Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

11100208 .. 11101622

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCGTCGGCGAAGAAGATCACCCTGAAGAGCTCGGACGGCGAGTCCTTCGAGGTCGAAGAGGCCGTCGCGCTGGAGTCGCAGACGATCAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCCTCTTCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGTAAGAAACACGTCGACGCTGCTAAGCCCGACGAGAAGGTCACCGAGGAAGAGCTCAAGATTTGGGACCAGGATTTCGTTAAGGTTGACCAGGCCACGCTCTTCGATCTAATCTTGGCTGCAAACTACTTGAATATCAAGAATCTGCTGGACCTGACATGCCAGACTGTTGCGGACATGATCAAGGGAAAGACCCCAGAGGAGATCAGGAAGACCTTCAATATCAAGAATGACTTCACCCCGGAGGAAGAGGAGGAGGTGCGTCGTGAGAACCAATGGGCATTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

4.64

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	4.2e-32	Skp1 family, tetramerisation domain
Skp1	PF01466	107 - 154	2e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	313, 400
AhdI	GACNNNNNGTC	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	249, 270
AluBI	AGCT	2 cut(s)	36, 235
AluI	AGCT	2 cut(s)	36, 235
Alw21I	GWGCWC	2 cut(s)	38, 237
AoxI	GGCC	3 cut(s)	66, 162, 273
ApeKI	GCWGC	2 cut(s)	200, 299
ApoI	RAATTY	1 cut(s)	129
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 239, 271
Asp700I	GAANNNNTTC	2 cut(s)	395, 413
AspLEI	GCGC	2 cut(s)	76, 119
AspS9I	GGNCC	2 cut(s)	247, 331
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	16, 139, 214, 409
AsuII	TTCGAA	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	247, 331
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	38, 237
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	38, 237
BbvI	GCAGC	2 cut(s)	187, 286
BceAI	ACGGC	2 cut(s)	53, 58
BciT130I	CCWGG	2 cut(s)	251, 272
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	2 cut(s)	201, 300
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	2 cut(s)	202, 301
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	251, 272, 422
Bme18I	GGWCC	2 cut(s)	247, 331
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	247, 331
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	251, 272, 422
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	165, 225, 420
BseBI	CCWGG	2 cut(s)	251, 272
BseDI	CCNNGG	3 cut(s)	165, 225, 420
BseRI	GAGGAG	3 cut(s)	395, 446, 449
BseXI	GCAGC	2 cut(s)	187, 286
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	68, 164, 275
BsiHKAI	GWGCWC	2 cut(s)	38, 237
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	68, 164, 275
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	38, 237
Bsp143I	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	3 cut(s)	68, 164, 275
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	248
BspQI	GCTCTTC	3 cut(s)	26, 225, 287
BspT104I	TTCGAA	1 cut(s)	465
BssECI	CCNNGG	3 cut(s)	165, 225, 420
BssMI	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	251, 272
Bst4CI	ACNGT	2 cut(s)	182, 349
Bst6I	CTCTTC	6 cut(s)	26, 57, 141, 225, 287, 423
BstBI	TTCGAA	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	76, 119
BstKTI	GATC	7 cut(s)	24, 93, 105, 159, 289, 363, 387
BstMBI	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 82
BstNI	CCWGG	2 cut(s)	251, 272
BstNSI	RCATGY	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	249, 270, 420
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	187, 286
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	68, 164, 275
BtrI	CACGTC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	76, 119
Cfr13I	GGNCC	2 cut(s)	247, 331
CseI	GACGC	2 cut(s)	206, 431
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	100, 339, 358
CviJI	RGCY	7 cut(s)	36, 68, 164, 208, 235, 275, 299
CviKI_1	RGCY	7 cut(s)	36, 68, 164, 208, 235, 275, 299
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	7 cut(s)	23, 92, 104, 158, 288, 362, 386
DpnII	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	6 cut(s)	26, 57, 141, 225, 287, 423
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	6 cut(s)	26, 57, 141, 225, 287, 423
Ecl136II	GAGCTC	2 cut(s)	36, 235
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	38, 237
Eco47I	GGWCC	2 cut(s)	247, 331
Eco53kI	GAGCTC	2 cut(s)	36, 235
Eco57I	CTGAAG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	220
