Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

6811909 .. 6813077

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCGTCGTCGAAGAAGATCACCCTGAAGAGCTCCGACGGCGAGTCGTTCGAGGTCGAGGAGGCGGTGGCGCTGGAGTCACAGACCATTAAGCACATGATCGAGGACGACTGCGCCGACAACGGTATTCCTTTGCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGCAAGAGGCATGTCGACGCCGCCAAGCCCGACGAGAAGATCTCCGAGGACGATCTCAAGGCCTGGGATCAGGAGTTCGTAAAGGTGGACCAGGCTACGCTGTTTGATCTCATTCTGGCTGCAAACTACTTGAACATCAAGAGCCTTTTGGACCTGACATGCCAGACAGTTGCAGACATGATCAAGGGTAAGATACCAGAAGAGATCAGAAAGACCTTCAACATCAAGAACGACTTCACCCCGGAGGAAGAGGAGGAAGTTCGTCGTGAGAACCAATGGGCGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

4.63

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	68, 201
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	313, 400, 467
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	242, 270
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	2 cut(s)	162, 240
ApeKI	GCWGC	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	76, 119
AspS9I	GGNCC	2 cut(s)	268, 331
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	16, 139, 409
AvaII	GGWCC	2 cut(s)	268, 331
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	244, 272
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	2 cut(s)	156, 219
BisI	GCNGC	2 cut(s)	201, 300
BlsI	GCNGC	2 cut(s)	202, 301
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	244, 272, 422
Bme18I	GGWCC	2 cut(s)	268, 331
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	268, 331
BmrFI	CCNGG	3 cut(s)	244, 272, 422
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	4 cut(s)	165, 225, 243, 420
BseBI	CCWGG	2 cut(s)	244, 272
BseDI	CCNNGG	4 cut(s)	165, 225, 243, 420
BseRI	GAGGAG	2 cut(s)	77, 446
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	164, 242
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	422
BsnI	GGCC	2 cut(s)	164, 242
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BspACI	CCGC	2 cut(s)	68, 201
BspANI	GGCC	2 cut(s)	164, 242
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	165, 225, 243, 420
BssMI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	244, 272
Bst4CI	ACNGT	2 cut(s)	128, 349
Bst6I	CTCTTC	3 cut(s)	26, 375, 423
BstACI	GRCGYC	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 119
BstKTI	GATC	9 cut(s)	24, 105, 159, 222, 235, 250, 289, 363, 387
BstMBI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	244, 272
BstNSI	RCATGY	2 cut(s)	194, 342
BstSCI	CCNGG	3 cut(s)	242, 270, 420
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	156, 219
BstYI	RGATCY	2 cut(s)	156, 219
BsuRI	GGCC	2 cut(s)	164, 242
CfoI	GCGC	2 cut(s)	76, 119
Cfr13I	GGNCC	2 cut(s)	268, 331
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	100, 191, 339, 358
CviJI	RGCY	7 cut(s)	36, 164, 208, 242, 275, 299, 324
CviKI_1	RGCY	7 cut(s)	36, 164, 208, 242, 275, 299, 324
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	9 cut(s)	23, 104, 158, 221, 234, 249, 288, 362, 386
DpnII	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	26, 375, 423
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	3 cut(s)	26, 375, 423
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	268, 331
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	242, 270
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	103, 194, 342, 361
FaiI	YATR	4 cut(s)	101, 192, 340, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	4 cut(s)	99, 190, 338, 357
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	201, 300
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	201, 300
GlaI	GCGC	2 cut(s)	75, 118
GluI	GCNGC	2 cut(s)	201, 300
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	164, 242
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	76, 119
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	103, 194, 342, 361
Hin6I	GCGC	2 cut(s)	74, 117
HinP1I	GCGC	2 cut(s)	74, 117
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	47, 80
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	16, 139, 409
Hpy166II	GTNNAC	2 cut(s)	196, 268
Hpy188I	TCNGA	3 cut(s)	40, 226, 389
Hpy188III	TCNNGA	4 cut(s)	251, 319, 406, 446
Hpy8I	GTNNAC	2 cut(s)	196, 268
Hpy99I	CGWCG	7 cut(s)	10, 13, 16, 44, 200, 215, 447
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	128, 349
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	183, 302, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	103, 194, 342, 361
HspAI	GCGC	2 cut(s)	74, 117
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	81, 145
MalI	GATC	9 cut(s)	23, 104, 158, 221, 234, 249, 288, 362, 386
MboI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
MboII	GAAGA	6 cut(s)	28, 31, 43, 229, 392, 440
MflI	RGATCY	2 cut(s)	156, 219
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	56, 89
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	49, 55, 58, 100, 180, 220, 418, 424, 427
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	164
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	3 cut(s)	244, 272, 422
MvaI	CCWGG	2 cut(s)	244, 272
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
NlaIII	CATG	4 cut(s)	103, 194, 342, 361
NmuCI	GTSAC	2 cut(s)	81, 145
NspI	RCATGY	2 cut(s)	194, 342
PceI	AGGCCT	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 117
PdmI	GAANNNNTTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	202, 301
PleI	GAGTC	2 cut(s)	55, 88
PpsI	GAGTC	2 cut(s)	55, 88
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	242, 270
PspGI	CCWGG	2 cut(s)	242, 270
PspPI	GGNCC	2 cut(s)	268, 331
PsuI	RGATCY	2 cut(s)	156, 219
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	201, 300
Sau3AI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
Sau96I	GGNCC	2 cut(s)	268, 331
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	56, 89
ScrFI	CCNGG	3 cut(s)	244, 272, 422
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	38, 60, 147, 171, 267, 336, 398
SinI	GGWCC	2 cut(s)	268, 331
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	68, 201
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	242, 270, 420
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	128, 349
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	6 cut(s)	14, 54, 60, 105, 174, 195
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	81, 145
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	81, 145
VpaK11BI	GGWCC	2 cut(s)	268, 331
XceI	RCATGY	2 cut(s)	194, 342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.