Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

4839883 .. 4841839

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1036500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGTCGTCGTCGAAGATCACCCTGCAGAGCTCCGACGGCGAGTCGTTCGAGGTCGAGGAGGCGGTGGCGCTGGAATCACAGACCATTGGGCTCGTGATCGAGAACGACTGCGCCGACAACTGTATTCCTTTGCCCAACGTCACCAGCAAGATCTTGGCCATGGTCATCGAGTACTGCAAGAGGCACGTCGACGCCGCCAAGCTCGACGAGAAGATCTTCGAGGACGATCTCGAGTCCTGGGATCAGGCGTTCGTAAAGGTGGACCAGGCTACGCTGTTTGATCTCATTAACGCTGCAGCCTACTTGAACATCAAGAGCCTTTTGGACCTGACATGCCAGGCAGTTGCAGACATGATCAAGGGTAAGACTCCAGAAGAGATCAGAAAGACCTTCAACATCAAGGACGAGTTCACCCTGGAGGAAGAGGAGGAAGTTCGTCGTGAGAACCAGTGGGCGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

4.31

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 64	1.8e-26	Skp1 family, tetramerisation domain
Skp1	PF01466	106 - 153	9.3e-28	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	65, 198
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	310, 397, 464
AhdI	GACNNNNNGTC	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	4 cut(s)	239, 267, 339, 417
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	2 cut(s)	33, 205
AluI	AGCT	2 cut(s)	33, 205
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	296, 299
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	73, 116
AspS9I	GGNCC	2 cut(s)	265, 328
AsuHPI	GGTGA	3 cut(s)	13, 136, 406
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	265, 328
BalI	TGGCCA	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	35, 96
BauI	CACGAG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	283, 311
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	4 cut(s)	241, 269, 341, 419
BclI	TGATCA	1 cut(s)	357
BfmI	CTRYAG	2 cut(s)	26, 297
BfoI	RGCGCY	1 cut(s)	74
BglII	AGATCT	2 cut(s)	153, 216
BisI	GCNGC	3 cut(s)	198, 297, 300
BlsI	GCNGC	3 cut(s)	199, 298, 301
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	4 cut(s)	241, 269, 341, 419
Bme18I	GGWCC	2 cut(s)	265, 328
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	265, 328
BmrFI	CCNGG	4 cut(s)	241, 269, 341, 419
BpmI	CTGGAG	2 cut(s)	357, 440
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	162, 240, 417
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	4 cut(s)	241, 269, 341, 419
BseDI	CCNNGG	3 cut(s)	162, 240, 417
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	2 cut(s)	74, 443
BseXI	GCAGC	2 cut(s)	283, 311
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	233
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	35, 96
Bsp143I	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	2 cut(s)	65, 198
BspANI	GGCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	30, 301
BspPI	GGATC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	162, 240, 417
BssMI	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	4 cut(s)	241, 269, 341, 419
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	372, 420
BstACI	GRCGYC	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 116
BstKTI	GATC	9 cut(s)	21, 102, 156, 219, 232, 247, 286, 360, 384
BstMBI	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	4 cut(s)	241, 269, 341, 419
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	4 cut(s)	239, 267, 339, 417
BstSFI	CTRYAG	2 cut(s)	26, 297
BstV1I	GCAGC	2 cut(s)	283, 311
BstX2I	RGATCY	2 cut(s)	153, 216
BstYI	RGATCY	2 cut(s)	153, 216
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	73, 116
Cfr13I	GGNCC	2 cut(s)	265, 328
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	163, 336, 355
CviJI	RGCY	7 cut(s)	33, 94, 161, 205, 272, 302, 321
CviKI_1	RGCY	7 cut(s)	33, 94, 161, 205, 272, 302, 321
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	9 cut(s)	20, 101, 155, 218, 231, 246, 285, 359, 383
DpnII	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	372, 420
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	2 cut(s)	372, 420
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	35, 96
Eco47I	GGWCC	2 cut(s)	265, 328
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	4 cut(s)	239, 267, 339, 417
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	35, 96
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	166, 339, 358
FaiI	YATR	3 cut(s)	164, 337, 356
FatI	CATG	3 cut(s)	162, 335, 354
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	198, 297, 300
FriOI	GRGCYC	2 cut(s)	35, 96
Fsp4HI	GCNGC	3 cut(s)	198, 297, 300
GlaI	GCGC	2 cut(s)	72, 115
GluI	GCNGC	3 cut(s)	198, 297, 300
GsuI	CTGGAG	2 cut(s)	357, 440
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	73, 116
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	166, 339, 358
Hin6I	GCGC	2 cut(s)	71, 114
HinP1I	GCGC	2 cut(s)	71, 114
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	44, 77, 236, 370
HphI	GGTGA	3 cut(s)	13, 136, 406
Hpy166II	GTNNAC	3 cut(s)	193, 265, 414
Hpy188I	TCNGA	2 cut(s)	37, 386
Hpy188III	TCNNGA	6 cut(s)	97, 103, 233, 316, 374, 443
Hpy8I	GTNNAC	3 cut(s)	193, 265, 414
Hpy99I	CGWCG	8 cut(s)	10, 13, 16, 41, 194, 197, 212, 444
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	141, 189
HpyCH4V	TGCA	4 cut(s)	28, 180, 299, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpySE526I	ACGT	2 cut(s)	141, 189
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	166, 339, 358
HspAI	GCGC	2 cut(s)	71, 114
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	283, 311
MaeII	ACGT	2 cut(s)	141, 189
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	9 cut(s)	20, 101, 155, 218, 231, 246, 285, 359, 383
MboI	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
MboII	GAAGA	5 cut(s)	28, 211, 226, 389, 437
MflI	RGATCY	2 cut(s)	153, 216
MhlI	GDGCHC	2 cut(s)	35, 96
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	3 cut(s)	53, 245, 364
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	46, 52, 55, 177, 217, 415, 421, 424
Mox20I	TGGCCA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	241, 269, 341, 419
MvaI	CCWGG	4 cut(s)	241, 269, 341, 419
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
NlaIII	CATG	3 cut(s)	166, 339, 358
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 114
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	199, 298, 301
PleI	GAGTC	3 cut(s)	52, 244, 364
PpsI	GAGTC	3 cut(s)	52, 244, 364
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	4 cut(s)	239, 267, 339, 417
PspGI	CCWGG	4 cut(s)	239, 267, 339, 417
PspPI	GGNCC	2 cut(s)	265, 328
PstI	CTGCAG	2 cut(s)	30, 301
PsuI	RGATCY	2 cut(s)	153, 216
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	198, 297, 300
Sau3AI	GATC	9 cut(s)	18, 99, 153, 216, 229, 244, 283, 357, 381
Sau96I	GGNCC	2 cut(s)	265, 328
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	3 cut(s)	53, 245, 364
ScrFI	CCNGG	4 cut(s)	241, 269, 341, 419
SduI	GDGCHC	2 cut(s)	35, 96
SetI	ASST	8 cut(s)	35, 57, 144, 192, 207, 264, 333, 395
SfcI	CTRYAG	2 cut(s)	26, 297
Sfr274I	CTCGAG	1 cut(s)	233
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	265, 328
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	2 cut(s)	65, 198
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	239, 267, 339, 417
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	144, 192
TaqI	TCGA	9 cut(s)	14, 51, 57, 102, 171, 192, 207, 222, 234
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	296, 299
Tsp45I	GTSAC	1 cut(s)	142
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	265, 328
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.