) 143, 431, 800, 1300, 1306
BseDI CCNNGG 8 cut(s) 16, 102, 317, 369, 429, 486, 798, 1304
BseGI GGATG 5 cut(s) 12, 496, 528, 813, 1201
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 5 cut(s) 101, 134, 171, 991, 1029
BseRI GAGGAG 7 cut(s) 32, 35, 88, 91, 335, 338, 1055
BseSI GKGCMC 1 cut(s) 774
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 603, 1080
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 3 cut(s) 18, 279, 719
Bsh1285I CGRYCG 2 cut(s) 232, 277
BshFI GGCC 9 cut(s) 149, 197, 224, 231, 391, 473, 772, 792, 1303
BshNI GGYRCC 1 cut(s) 754
BsiEI CGRYCG 2 cut(s) 232, 277
BsiHKAI GWGCWC 3 cut(s) 186, 631, 924
BsiHKCI CYCGRG 4 cut(s) 317, 369, 486, 1025
BslFI GGGAC 1 cut(s) 774
BsmAI GTCTC 1 cut(s) 1149
BsmBI CGTCTC 1 cut(s) 1149
BsmFI GGGAC 1 cut(s) 774
BsnI GGCC 9 cut(s) 149, 197, 224, 231, 391, 473, 772, 792, 1303
BsoBI CYCGRG 4 cut(s) 317, 369, 486, 1025
Bsp120I GGGCCC 1 cut(s) 770
Bsp1286I GDGCHC 4 cut(s) 186, 631, 774, 924
Bsp1407I TGTACA 1 cut(s) 1050
Bsp143I GATC 5 cut(s) 123, 377, 478, 689, 1002
Bsp1720I GCTNAGC 2 cut(s) 180, 977
BspANI GGCC 9 cut(s) 149, 197, 224, 231, 391, 473, 772, 792, 1303
BspCNI CTCAG 5 cut(s) 100, 133, 172, 990, 1030
BspFNI CGCG 3 cut(s) 18, 279, 719
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 4 cut(s) 372, 385, 684, 697
BspT107I GGYRCC 1 cut(s) 754
BsrBI CCGCTC 3 cut(s) 119, 561, 600
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 654
BsrGI TGTACA 1 cut(s) 1050
BssAI RCCGGY 1 cut(s) 654
BssECI CCNNGG 8 cut(s) 16, 102, 317, 369, 429, 486, 798, 1304
BssMI GATC 5 cut(s) 123, 377, 478, 689, 1002
BssNI GRCGYC 3 cut(s) 110, 267, 586
Bst2UI CCWGG 5 cut(s) 143, 431, 800, 1300, 1306
Bst4CI ACNGT 2 cut(s) 928, 1276
Bst6I CTCTTC 4 cut(s) 53, 213, 356, 1239
BstACI GRCGYC 3 cut(s) 110, 267, 586
BstAUI TGTACA 1 cut(s) 1050
BstC8I GCNNGC 4 cut(s) 33, 177, 770, 983
BstDEI CTNAG 6 cut(s) 87, 120, 180, 977, 1038, 1287
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 5 cut(s) 12, 496, 528, 813, 1201
BstFNI CGCG 3 cut(s) 18, 279, 719
BstH2I RGCGCY 2 cut(s) 32, 304
BstHHI GCGC 4 cut(s) 23, 31, 303, 994
BstKTI GATC 5 cut(s) 126, 380, 481, 692, 1005
BstMAI GTCTC 1 cut(s) 1149
BstMBI GATC 5 cut(s) 123, 377, 478, 689, 1002
BstMCI CGRYCG 2 cut(s) 232, 277
BstNI CCWGG 5 cut(s) 143, 431, 800, 1300, 1306
BstSFI CTRYAG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 774
BstUI CGCG 3 cut(s) 18, 279, 719
BstV1I GCAGC 2 cut(s) 603, 1080
BstX2I RGATCY 3 cut(s) 377, 478, 689
BstYI RGATCY 3 cut(s) 377, 478, 689
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 9 cut(s) 149, 197, 224, 231, 391, 473, 772, 792, 1303
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 5 cut(s) 12, 496, 528, 813, 1201
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 399, 924
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 33, 177, 770, 983
CfoI GCGC 4 cut(s) 23, 31, 303, 994
