AT3G53060

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005222
Physical Location & Seq
Forward (+)
19670166 .. 19670423
258 bp
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UTR
Exon/CDS
Intron
AT3G53060.1

Sequence Viewer

Length: 258 bp
ATGATGATAAAGGGTATGGCAGAAGACGATTGTGCCGATAATGGAATCCCTCTTCCAAACGTGACAAGCAAGATACTCTTATTGGTGATCGAGTATTGCAAGAAGCACGTCGTTGAGAGCAAAGAAGAAGATCTAAAGAAGTGGGACGCTGAATTCATGAAGAAGATGGAACAATCGATTCTCTTTGATGTTATGATGGCTGCGAATTATCTCAATATCCAAAGCCTTCTTGATCTCACATTTTCAAACTGTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000151 GO:0000226 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010605 GO:0015630 GO:0016020 GO:0016043 GO:0016567 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031324 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045910 GO:0045934 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051603 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

85

Amino Acids

9.79

Weight (kDa)

4.84

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 2 - 37 6.5e-14 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 152
AgsI TTSAA 1 cut(s) 246
AjiI CACGTC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 160, 190
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 176
BseXI GCAGC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 176
BslFI GGGAC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 87, 130, 232
BspDI ATCGAT 1 cut(s) 176
BspHI TCATGA 1 cut(s) 156
BssMI GATC 3 cut(s) 87, 130, 232
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 57
BstKTI GATC 3 cut(s) 90, 133, 235
BstMBI GATC 3 cut(s) 87, 130, 232
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 176
BsuTUI ATCGAT 1 cut(s) 176
BtrI CACGTC 1 cut(s) 109
CciI TCATGA 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 176
CseI GACGC 1 cut(s) 155
CviAII CATG 1 cut(s) 157
CviJI RGCY 2 cut(s) 200, 225
CviKI_1 RGCY 2 cut(s) 200, 225
DpnI GATC 3 cut(s) 89, 132, 234
DpnII GATC 3 cut(s) 87, 130, 232
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 152
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 17, 158, 194
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HgaI GACGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 160
HinfI GANTC 2 cut(s) 45, 178
HphI GGTGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 157, 230
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 60, 108
HpyCH4V TGCA 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 60, 108
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 3 cut(s) 87, 130, 232
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 2 cut(s) 60, 108
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 89, 132, 234
MboI GATC 3 cut(s) 87, 130, 232
MboII GAAGA 6 cut(s) 35, 44, 137, 140, 172, 175
MflI RGATCY 1 cut(s) 130
MluCI AATT 2 cut(s) 152, 205
MnlI CCTC 1 cut(s) 60
NdeII GATC 3 cut(s) 87, 130, 232
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 2 cut(s) 45, 178
PkrI GCNGC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 130
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 87, 130, 232
SetI ASST 2 cut(s) 63, 111
SgeI CNNG 8 cut(s) 73, 78, 82, 103, 112, 119, 169, 242
Sse9I AATT 2 cut(s) 152, 205
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 63, 111
TaqI TCGA 2 cut(s) 90, 176
TasI AATT 2 cut(s) 152, 205
TfiI GAWTC 2 cut(s) 45, 178
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 145, 173
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.