EcoICRI	GAGCTC	2 cut(s)	36, 235
EcoO65I	GGTNACC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	249, 270
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	38, 237
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	103, 342, 361
FaiI	YATR	3 cut(s)	101, 340, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	99, 338, 357
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	201, 300
FriOI	GRGCYC	2 cut(s)	38, 237
Fsp4HI	GCNGC	2 cut(s)	201, 300
GlaI	GCGC	2 cut(s)	75, 118
GluI	GCNGC	2 cut(s)	201, 300
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	68, 164, 275
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	2 cut(s)	206, 431
HhaI	GCGC	2 cut(s)	76, 119
Hin1II	CATG	3 cut(s)	103, 342, 361
Hin6I	GCGC	2 cut(s)	74, 117
HinP1I	GCGC	2 cut(s)	74, 117
HincII	GTYRAC	2 cut(s)	196, 268
HindII	GTYRAC	2 cut(s)	196, 268
HinfI	GANTC	3 cut(s)	47, 80, 322
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	4 cut(s)	16, 139, 214, 409
Hpy166II	GTNNAC	2 cut(s)	196, 268
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	5 cut(s)	238, 319, 388, 406, 446
Hpy8I	GTNNAC	2 cut(s)	196, 268
Hpy99I	CGWCG	7 cut(s)	10, 13, 74, 197, 200, 215, 447
HpyAV	CCTTC	3 cut(s)	61, 211, 406
HpyCH4III	ACNGT	2 cut(s)	182, 349
HpyCH4IV	ACGT	2 cut(s)	144, 192
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 82
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	144, 192
Hsp92II	CATG	3 cut(s)	103, 342, 361
HspAI	GCGC	2 cut(s)	74, 117
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
LguI	GCTCTTC	3 cut(s)	26, 225, 287
Lsp1109I	GCAGC	2 cut(s)	187, 286
MaeII	ACGT	2 cut(s)	144, 192
MaeIII	GTNAC	2 cut(s)	145, 220
MalI	GATC	7 cut(s)	23, 92, 104, 158, 288, 362, 386
MboI	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
MboII	GAAGA	9 cut(s)	28, 31, 43, 74, 128, 242, 274, 403, 440
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	38, 237
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	56, 89
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	2 cut(s)	395, 413
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	164
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	3 cut(s)	251, 272, 422
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	251, 272
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	42, 82
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
NlaIII	CATG	3 cut(s)	103, 342, 361
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	2 cut(s)	145, 220
NspI	RCATGY	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	465
PciSI	GCTCTTC	3 cut(s)	26, 225, 287
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 66, 117
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	395, 413
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	202, 301
PleI	GAGTC	2 cut(s)	55, 88
PpsI	GAGTC	2 cut(s)	55, 88
Psp124BI	GAGCTC	2 cut(s)	38, 237
Psp6I	CCWGG	2 cut(s)	249, 270
PspEI	GGTNACC	1 cut(s)	220
PspGI	CCWGG	2 cut(s)	249, 270
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	247, 331
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	2 cut(s)	38, 237
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	3 cut(s)	26, 225, 287
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	201, 300
Sau3AI	GATC	7 cut(s)	21, 90, 102, 156, 286, 360, 384
Sau96I	GGNCC	2 cut(s)	247, 331
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	56, 89
ScrFI	CCNGG	3 cut(s)	251, 272, 422
SduI	GDGCHC	2 cut(s)	38, 237
SfuI	TTCGAA	1 cut(s)	465
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	247, 331
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	353
SstI	GAGCTC	2 cut(s)	38, 237
StyD4I	CCNGG	3 cut(s)	249, 270, 420
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	182, 349
TaiI	ACGT	2 cut(s)	147, 195
TaqI	TCGA	7 cut(s)	54, 60, 105, 174, 195, 285, 465
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	145, 220
TseI	GCWGC	2 cut(s)	200, 299
Tsp45I	GTSAC	2 cut(s)	145, 220
TspGWI	ACGGA	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	247, 331
XapI	RAATTY	1 cut(s)	129
XceI	RCATGY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	395, 413
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.