Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Forward (+)

47285610 .. 47287098

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACGTCGAACCCGAAGAGCGAGACGGACTTGGCCTTGGACGCCGGAGCGACCCGCCGGCTCTACCCGTCCATGGTTGATAGCCCGGAGCTCCGCTGGGCCTTCATTCGCAAAGTCTACGCCATCCTCACCGTCCAGCTACTCCTCACAGTCGCCGTCGCCGCCACCGTCGATTTAGTCCGTCCGATTGCTCACTTCCTTGTCAAAACCCGCGCCGGCTTGGGCGTCGACATCGCCGTCTTCGTCATGGCCCTCGCCGTGTTGGTGGCTTTGAGAGTTTACGGCAAGAAGCACCCGGTGAATTACCTCTTGATTGGGCTTTTCACAGTCTTGATGGGACTCATAGTCGGAGTGGGTTGTGCTTATACTGAAGAGAAGGTACTTTTGGAGGCTTGGGGTCTGACCATTGTGATTTTCATGAGCTTGACTGTCTATACATTCTGGGCTGCAAGGAGAGGCTATGATTTCAGCTTCCTTGGTCCTTTTCTGTTTGCAGCTCTGATTGTTCTTCTTGGATTTAGTCTGATTCAGATTCTCCATCCTCTGGGGAAAACCAGTCATATGATATTCGGCATTGTGGGATGTATCATCTTCTGTGGCTACATTGTCCATGATACGGATGAGCTGATCAAGCGCCACCAGTATGATGAGTACCTGTTGGCTGCAATCCAGCTCTACTTGGATGCTATCAACCTCTTCCTGAATTTGATCACAGCTATTGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

242

Amino Acids

26.84

Weight (kDa)

