Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

10398388 .. 10399707

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTCGTCGGCGGCGAAGAAGATCACCCTGAAGAGCTCGGACGGCGAGTCCTTCGAGGTCGAAGAGGCCGTCGCGCTGGAGTCGCAGACGATCAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCCTCTCCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGTAAGAAACACGTCGACGCTGCTAAGCCCGACGAGAAGGCTGCAAACTACTTGAATATCAAGAATCTGCTGGACCTGACATGCCAGACTGTTGCGGACATGATCAAGGGGAAGACCCCAGAGGAGATCAGGAAGACCTTCAATATCAAGAATGACTTCACCCCCGAGGAAGAGGAGGAGGTGCGTCGTGAGAACCAATGGGCATTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

4.88

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	7 - 66	2.8e-32	Skp1 family, tetramerisation domain
Skp1	PF01466	82 - 129	1.4e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	14, 278
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	238, 325
AhdI	GACNNNNNGTC	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	196
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	69, 165
ApeKI	GCWGC	2 cut(s)	203, 224
ApoI	RAATTY	1 cut(s)	132
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
Asp700I	GAANNNNTTC	2 cut(s)	320, 338
AspLEI	GCGC	2 cut(s)	79, 122
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	19, 142, 334
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	302, 323
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	190, 211
BceAI	ACGGC	2 cut(s)	56, 61
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BclI	TGATCA	1 cut(s)	285
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	3 cut(s)	15, 204, 225
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	3 cut(s)	16, 205, 226
BmcAI	AGTACT	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	256
BpiI	GAAGAC	2 cut(s)	302, 323
BpmI	CTGGAG	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	168, 348
BseDI	CCNNGG	2 cut(s)	168, 348
BseRI	GAGGAG	3 cut(s)	320, 371, 374
BseXI	GCAGC	2 cut(s)	190, 211
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	71, 167
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	71, 167
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	2 cut(s)	14, 278
BspANI	GGCC	2 cut(s)	71, 167
BspFNI	CGCG	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	168, 348
BssMI	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	185, 274
Bst6I	CTCTTC	3 cut(s)	29, 60, 348
BstBI	TTCGAA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	79, 122
BstKTI	GATC	6 cut(s)	27, 96, 108, 162, 288, 312
BstMBI	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 85
BstNSI	RCATGY	1 cut(s)	267
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	190, 211
BstV2I	GAAGAC	2 cut(s)	302, 323
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	71, 167
BtrI	CACGTC	1 cut(s)	196
CfoI	GCGC	2 cut(s)	79, 122
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	2 cut(s)	209, 356
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	103, 264, 283
CviJI	RGCY	5 cut(s)	39, 71, 167, 211, 224
CviKI_1	RGCY	5 cut(s)	39, 71, 167, 211, 224
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	6 cut(s)	26, 95, 107, 161, 287, 311
DpnII	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	29, 60, 348
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	3 cut(s)	29, 60, 348
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	106, 267, 286
FaiI	YATR	3 cut(s)	104, 265, 284
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	3 cut(s)	102, 263, 282
FbaI	TGATCA	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	15, 204, 225
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	15, 204, 225
GlaI	GCGC	2 cut(s)	78, 121
GluI	GCNGC	3 cut(s)	15, 204, 225
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	71, 167
HgaI	GACGC	2 cut(s)	209, 356
HhaI	GCGC	2 cut(s)	79, 122
Hin1II	CATG	3 cut(s)	106, 267, 286
Hin6I	GCGC	2 cut(s)	77, 120
HinP1I	GCGC	2 cut(s)	77, 120
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	50, 83, 247
HphI	GGTGA	3 cut(s)	19, 142, 334
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	4 cut(s)	244, 313, 331, 371
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	7 cut(s)	10, 13, 77, 200, 203, 218, 372
HpyAV	CCTTC	3 cut(s)	64, 214, 331
HpyCH4III	ACNGT	2 cut(s)	185, 274
HpyCH4IV	ACGT	2 cut(s)	147, 195
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 85
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	147, 195
Hsp92II	CATG	3 cut(s)	106, 267, 286
HspAI	GCGC	2 cut(s)	77, 120
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	44, 65, 166, 239, 272, 281, 298, 315
Lsp1109I	GCAGC	2 cut(s)	190, 211
MaeII	ACGT	2 cut(s)	147, 195
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	6 cut(s)	26, 95, 107, 161, 287, 311
MboI	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
MboII	GAAGA	7 cut(s)	31, 34, 46, 77, 307, 328, 365
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	59, 92
MnlI	CCTC	9 cut(s)	52, 61, 103, 147, 298, 343, 349, 352, 355
Mox20I	TGGCCA	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	320, 338
MscI	TGGCCA	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	45, 85
NdeII	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
NlaIII	CATG	3 cut(s)	106, 267, 286
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 69, 120
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	2 cut(s)	320, 338
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	16, 205, 226
PleI	GAGTC	2 cut(s)	58, 91
PpsI	GAGTC	2 cut(s)	58, 91
Psp124BI	GAGCTC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	29
SatI	GCNGC	3 cut(s)	15, 204, 225
Sau3AI	GATC	6 cut(s)	24, 93, 105, 159, 285, 309
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	59, 92
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	8 cut(s)	41, 63, 150, 174, 198, 261, 323, 366
SfuI	TTCGAA	1 cut(s)	390
SgrDI	CGTCGACG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	2 cut(s)	14, 278
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	185, 274
TaiI	ACGT	2 cut(s)	150, 198
TaqI	TCGA	6 cut(s)	57, 63, 108, 177, 198, 390
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	203, 224
Tsp45I	GTSAC	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	320, 338
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.