Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

6656896 .. 6658330

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCACATGACGCATCAAAGGTTTCTAGGGTAACCACAGCAGCGATCGGAACGATGTCGTCCGGAAGGAAGATAACGCTGAAGAGCTCCGATGGCGAGTCGTTCGAGGTGGACGAGGCGGTGGCTTTGGAATCGCAGACCATCAAGCACATGATCGAGGACGATTGCGCCGACAATGGGATCCCTCTCCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGCAAGAAGCACGTTGACGCTGCGCCTAAGTCCGACGACCGCTCCTCCTCCTCCGGCGACGATGAGCTCAAGAACTGGGACGCCGACTTCGTCAAGGTCGACCAGGCCACCCTCTTCGATCTCATCCTGGCTGCAAACTATCTAAACATCAAGAACTTGCTCGACCTTACTTGCCAAACGGTGGCGGACATGATCAAGGGGAAAACACCTGAGGAGATTCGCAAGACATTCAACATCAAGAATGACTTTACACCAGAGGAAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

177

Amino Acids

19.71

Weight (kDa)

4.73

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	24 - 82	7.7e-32	Skp1 family, tetramerisation domain
Skp1	PF01466	128 - 175	2.6e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	4 cut(s)	119, 271, 416, 505
AclWI	GGATC	2 cut(s)	175, 188
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	177, 412
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	333, 357
AluBI	AGCT	2 cut(s)	87, 298
AluI	AGCT	2 cut(s)	87, 298
Alw21I	GWGCWC	2 cut(s)	89, 300
AlwI	GGATC	2 cut(s)	175, 188
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	2 cut(s)	213, 336
ApeKI	GCWGC	3 cut(s)	41, 251, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	2 cut(s)	170, 256
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	89, 300
Bbv12I	GWGCWC	2 cut(s)	89, 300
BbvI	GCAGC	3 cut(s)	53, 238, 349
BccI	CCATC	2 cut(s)	86, 149
BciT130I	CCWGG	2 cut(s)	335, 359
BclI	TGATCA	1 cut(s)	423
BfaI	CTAG	1 cut(s)	27
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	3 cut(s)	42, 252, 363
BlsI	GCNGC	3 cut(s)	43, 253, 364
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	335, 359
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	335, 359
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 260, 287, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 412
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	335, 359
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	177, 412
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	6 cut(s)	265, 268, 271, 458, 509, 512
BseXI	GCAGC	3 cut(s)	53, 238, 349
Bsh1285I	CGRYCG	2 cut(s)	48, 271
BshFI	GGCC	2 cut(s)	215, 338
BsiEI	CGRYCG	2 cut(s)	48, 271
BsiHKAI	GWGCWC	2 cut(s)	89, 300
BsiSI	CCGG	2 cut(s)	63, 285
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	177, 412
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	215, 338
Bsp1286I	GDGCHC	2 cut(s)	89, 300
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
BspACI	CCGC	4 cut(s)	119, 271, 416, 505
BspANI	GGCC	2 cut(s)	215, 338
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	175, 188
BspQI	GCTCTTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	335, 359
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	3 cut(s)	77, 350, 486
BstACI	GRCGYC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	258, 441
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	170, 256
BstKTI	GATC	6 cut(s)	48, 156, 183, 210, 352, 426
BstMBI	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
BstMCI	CGRYCG	2 cut(s)	48, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 93
BstNI	CCWGG	2 cut(s)	335, 359
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	333, 357
BstV1I	GCAGC	3 cut(s)	53, 238, 349
BstX2I	RGATCY	2 cut(s)	180, 207
BstYI	RGATCY	2 cut(s)	180, 207
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	215, 338
BtsCI	GGATG	1 cut(s)	354
CfoI	GCGC	2 cut(s)	170, 256
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	3 cut(s)	20, 257, 320
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	8, 151, 421
CviJI	RGCY	7 cut(s)	87, 125, 215, 298, 338, 362, 524
CviKI_1	RGCY	7 cut(s)	87, 125, 215, 298, 338, 362, 524
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	258, 441
DpnI	GATC	6 cut(s)	47, 155, 182, 209, 351, 425