Cfr10I RCCGGY 1 cut(s) 654
Cfr42I CCGCGG 1 cut(s) 19
Cfr9I CCCGGG 3 cut(s) 317, 369, 486
CseI GACGC 5 cut(s) 99, 275, 430, 594, 725
Csp6I GTAC 3 cut(s) 1009, 1051, 1168
CviAII CATG 1 cut(s) 1006
CviQI GTAC 3 cut(s) 1009, 1051, 1168
DdeI CTNAG 6 cut(s) 87, 120, 180, 977, 1038, 1287
DpnI GATC 5 cut(s) 125, 379, 480, 691, 1004
DpnII GATC 5 cut(s) 123, 377, 478, 689, 1002
EaeI YGGCCR 2 cut(s) 229, 790
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 4 cut(s) 53, 213, 356, 1239
EarI CTCTTC 4 cut(s) 53, 213, 356, 1239
EciI GGCGGA 3 cut(s) 397, 869, 1256
Ecl136II GAGCTC 2 cut(s) 184, 629
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 3 cut(s) 186, 631, 774
Eco47I GGWCC 6 cut(s) 433, 571, 731, 761, 970, 1134
Eco47III AGCGCT 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 2 cut(s) 184, 629
Eco88I CYCGRG 4 cut(s) 317, 369, 486, 1025
EcoICRI GAGCTC 2 cut(s) 184, 629
EcoO109I RGGNCCY 3 cut(s) 196, 761, 771
EcoRII CCWGG 5 cut(s) 141, 429, 798, 1298, 1304
EcoT38I GRGCYC 3 cut(s) 186, 631, 774
Esp3I CGTCTC 1 cut(s) 1149
FaeI CATG 1 cut(s) 1009
FaiI YATR 7 cut(s) 918, 953, 1007, 1049, 1086, 1191, 1316
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 774
FatI CATG 1 cut(s) 1005
FauI CCCGC 6 cut(s) 373, 566, 676, 681, 761, 1291
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 19, 108, 232, 589, 592, 1094
FokI GGATG 4 cut(s) 483, 515, 800, 1208
FriOI GRGCYC 3 cut(s) 186, 631, 774
Fsp4HI GCNGC 6 cut(s) 19, 108, 232, 589, 592, 1094
GlaI GCGC 4 cut(s) 22, 30, 302, 993
GluI GCNGC 6 cut(s) 19, 108, 232, 589, 592, 1094
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 2 cut(s) 32, 304
HaeIII GGCC 9 cut(s) 149, 197, 224, 231, 391, 473, 772, 792, 1303
HgaI GACGC 5 cut(s) 99, 275, 430, 594, 725
HhaI GCGC 4 cut(s) 23, 31, 303, 994
Hin1I GRCGYC 3 cut(s) 110, 267, 586
Hin1II CATG 1 cut(s) 1009
Hin6I GCGC 4 cut(s) 21, 29, 301, 992
HinP1I GCGC 4 cut(s) 21, 29, 301, 992
HincII GTYRAC 2 cut(s) 274, 640
HindII GTYRAC 2 cut(s) 274, 640
HinfI GANTC 6 cut(s) 158, 211, 503, 525, 1021, 1253
HphI GGTGA 6 cut(s) 235, 476, 598, 687, 814, 1090
Hpy166II GTNNAC 3 cut(s) 114, 274, 640
Hpy188III TCNNGA 9 cut(s) 190, 215, 337, 500, 541, 632, 1025, 1072, 1121
Hpy8I GTNNAC 3 cut(s) 114, 274, 640
HpyAV CCTTC 5 cut(s) 187, 463, 799, 1069, 1367
HpyCH4III ACNGT 2 cut(s) 928, 1276
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 208, 829, 1213
HpyF3I CTNAG 6 cut(s) 87, 120, 180, 977, 1038, 1287
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 3 cut(s) 110, 267, 586
Hsp92II CATG 1 cut(s) 1009
HspAI GCGC 4 cut(s) 21, 29, 301, 992
KflI GGGWCCC 1 cut(s) 761
KspI CCGCGG 1 cut(s) 19
Kzo9I GATC 5 cut(s) 123, 377, 478, 689, 1002
Lsp1109I GCAGC 2 cut(s) 603, 1080
LweI GCATC 2 cut(s) 21, 32
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 508, 839, 1294
MalI GATC 5 cut(s) 125, 379, 480, 691, 1004
MbiI CCGCTC 3 cut(s) 119, 561, 600
