Rmu_sc0006880.1_g000001

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006880.1
Physical Location & Seq
Reverse (-)
1 .. 1905
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006880.1_g000001.1.cds

Sequence Viewer

Length: 1636 bp
atggatttacgcatccgtggcgcatcggcgctcgcctttctcctcctcttcttcgccggaacctgcttcgcattgccggaatatcctcacaagccctcctcctcgtcctcctcggcggcgtccaccgctcagatcaactccaactccgtcctggtggcccttctcgactcgcattactccgagctggccgagctcgtcgagaaggccctgctcctgcagactctcgaagaggccgtcggccgccacaacatcaccatcttcgctccccgaaacgacgccgtcgaccgcgacctcgaccccgacttcaagcgctacttgctcgaacccgggaacctcaaatcgctccagaagctcgtcctcttccacgttatccccgcccgggtcggatccgacgaatggcccacccacactgcctccgcccgacaccagacgctctccctggaccatctccacttgtccagcctcgcttccggtgagagggctgtagatctcgcccgggtcattcatcccgactccgtgacccgacccgacggagtcatccacgccatcgagaggcttcttaacatcaccatcttcgctccccgaaacgacgccgtcgaccgcgacctcgaccccgacttcaagcgctacttgctcgaacccggcaacctcaaatcgctccagaagctcctcctcttccacgttatccccgcccgggtcggatccgacgaatggcccacccgcactgcctccgcccgacaccagacgctctccctggaccatctccacttgtccagcctcgcttccggtgagaaggctgtagatctcgcccgggtcattcatcccgactccgtgacccgacccgacggagtcatccacgccatcgagaggcttcttgtcccccgctccgtagaggacgacttcaaccgacgccgcagcctccgctccatcaccgccgtcaaaccggagggagcccccgaagttgaccccagaaccaaccggctgaaaaaacccgccccgccgaccaaacccggatcctcaccggtgctgcccatctacgacgcgttggctcccggaccctcgttggctccggctccggcacccggacccggcgggccccagcaccacttcaacggccacgcccaggtgaaggacttcatccaaacactcttgcactacgggggttacaacgagatggcggacattttggtaaatttaacttctctggctacggagatgggtcggttagtatcggagggttatgtgctcactgttttggctccgaacgacgaggctatggcgaagctgacgacggaccagctcagcgagccgggtgcgccggagcagatcatgtactaccatttgattcccgagtatcagactgaggagagtatgtacaatgccgttaggaggttcgggaaggtgagctatgaaacgctgcggttgcccaacaaggttgtggctcaagaggctgatgggtccgttaagttcgggcagggagacgggtcggcgtacttgttcgacccggatatttatacggatggtcggatttccgtgcaggggattgatggggttttgttcccggcggaagaggtggagtccaagtccgaaaccaaaacggttcaacccgcgaagattgttaccaggcccaggagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

59.86

Weight (kDa)

6.03

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 1078
AccBSI CCGCTC 3 cut(s) 128, 885, 924
AccI GTMKAC 2 cut(s) 282, 597
AccII CGCG 4 cut(s) 288, 603, 1043, 1610
AclWI GGATC 6 cut(s) 381, 394, 696, 709, 1008, 1021
AcoI YGGCCR 3 cut(s) 186, 238, 1114
AcsI RAATTY 1 cut(s) 1192
AcyI GRCGYC 4 cut(s) 119, 276, 591, 910
AfaI GTAC 3 cut(s) 1334, 1376, 1493
AfeI AGCGCT 2 cut(s) 311, 626
AflIII ACRYGT 1 cut(s) 1041
AgeI ACCGGT 1 cut(s) 1021
AgsI TTSAA 5 cut(s) 307, 622, 904, 1111, 1604
AjnI CCWGG 6 cut(s) 150, 438, 753, 1122, 1622, 1628
AluBI AGCT 7 cut(s) 184, 193, 352, 667, 1285, 1300, 1407
