Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

33286001 .. 33287296

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCAGAGAGGAAGATAACACTGAAAAGCTCGGACGGCGAGACGTTCGAGGTGGACGAGGCGGTGGCCTTGGAGTCTCAGACGATAAAGCACATGGTCGAGGACGATTGTGCGGACAATGGGATCCCACTTCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGCAAGAAGCACGTCGACGCTGCTAAGCCCGACGACCGCCCTTCCAACGATGAGGACCTCAAGGCCTGGGACACCGACTTTGTCAAGATCGACCAGGCCACCCTCTTCGATCTCATACTGGCTGCAAACTATTTGAACATAAAGAGCTTGCTGGACCTGACTTGCCAAACGGTGGCGGACATGATCAAGGGCAAAACTCCTGAGGAGATTCGCAAGACGTTCAACATTAAGAACGACTTTACGCCCGAGGAAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.77

Weight (kDa)

4.56

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	5 cut(s)	65, 116, 214, 353, 442
AclWI	GGATC	2 cut(s)	121, 134
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	313, 400
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	242, 270
AluBI	AGCT	2 cut(s)	33, 324
AluI	AGCT	2 cut(s)	33, 324
Alw26I	GTCTC	2 cut(s)	38, 84
AlwI	GGATC	2 cut(s)	121, 134
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	4 cut(s)	69, 159, 240, 273
ApeKI	GCWGC	2 cut(s)	197, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	3 cut(s)	232, 331, 439
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	3 cut(s)	232, 331, 439
AxyI	CCTNAGG	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	184, 286
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	244, 272
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	38, 84
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	198, 300
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	199, 301
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	244, 272
Bme18I	GGWCC	3 cut(s)	232, 331, 439
BmeT110I	CYCGRG	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	232, 331, 439
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	244, 272
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	72, 162, 243, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	300
Bse21I	CCTNAGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	244, 272
BseDI	CCNNGG	4 cut(s)	72, 162, 243, 423
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	95, 369
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	3 cut(s)	395, 446, 449
BseXI	GCAGC	2 cut(s)	184, 286
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	4 cut(s)	71, 161, 242, 275
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	38, 84
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	71, 161, 242, 275
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	126, 153, 264, 286, 360
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	65, 116, 214, 353, 442
BspANI	GGCC	4 cut(s)	71, 161, 242, 275
BspCNI	CTCAG	2 cut(s)	94, 370
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	4 cut(s)	72, 162, 243, 423
BssMI	GATC	5 cut(s)	126, 153, 264, 286, 360
BssT1I	CCWWGG	2 cut(s)	72, 162
Bst2UI	CCWGG	2 cut(s)	244, 272
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	287, 423
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	81, 201, 378
BstKTI	GATC	5 cut(s)	129, 156, 267, 289, 363
BstMAI	GTCTC	2 cut(s)	38, 84
BstMBI	GATC	5 cut(s)	126, 153, 264, 286, 360
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	244, 272
BstSCI	CCNGG	2 cut(s)	242, 270
BstV1I	GCAGC	2 cut(s)	184, 286
BstX2I	RGATCY	2 cut(s)	126, 153
BstYI	RGATCY	2 cut(s)	126, 153
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	71, 161, 242, 275
BtrI	CACGTC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	232, 331, 439
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	97, 358
CviJI	RGCY	9 cut(s)	33, 71, 161, 205, 242, 275, 299, 324, 461
CviKI_1	RGCY	9 cut(s)	33, 71, 161, 205, 242, 275, 299, 324, 461
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	81, 201, 378
DpnI	GATC	5 cut(s)	128, 155, 266, 288, 362
DpnII	GATC	5 cut(s)	126, 153, 264, 286, 360
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	287, 423
EarI	CTCTTC	2 cut(s)	287, 423
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	72, 162
Eco147I	AGGCCT	1 cut(s)	242
Eco47I	GGWCC	3 cut(s)	232, 331, 439
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	242, 270
EcoT14I	CCWWGG	2 cut(s)	72, 162
ErhI	CCWWGG	2 cut(s)	72, 162
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	100, 361
FaiI	YATR	4 cut(s)	98, 293, 317, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	96, 357
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	198, 300
Fsp4HI	GCNGC	2 cut(s)	198, 300
GluI	GCNGC	2 cut(s)	198, 300
HaeIII	GGCC	4 cut(s)	71, 161, 242, 275
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	100, 361
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	77, 385
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	58, 193
Hpy188I	TCNGA	3 cut(s)	10, 37, 84
Hpy188III	TCNNGA	2 cut(s)	262, 377
Hpy8I	GTNNAC	2 cut(s)	58, 193
Hpy99I	CGWCG	3 cut(s)	194, 197, 212
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	4 cut(s)	47, 141, 189, 395
HpyCH4V	TGCA	2 cut(s)	180, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	81, 201, 378
HpySE526I	ACGT	4 cut(s)	47, 141, 189, 395
Hsp92II	CATG	2 cut(s)	100, 361
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	126, 153, 264, 286, 360
Lsp1109I	GCAGC	2 cut(s)	184, 286
MaeII	ACGT	4 cut(s)	47, 141, 189, 395
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	128, 155, 266, 288, 362
MboI	GATC	5 cut(s)	126, 153, 264, 286, 360
MboII	GAAGA	3 cut(s)	28, 274, 440
MflI	RGATCY	2 cut(s)	126, 153
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	244, 272
MvaI	CCWGG	2 cut(s)	244, 272
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	5 cut(s)	126, 153, 264, 286, 360
NlaIII	CATG	2 cut(s)	100, 361
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	199, 301
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	242, 270
PspGI	CCWGG	2 cut(s)	242, 270
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	3 cut(s)	232, 331, 439
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	126, 153
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	198, 300
Sau3AI	GATC	5 cut(s)	126, 153, 264, 286, 360
Sau96I	GGNCC	3 cut(s)	232, 331, 439
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	244, 272
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	232, 331, 439
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	5 cut(s)	65, 116, 214, 353, 442
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	242, 270
StyI	CCWWGG	2 cut(s)	72, 162
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	4 cut(s)	50, 144, 192, 398
TaqI	TCGA	6 cut(s)	51, 102, 171, 192, 267, 285
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	197, 299
Tsp45I	GTSAC	1 cut(s)	142
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	3 cut(s)	232, 331, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.