MboI GATC 5 cut(s) 123, 377, 478, 689, 1002
MboII GAAGA 6 cut(s) 40, 43, 230, 241, 343, 1256
MflI RGATCY 3 cut(s) 377, 478, 689
MhlI GDGCHC 4 cut(s) 186, 631, 774, 924
MluCI AATT 3 cut(s) 868, 1336, 1344
MluI ACGCGT 1 cut(s) 717
MlyI GAGTC 5 cut(s) 152, 205, 497, 534, 1262
MmeI TCCRAC 5 cut(s) 156, 355, 405, 888, 1181
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 4 cut(s) 872, 1140, 1335, 1343
MspA1I CMGCKG 1 cut(s) 18
MvaI CCWGG 5 cut(s) 143, 431, 800, 1300, 1306
MvnI CGCG 3 cut(s) 18, 279, 719
NdeII GATC 5 cut(s) 123, 377, 478, 689, 1002
NlaIII CATG 1 cut(s) 1009
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 270, 381
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 1 cut(s) 1021
PflFI GACNNNGTC 2 cut(s) 269, 524
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 6 cut(s) 20, 109, 233, 590, 593, 1095
PleI GAGTC 5 cut(s) 152, 205, 497, 533, 1261
PpsI GAGTC 5 cut(s) 152, 205, 497, 533, 1261
PpuMI RGGWCCY 1 cut(s) 761
Psp124BI GAGCTC 2 cut(s) 186, 631
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 5 cut(s) 141, 429, 798, 1298, 1304
PspGI CCWGG 5 cut(s) 141, 429, 798, 1298, 1304
PspOMI GGGCCC 1 cut(s) 770
PspPPI RGGWCCY 1 cut(s) 761
PstI CTGCAG 1 cut(s) 210
PsuI RGATCY 3 cut(s) 377, 478, 689
PsyI GACNNNGTC 2 cut(s) 269, 524
RsaI GTAC 3 cut(s) 1010, 1052, 1169
RsaNI GTAC 3 cut(s) 1009, 1051, 1168
SacI GAGCTC 2 cut(s) 186, 631
SacII CCGCGG 1 cut(s) 19
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 4 cut(s) 872, 1140, 1335, 1343
SatI GCNGC 6 cut(s) 19, 108, 232, 589, 592, 1094
Sau3AI GATC 5 cut(s) 123, 377, 478, 689, 1002
SchI GAGTC 5 cut(s) 152, 205, 497, 534, 1262
SduI GDGCHC 4 cut(s) 186, 631, 774, 924
SfaNI GCATC 2 cut(s) 21, 32
SfcI CTRYAG 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 19
SgrBI CCGCGG 1 cut(s) 19
SinI GGWCC 6 cut(s) 433, 571, 731, 761, 970, 1134
SmaI CCCGGG 3 cut(s) 319, 371, 488
SmlI CTYRAG 1 cut(s) 1119
SmoI CTYRAG 1 cut(s) 1119
Sse9I AATT 3 cut(s) 868, 1336, 1344
SstI GAGCTC 2 cut(s) 186, 631
TaaI ACNGT 2 cut(s) 928, 1276
TaiI ACGT 1 cut(s) 360
TaqI TCGA 8 cut(s) 156, 189, 216, 273, 285, 312, 540, 1176
TasI AATT 3 cut(s) 868, 1336, 1344
TatI WGTACW 2 cut(s) 1008, 1050
TauI GCSGC 4 cut(s) 21, 110, 234, 591
TfiI GAWTC 1 cut(s) 1021
Tru1I TTAA 4 cut(s) 872, 1140, 1335, 1343
Tru9I TTAA 4 cut(s) 872, 1140, 1335, 1343
TscAI CASTG 2 cut(s) 406, 931
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 2 cut(s) 591, 1093
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 485, 802, 1101, 1312
TspGWI ACGGA 9 cut(s) 127, 496, 537, 553, 902, 983, 1126, 1198, 1208
TspMI CCCGGG 3 cut(s) 317, 369, 486
TspRI CASTG 2 cut(s) 406, 931
Tth111I GACNNNGTC 2 cut(s) 269, 524
VpaK11BI GGWCC 6 cut(s) 433, 571, 731, 761, 970, 1134
XapI RAATTY 1 cut(s) 868
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 1111
XmaI CCCGGG 3 cut(s) 317, 369, 486
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.