AluI AGCT 7 cut(s) 184, 193, 352, 667, 1285, 1300, 1407
Alw21I GWGCWC 2 cut(s) 195, 1248
Alw26I GTCTC 1 cut(s) 1473
AlwI GGATC 6 cut(s) 381, 394, 696, 709, 1008, 1021
Ama87I CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
Aor51HI AGCGCT 2 cut(s) 311, 626
ApaI GGGCCC 1 cut(s) 1098
ApeKI GCWGC 3 cut(s) 915, 1027, 1417
ApoI RAATTY 1 cut(s) 1192
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AsiGI ACCGGT 1 cut(s) 1021
Asp700I GAANNNNTTC 1 cut(s) 1133
AspLEI GCGC 5 cut(s) 23, 31, 312, 627, 1318
AsuHPI GGTGA 8 cut(s) 244, 485, 559, 800, 922, 1011, 1138, 1414
AvaI CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
AvaII GGWCC 6 cut(s) 442, 757, 1055, 1085, 1294, 1458
BaeGI GKGCMC 1 cut(s) 1098
BamHI GGATCC 3 cut(s) 386, 701, 1013
BanI GGYRCC 1 cut(s) 1078
BanII GRGCYC 3 cut(s) 195, 955, 1098
Bbv12I GWGCWC 2 cut(s) 195, 1248
BbvI GCAGC 3 cut(s) 927, 1014, 1404
BceAI ACGGC 6 cut(s) 218, 263, 578, 920, 1129, 1367
BcgI CGANNNNNNTGC 2 cut(s) 1295, 1329
BciT130I CCWGG 6 cut(s) 152, 440, 755, 1124, 1624, 1630
BcoDI GTCTC 1 cut(s) 1473
BfmI CTRYAG 3 cut(s) 215, 483, 798
BfoI RGCGCY 3 cut(s) 32, 313, 628
BfuAI ACCTGC 1 cut(s) 71
BglII AGATCT 2 cut(s) 487, 802
BisI GCNGC 6 cut(s) 117, 241, 913, 916, 1028, 1418
BlpI GCTNAGC 1 cut(s) 1301
BlsI GCNGC 6 cut(s) 118, 242, 914, 917, 1029, 1419
Bme18I GGWCC 6 cut(s) 442, 757, 1055, 1085, 1294, 1458
BmeT110I CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
BmsI GCATC 2 cut(s) 21, 32
BpmI CTGGAG 2 cut(s) 329, 644
Bpu1102I GCTNAGC 1 cut(s) 1301
BpuEI CTTGAG 1 cut(s) 1428
BsaHI GRCGYC 4 cut(s) 119, 276, 591, 910
BsaWI WCCGGW 4 cut(s) 470, 785, 943, 1021
Bse118I RCCGGY 2 cut(s) 978, 1021
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 6 cut(s) 152, 440, 755, 1124, 1624, 1630
BseGI GGATG 7 cut(s) 12, 505, 537, 820, 852, 1137, 1525
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 3 cut(s) 143, 1315, 1353
BseRI GAGGAG 8 cut(s) 32, 35, 88, 91, 100, 659, 662, 1379
BseSI GKGCMC 1 cut(s) 1098
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 927, 1014, 1404
BseYI CCCAGC 1 cut(s) 1098
BsgI GTGCAG 1 cut(s) 1556
Bsh1236I CGCG 4 cut(s) 288, 603, 1043, 1610
Bsh1285I CGRYCG 3 cut(s) 241, 286, 601
BshNI GGYRCC 1 cut(s) 1078
BshTI ACCGGT 1 cut(s) 1021
BsiEI CGRYCG 3 cut(s) 241, 286, 601
BsiHKAI GWGCWC 2 cut(s) 195, 1248
BsiHKCI CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
BslFI GGGAC 1 cut(s) 863
BsmAI GTCTC 1 cut(s) 1473
BsmBI CGTCTC 1 cut(s) 1473
BsmFI GGGAC 1 cut(s) 863
BsoBI CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
Bsp120I GGGCCC 1 cut(s) 1094
Bsp1286I GDGCHC 4 cut(s) 195, 955, 1098, 1248