7.0

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 237	5.5e-46	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	2 cut(s)	117, 228
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	55, 94, 162, 211
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	3 cut(s)	5, 42, 225
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	381, 653
AfiI	CCNNNNNNNGG	3 cut(s)	73, 544, 616
AhdI	GACNNNNNGTC	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	9 cut(s)	91, 139, 423, 471, 497, 625, 673, 716, 726
AluI	AGCT	9 cut(s)	91, 139, 423, 471, 497, 625, 673, 716, 726
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	33, 99, 249
ApeKI	GCWGC	3 cut(s)	446, 494, 662
ApoI	RAATTY	1 cut(s)	703
AspLEI	GCGC	2 cut(s)	215, 636
AspS9I	GGNCC	3 cut(s)	99, 250, 479
AsuC2I	CCSGG	2 cut(s)	86, 296
AsuHPI	GGTGA	2 cut(s)	121, 310
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	433, 506, 649
BccI	CCATC	3 cut(s)	131, 328, 546
BceAI	ACGGC	4 cut(s)	140, 221, 242, 298
BclI	TGATCA	2 cut(s)	627, 708
BcnI	CCSGG	2 cut(s)	86, 296
BcoDI	GTCTC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	4 cut(s)	162, 447, 495, 663
BlsI	GCNGC	4 cut(s)	163, 448, 496, 664
Bme1390I	CCNGG	2 cut(s)	86, 296
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	99, 250, 479
BmrFI	CCNGG	2 cut(s)	86, 296
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	86, 296
BsaHI	GRCGYC	3 cut(s)	5, 42, 225
BsaJI	CCNNGG	3 cut(s)	36, 72, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 544, 616
Bse118I	RCCGGY	2 cut(s)	57, 215
Bse1I	ACTGG	2 cut(s)	555, 640
BseDI	CCNNGG	3 cut(s)	36, 72, 475
BseGI	GGATG	5 cut(s)	123, 538, 587, 625, 688
BseLI	CCNNNNNNNGG	3 cut(s)	73, 544, 616
BseNI	ACTGG	2 cut(s)	555, 640
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	433, 506, 649
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	35, 101, 251
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	45, 58, 86, 216, 296
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	73, 544, 616
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	35, 101, 251
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	627, 708
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	4 cut(s)	55, 94, 162, 211
BspANI	GGCC	3 cut(s)	35, 101, 251
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	417
BspQI	GCTCTTC	1 cut(s)	11
BsrFI	RCCGGY	2 cut(s)	57, 215
BsrI	ACTGG	2 cut(s)	555, 640
BssAI	RCCGGY	2 cut(s)	57, 215
BssECI	CCNNGG	3 cut(s)	36, 72, 475
BssMI	GATC	2 cut(s)	627, 708
BssNI	GRCGYC	3 cut(s)	5, 42, 225
BssT1I	CCWWGG	3 cut(s)	36, 72, 475
Bst4CI	ACNGT	5 cut(s)	133, 151, 169, 328, 430
Bst6I	CTCTTC	3 cut(s)	11, 366, 701
BstACI	GRCGYC	3 cut(s)	5, 42, 225
BstC8I	GCNNGC	2 cut(s)	59, 217
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	5 cut(s)	123, 538, 587, 625, 688
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	215, 636
BstKTI	GATC	2 cut(s)	630, 711
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	627, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
BstSCI	CCNGG	2 cut(s)	84, 294
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	433, 506, 649
BstV2I	GAAGAC	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	35, 101, 251
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	123, 538, 587, 625, 688
Cac8I	GCNNGC	2 cut(s)	59, 217
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	2 cut(s)	215, 636
Cfr10I	RCCGGY	2 cut(s)	57, 215
Cfr13I	GGNCC	3 cut(s)	99, 250, 479
CseI	GACGC	2 cut(s)	50, 214
Csp6I	GTAC	2 cut(s)	380, 652
CviAII	CATG	4 cut(s)	73, 247, 418, 611
CviQI	GTAC	2 cut(s)	380, 652
DpnI	GATC	2 cut(s)	629, 710
DpnII	GATC	2 cut(s)	627, 708
DraIII	CACNNNGTG	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	3 cut(s)	11, 366, 701
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	3 cut(s)	11, 366, 701
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	36, 72, 475
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	36, 72, 475
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	36, 72, 475
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	76, 250, 421, 614
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	4 cut(s)	72, 246, 417, 610
FauI	CCCGC	2 cut(s)	62, 218
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	2 cut(s)	627, 708
FblI	GTMKAC	2 cut(s)	117, 228
Fnu4HI	GCNGC	4 cut(s)	162, 447, 495, 663
FokI	GGATG	5 cut(s)	110, 525, 594, 632, 695
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	162, 447, 495, 663
GlaI	GCGC	2 cut(s)	214, 635
GluI	GCNGC	4 cut(s)	162, 447, 495, 663
GsaI	CCCAGC	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	35, 101, 251
HapII	CCGG	5 cut(s)	45, 58, 86, 216, 296
HgaI	GACGC	2 cut(s)	50, 214
HhaI	GCGC	2 cut(s)	215, 636
Hin1I	GRCGYC	3 cut(s)	5, 42, 225
Hin1II	CATG	4 cut(s)	76, 250, 421, 614
Hin6I	GCGC	2 cut(s)	213, 634
HinP1I	GCGC	2 cut(s)	213, 634
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	339, 526, 532
HpaII	CCGG	5 cut(s)	45, 58, 86, 216, 296
HphI	GGTGA	2 cut(s)	121, 310
Hpy166II	GTNNAC	3 cut(s)	118, 229, 280
Hpy188I	TCNGA	6 cut(s)	186, 350, 402, 501, 525, 531
Hpy188III	TCNNGA	4 cut(s)	310, 331, 418, 700
Hpy8I	GTNNAC	3 cut(s)	118, 229, 280
Hpy99I	CGWCG	4 cut(s)	10, 161, 173, 230
HpyAV	CCTTC	2 cut(s)	112, 370
HpyCH4III	ACNGT	5 cut(s)	133, 151, 169, 328, 430
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	3 cut(s)	449, 494, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	3 cut(s)	5, 42, 225
Hsp92II	CATG	4 cut(s)	76, 250, 421, 614
HspAI	GCGC	2 cut(s)	213, 634
KroI	GCCGGC	2 cut(s)	57, 215
KroNI	GCCGGC	2 cut(s)	59, 217
Ksp22I	TGATCA	2 cut(s)	627, 708
Kzo9I	GATC	2 cut(s)	627, 708
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	47, 88, 96
Lsp1109I	GCAGC	3 cut(s)	433, 506, 649
LweI	GCATC	1 cut(s)	673
MaeII	ACGT	1 cut(s)	5
MalI	GATC	2 cut(s)	629, 710
MboI	GATC	2 cut(s)	627, 708
MboII	GAAGA	6 cut(s)	28, 232, 383, 500, 583, 688
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	301, 703
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	137, 155, 263, 317, 382, 449, 552, 704
MroNI	GCCGGC	2 cut(s)	57, 215
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	5 cut(s)	45, 58, 86, 216, 296
MspR9I	CCNGG	2 cut(s)	86, 296
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	41, 161, 631
NaeI	GCCGGC	2 cut(s)	59, 217
NciI	CCSGG	2 cut(s)	86, 296
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	627, 708
NgoMIV	GCCGGC	2 cut(s)	57, 215
NlaIII	CATG	4 cut(s)	76, 250, 421, 614
PagI	TCATGA	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 165, 234, 240
PdiI	GCCGGC	2 cut(s)	59, 217
PfeI	GAWTC	2 cut(s)	526, 532
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	163, 448, 496, 664
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	99, 250, 479
RsaI	GTAC	2 cut(s)	381, 653
RsaNI	GTAC	2 cut(s)	380, 652
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	4 cut(s)	162, 447, 495, 663
Sau3AI	GATC	2 cut(s)	627, 708
Sau96I	GGNCC	3 cut(s)	99, 250, 479
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	86, 296
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	2 cut(s)	301, 703
SsiI	CCGC	4 cut(s)	55, 94, 162, 211
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	84, 294
StyI	CCWWGG	3 cut(s)	36, 72, 475
TaaI	ACNGT	5 cut(s)	133, 151, 169, 328, 430
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	8, 171, 228
TasI	AATT	2 cut(s)	301, 703
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	526, 532
TseI	GCWGC	3 cut(s)	446, 494, 662
TspDTI	ATGAA	2 cut(s)	94, 406
TspGWI	ACGGA	3 cut(s)	41, 170, 632
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	703
XmiI	GTMKAC	2 cut(s)	117, 228
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.