DpnII	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	77, 350, 486
EarI	CTCTTC	3 cut(s)	77, 350, 486
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	2 cut(s)	87, 298
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	89, 300
Eco47I	GGWCC	1 cut(s)	502
Eco53kI	GAGCTC	2 cut(s)	87, 298
Eco57I	CTGAAG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	441
Eco91I	GGTNACC	1 cut(s)	31
EcoICRI	GAGCTC	2 cut(s)	87, 298
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	333, 357
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	89, 300
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	11, 154, 424
FaiI	YATR	3 cut(s)	9, 152, 422
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	7, 150, 420
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	42, 252, 363
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	2 cut(s)	89, 300
Fsp4HI	GCNGC	3 cut(s)	42, 252, 363
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	169, 255
GluI	GCNGC	3 cut(s)	42, 252, 363
HaeIII	GGCC	2 cut(s)	215, 338
HapII	CCGG	2 cut(s)	63, 285
HgaI	GACGC	3 cut(s)	20, 257, 320
HhaI	GCGC	2 cut(s)	170, 256
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	11, 154, 424
Hin6I	GCGC	2 cut(s)	168, 254
HinP1I	GCGC	2 cut(s)	168, 254
HincII	GTYRAC	2 cut(s)	247, 331
HindII	GTYRAC	2 cut(s)	247, 331
HinfI	GANTC	3 cut(s)	98, 131, 448
HpaII	CCGG	2 cut(s)	63, 285
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	112, 247, 331
Hpy188I	TCNGA	3 cut(s)	50, 91, 265
Hpy188III	TCNNGA	4 cut(s)	63, 301, 382, 469
Hpy8I	GTNNAC	3 cut(s)	112, 247, 331
Hpy99I	CGWCG	2 cut(s)	269, 293
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	195, 243
HpyCH4V	TGCA	2 cut(s)	234, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 93
HpyF3I	CTNAG	2 cut(s)	258, 441
HpySE526I	ACGT	2 cut(s)	195, 243
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	11, 154, 424
HspAI	GCGC	2 cut(s)	168, 254
Kpn2I	TCCGGA	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	92, 278
Lsp1109I	GCAGC	3 cut(s)	53, 238, 349
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	195, 243
MaeIII	GTNAC	2 cut(s)	31, 196
MalI	GATC	6 cut(s)	47, 155, 182, 209, 351, 425
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
MboII	GAAGA	4 cut(s)	82, 94, 337, 503
MflI	RGATCY	2 cut(s)	180, 207
MhlI	GDGCHC	2 cut(s)	89, 300
MlsI	TGGCCA	1 cut(s)	215
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	2 cut(s)	63, 285
MspR9I	CCNGG	2 cut(s)	335, 359
MvaI	CCWGG	2 cut(s)	335, 359
MwoI	GCNNNNNNNGC	2 cut(s)	11, 93
NdeII	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
NlaIII	CATG	3 cut(s)	11, 154, 424
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	4 cut(s)	111, 168, 318, 327
PfeI	GAWTC	2 cut(s)	131, 448
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	43, 253, 364
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp124BI	GAGCTC	2 cut(s)	89, 300
Psp6I	CCWGG	2 cut(s)	333, 357
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	333, 357
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	180, 207
PsyI	GACNNNGTC	1 cut(s)	320
PvuI	CGATCG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacI	GAGCTC	2 cut(s)	89, 300
SalI	GTCGAC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	3 cut(s)	42, 252, 363
Sau3AI	GATC	6 cut(s)	45, 153, 180, 207, 349, 423
Sau96I	GGNCC	1 cut(s)	502
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	335, 359
SduI	GDGCHC	2 cut(s)	89, 300
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SsiI	CCGC	4 cut(s)	119, 271, 416, 505
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	2 cut(s)	89, 300
StyD4I	CCNGG	2 cut(s)	333, 357
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	198, 246
TaqI	TCGA	6 cut(s)	105, 156, 225, 330, 348, 393
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	131, 448
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	41, 251, 362
Tsp45I	GTSAC	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.