Bsp1407I TGTACA 1 cut(s) 1374
Bsp143I GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
Bsp1720I GCTNAGC 1 cut(s) 1301
BspCNI CTCAG 3 cut(s) 142, 1314, 1354
BspFNI CGCG 4 cut(s) 288, 603, 1043, 1610
BspMAI CTGCAG 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 6 cut(s) 381, 394, 696, 709, 1008, 1021
BspT107I GGYRCC 1 cut(s) 1078
BsrBI CCGCTC 3 cut(s) 128, 885, 924
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 978, 1021
BsrGI TGTACA 1 cut(s) 1374
BssAI RCCGGY 2 cut(s) 978, 1021
BssMI GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
BssNI GRCGYC 4 cut(s) 119, 276, 591, 910
Bst2UI CCWGG 6 cut(s) 152, 440, 755, 1124, 1624, 1630
Bst4CI ACNGT 2 cut(s) 1252, 1600
Bst6I CTCTTC 5 cut(s) 53, 222, 365, 680, 1563
BstACI GRCGYC 4 cut(s) 119, 276, 591, 910
BstAUI TGTACA 1 cut(s) 1374
BstC8I GCNNGC 4 cut(s) 33, 186, 1094, 1307
BstDEI CTNAG 3 cut(s) 129, 1301, 1362
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 7 cut(s) 12, 505, 537, 820, 852, 1137, 1525
BstFNI CGCG 4 cut(s) 288, 603, 1043, 1610
BstH2I RGCGCY 3 cut(s) 32, 313, 628
BstHHI GCGC 5 cut(s) 23, 31, 312, 627, 1318
BstKTI GATC 7 cut(s) 135, 389, 490, 704, 805, 1016, 1329
BstMAI GTCTC 1 cut(s) 1473
BstMBI GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
BstMCI CGRYCG 3 cut(s) 241, 286, 601
BstNI CCWGG 6 cut(s) 152, 440, 755, 1124, 1624, 1630
BstSFI CTRYAG 3 cut(s) 215, 483, 798
BstSLI GKGCMC 1 cut(s) 1098
BstUI CGCG 4 cut(s) 288, 603, 1043, 1610
BstV1I GCAGC 3 cut(s) 927, 1014, 1404
BstX2I RGATCY 5 cut(s) 386, 487, 701, 802, 1013
BstYI RGATCY 5 cut(s) 386, 487, 701, 802, 1013
BstZI CGGCCG 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 7 cut(s) 12, 505, 537, 820, 852, 1137, 1525
BtsI GCAGTG 2 cut(s) 408, 723
BtsIMutI CAGTG 3 cut(s) 408, 723, 1248
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 33, 186, 1094, 1307
CfoI GCGC 5 cut(s) 23, 31, 312, 627, 1318
Cfr10I RCCGGY 2 cut(s) 978, 1021
Cfr9I CCCGGG 5 cut(s) 326, 378, 495, 693, 810
CseI GACGC 7 cut(s) 108, 284, 439, 599, 754, 918, 1049
Csp6I GTAC 3 cut(s) 1333, 1375, 1492
CspAI ACCGGT 1 cut(s) 1021
CviAII CATG 1 cut(s) 1330
CviQI GTAC 3 cut(s) 1333, 1375, 1492
DdeI CTNAG 3 cut(s) 129, 1301, 1362
DpnI GATC 7 cut(s) 134, 388, 489, 703, 804, 1015, 1328
DpnII GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
EaeI YGGCCR 3 cut(s) 186, 238, 1114
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 5 cut(s) 53, 222, 365, 680, 1563
EarI CTCTTC 5 cut(s) 53, 222, 365, 680, 1563
EciI GGCGGA 4 cut(s) 406, 721, 1193, 1580
