Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Forward (+)

17359450 .. 17361011

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G172700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCGTCGTCGAAGAAGATCACCCTGAAGAGCTCTGATGGCGAATCGTTCGAGGTTGAAGAAGCGGTGGCTCTTGAGTCGCAGACCATCAAGCATATGATCGAGGACGATTGCGCCGACAACGGCATTCCTCTGCCCAACGTGACGAGCAAGATCTTGGCCAAGGTCATCGAGTACTGCAAGAAGCACGTCGACGCTGCCAAGCCTGATGAGAAGATCTCCGAGGATGATCTCAAGGCTTGGGATCAGGACTTTGTCAAAGTTGACCAGGCAACCCTATTTGATCTCATTCTGGCTGCAAACTACTTGAACATCAAGCTCCTGCTGGACCTGACATGCCAGACTGTTGCGGACATGATCAAGGGGAAGACCCCGGAGGAGATCCGAAAGACCTTCAATATCAAGAACGACTTCACCCCGGAGGAGGAGGAGGAAGTTCGTCGCGAGAACCAGTGGGCATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

4.62

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	68, 353
AclWI	GGATC	2 cut(s)	255, 379
AcoI	YGGCCR	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	62, 313, 400, 467
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	36, 322
AluI	AGCT	2 cut(s)	36, 322
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	255, 379
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	200, 299
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	377, 422
AsuHPI	GGTGA	2 cut(s)	16, 409
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	187, 286
BccI	CCATC	2 cut(s)	35, 98
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	377, 422
BglII	AGATCT	2 cut(s)	156, 219
BisI	GCNGC	2 cut(s)	201, 300
BlsI	GCNGC	2 cut(s)	202, 301
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	272, 377, 422
Bme18I	GGWCC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	3 cut(s)	272, 377, 422
BpiI	GAAGAC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuEI	CTTGAG	2 cut(s)	98, 221
BpuMI	CCSGG	2 cut(s)	377, 422
BsaJI	CCNNGG	4 cut(s)	165, 225, 375, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	165, 225, 375, 420
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	4 cut(s)	395, 440, 443, 446
BseXI	GCAGC	2 cut(s)	187, 286
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	377, 422
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
Bsp68I	TCGCGA	1 cut(s)	447
BspACI	CCGC	2 cut(s)	68, 353
BspANI	GGCC	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	447
BspPI	GGATC	2 cut(s)	255, 379
BspQI	GCTCTTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	4 cut(s)	165, 225, 375, 420
BssMI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	9 cut(s)	24, 105, 159, 222, 235, 250, 289, 363, 387
BstMBI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	3 cut(s)	270, 375, 420
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	187, 286
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	3 cut(s)	156, 219, 384
BstYI	RGATCY	3 cut(s)	156, 219, 384
BsuRI	GGCC	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	461
BtuMI	TCGCGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	339, 358
CviJI	RGCY	7 cut(s)	36, 74, 164, 208, 242, 299, 322
CviKI_1	RGCY	7 cut(s)	36, 74, 164, 208, 242, 299, 322
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	9 cut(s)	23, 104, 158, 221, 234, 249, 288, 362, 386
DpnII	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	342, 361
FaiI	YATR	4 cut(s)	99, 101, 340, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	2 cut(s)	338, 357
FauNDI	CATATG	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	201, 300
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	201, 300
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	201, 300
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	377, 422
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	342, 361
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	196, 268
HindII	GTYRAC	2 cut(s)	196, 268
HinfI	GANTC	2 cut(s)	47, 80
HpaII	CCGG	2 cut(s)	377, 422
HphI	GGTGA	2 cut(s)	16, 409
Hpy166II	GTNNAC	2 cut(s)	196, 268
Hpy188I	TCNGA	3 cut(s)	40, 226, 389
Hpy188III	TCNNGA	4 cut(s)	77, 251, 406, 446
Hpy8I	GTNNAC	2 cut(s)	196, 268
Hpy99I	CGWCG	6 cut(s)	10, 13, 16, 197, 200, 447
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	144, 192
HpyCH4V	TGCA	2 cut(s)	183, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	144, 192
Hsp92II	CATG	2 cut(s)	342, 361
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	2 cut(s)	187, 286
MaeII	ACGT	2 cut(s)	144, 192
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	9 cut(s)	23, 104, 158, 221, 234, 249, 288, 362, 386
MboI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
MboII	GAAGA	6 cut(s)	28, 31, 43, 74, 229, 382
MflI	RGATCY	3 cut(s)	156, 219, 384
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	9 cut(s)	49, 100, 144, 220, 373, 418, 421, 424, 427
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	466
Msp20I	TGGCCA	1 cut(s)	164
MspI	CCGG	2 cut(s)	377, 422
MspR9I	CCNGG	3 cut(s)	272, 377, 422
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	377, 422
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
NlaIII	CATG	2 cut(s)	342, 361
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	447
NspI	RCATGY	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 117
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	202, 301
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	3 cut(s)	156, 219, 384
PsyI	GACNNNGTC	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	2 cut(s)	201, 300
Sau3AI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	272, 377, 422
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 60, 147, 171, 195, 324, 336, 398
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	77, 236
SmoI	CTYRAG	2 cut(s)	77, 236
SsiI	CCGC	2 cut(s)	68, 353
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	270, 375, 420
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	147, 195
TaqI	TCGA	5 cut(s)	14, 54, 105, 174, 195
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	200, 299
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.