Ecl136II GAGCTC 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 3 cut(s) 195, 955, 1098
Eco47I GGWCC 6 cut(s) 442, 757, 1055, 1085, 1294, 1458
Eco47III AGCGCT 2 cut(s) 311, 626
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 193
Eco88I CYCGRG 6 cut(s) 326, 378, 495, 693, 810, 1349
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 205, 1095
EcoRII CCWGG 6 cut(s) 150, 438, 753, 1122, 1622, 1628
EcoT38I GRGCYC 3 cut(s) 195, 955, 1098
Esp3I CGTCTC 1 cut(s) 1473
FaeI CATG 1 cut(s) 1333
FaiI YATR 6 cut(s) 1242, 1277, 1331, 1373, 1410, 1515
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 614, 646
FaqI GGGAC 1 cut(s) 863
FatI CATG 1 cut(s) 1329
FauI CCCGC 8 cut(s) 382, 697, 728, 890, 1000, 1005, 1085, 1615
FblI GTMKAC 2 cut(s) 282, 597
Fnu4HI GCNGC 6 cut(s) 117, 241, 913, 916, 1028, 1418
FokI GGATG 6 cut(s) 492, 524, 807, 839, 1124, 1532
FriOI GRGCYC 3 cut(s) 195, 955, 1098
Fsp4HI GCNGC 6 cut(s) 117, 241, 913, 916, 1028, 1418
GlaI GCGC 5 cut(s) 22, 30, 311, 626, 1317
GluI GCNGC 6 cut(s) 117, 241, 913, 916, 1028, 1418
GsaI CCCAGC 1 cut(s) 1102
GsuI CTGGAG 2 cut(s) 329, 644
HaeII RGCGCY 3 cut(s) 32, 313, 628
HgaI GACGC 7 cut(s) 108, 284, 439, 599, 754, 918, 1049
HhaI GCGC 5 cut(s) 23, 31, 312, 627, 1318
Hin1I GRCGYC 4 cut(s) 119, 276, 591, 910
Hin1II CATG 1 cut(s) 1333
Hin6I GCGC 5 cut(s) 21, 29, 310, 625, 1316
HinP1I GCGC 5 cut(s) 21, 29, 310, 625, 1316
HincII GTYRAC 3 cut(s) 283, 598, 964
HindII GTYRAC 3 cut(s) 283, 598, 964
HinfI GANTC 8 cut(s) 167, 220, 512, 534, 827, 849, 1345, 1577
HphI GGTGA 8 cut(s) 244, 485, 559, 800, 922, 1011, 1138, 1414
Hpy166II GTNNAC 4 cut(s) 123, 283, 598, 964
Hpy8I GTNNAC 4 cut(s) 123, 283, 598, 964
HpyAV CCTTC 5 cut(s) 170, 196, 787, 1123, 1393
HpyCH4III ACNGT 2 cut(s) 1252, 1600
HpyCH4IV ACGT 2 cut(s) 366, 681
HpyCH4V TGCA 3 cut(s) 217, 1153, 1537
HpyF3I CTNAG 3 cut(s) 129, 1301, 1362
HpySE526I ACGT 2 cut(s) 366, 681
Hsp92I GRCGYC 4 cut(s) 119, 276, 591, 910
Hsp92II CATG 1 cut(s) 1333
HspAI GCGC 5 cut(s) 21, 29, 310, 625, 1316
Kzo9I GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
Lsp1109I GCAGC 3 cut(s) 927, 1014, 1404
LweI GCATC 2 cut(s) 21, 32
MaeII ACGT 2 cut(s) 366, 681
MaeIII GTNAC 4 cut(s) 517, 832, 1163, 1618
MalI GATC 7 cut(s) 134, 388, 489, 703, 804, 1015, 1328
MbiI CCGCTC 3 cut(s) 128, 885, 924
MboI GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
MboII GAAGA 9 cut(s) 40, 43, 239, 250, 352, 565, 667, 1580, 1624
MflI RGATCY 5 cut(s) 386, 487, 701, 802, 1013
MhlI GDGCHC 4 cut(s) 195, 955, 1098, 1248
MluCI AATT 1 cut(s) 1192
MluI ACGCGT 1 cut(s) 1041
MlyI GAGTC 7 cut(s) 161, 214, 506, 543, 821, 858, 1586
MmeI TCCRAC 6 cut(s) 165, 364, 414, 679, 729, 1505
MroXI GAANNNNTTC 1 cut(s) 1133
MseI TTAA 3 cut(s) 561, 1196, 1464
MvaI CCWGG 6 cut(s) 152, 440, 755, 1124, 1624, 1630
MvnI CGCG 4 cut(s) 288, 603, 1043, 1610
NdeII GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
NlaIII CATG 1 cut(s) 1333
NmeAIII GCCGAG 2 cut(s) 92, 214
NmuCI GTSAC 2 cut(s) 517, 832
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 279, 390, 594, 705
PdmI GAANNNNTTC 1 cut(s) 1133
PfeI GAWTC 1 cut(s) 1345
PflFI GACNNNGTC 4 cut(s) 278, 533, 593, 848
PfoI TCCNGGA 1 cut(s) 1051
PinAI ACCGGT 1 cut(s) 1021
PkrI GCNGC 6 cut(s) 118, 242, 914, 917, 1029, 1419
PleI GAGTC 7 cut(s) 161, 214, 506, 542, 821, 857, 1585
PpsI GAGTC 7 cut(s) 161, 214, 506, 542, 821, 857, 1585
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 6 cut(s) 150, 438, 753, 1122, 1622, 1628
PspFI CCCAGC 1 cut(s) 1098
PspGI CCWGG 6 cut(s) 150, 438, 753, 1122, 1622, 1628
PspOMI GGGCCC 1 cut(s) 1094
PstI CTGCAG 1 cut(s) 219
PsuI RGATCY 5 cut(s) 386, 487, 701, 802, 1013
PsyI GACNNNGTC 4 cut(s) 278, 533, 593, 848
RsaI GTAC 3 cut(s) 1334, 1376, 1493
RsaNI GTAC 3 cut(s) 1333, 1375, 1492
SacI GAGCTC 1 cut(s) 195
SalI GTCGAC 2 cut(s) 281, 596
SaqAI TTAA 3 cut(s) 561, 1196, 1464
SatI GCNGC 6 cut(s) 117, 241, 913, 916, 1028, 1418
Sau3AI GATC 7 cut(s) 132, 386, 487, 701, 802, 1013, 1326
SchI GAGTC 7 cut(s) 161, 214, 506, 543, 821, 858, 1586
SduI GDGCHC 4 cut(s) 195, 955, 1098, 1248
SfaNI GCATC 2 cut(s) 21, 32
SfcI CTRYAG 3 cut(s) 215, 483, 798
SgrAI CRCCGGYG 1 cut(s) 1021
SinI GGWCC 6 cut(s) 442, 757, 1055, 1085, 1294, 1458
SmaI CCCGGG 5 cut(s) 328, 380, 497, 695, 812
SmlI CTYRAG 1 cut(s) 1443
SmoI CTYRAG 1 cut(s) 1443
Sse9I AATT 1 cut(s) 1192
SstI GAGCTC 1 cut(s) 195
TaaI ACNGT 2 cut(s) 1252, 1600
TaiI ACGT 2 cut(s) 369, 684
TasI AATT 1 cut(s) 1192
TatI WGTACW 2 cut(s) 1332, 1374
TauI GCSGC 3 cut(s) 119, 243, 915
TfiI GAWTC 1 cut(s) 1345
Tru1I TTAA 3 cut(s) 561, 1196, 1464
Tru9I TTAA 3 cut(s) 561, 1196, 1464
TscAI CASTG 3 cut(s) 415, 730, 1255
TseFI GTSAC 2 cut(s) 517, 832
TseI GCWGC 3 cut(s) 915, 1027, 1417
Tsp45I GTSAC 2 cut(s) 517, 832
TspDTI ATGAA 4 cut(s) 494, 809, 1126, 1425
TspMI CCCGGG 5 cut(s) 326, 378, 495, 693, 810
TspRI CASTG 3 cut(s) 415, 730, 1255
Tth111I GACNNNGTC 4 cut(s) 278, 533, 593, 848
VpaK11BI GGWCC 6 cut(s) 442, 757, 1055, 1085, 1294, 1458
XapI RAATTY 1 cut(s) 1192
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 1435
XmaI CCCGGG 5 cut(s) 326, 378, 495, 693, 810
XmiI GTMKAC 2 cut(s) 282, 597
XmnI GAANNNNTTC 1 cut(s) 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.