Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Forward (+)

63166993 .. 63168714

Gene Structure 1722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGTCCGGAAGGAAGATAACGCTGAAGAGCTCCGACGGCGAGTCGTTCGAGGTGGACGAGGCGGTGGCTTTGGAATCGCAGACCATCAAGCACATGATCGAGGACGATTGCGCCGACAATGGGATCCCTCTCCCCAACGTCACCAGCAAGATCTTGGCCAAGGTCATCGAGTACTGCAAGAAGCACGTCGACGCTGCGCCTAAGTCCGACGACCGCTCCTCCTCCTCCGGCGACGATGAGCTCAAGAACTGGGACGCCGACTTCGTCAAGGTCGACCAGGCCACCCTCTTCGATCTCATCCTGGCTGCAAACTATCTCAACATCAAGAACTTGCTCGACCTTACTTGCCAAACGGTGGCGGACATGATCAAGGGGAAAACACCTGAGGAGATTCGCAAGACATTCAACATCAAGAATGACTTTACACCAGAGGAAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

4.59

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 64	6.2e-32	Skp1 family, tetramerisation domain
Skp1	PF01466	110 - 157	2.1e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	2 cut(s)	192, 276
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	4 cut(s)	65, 217, 362, 451
AclWI	GGATC	2 cut(s)	121, 134
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	123, 358
AgsI	TTSAA	1 cut(s)	409
AhdI	GACNNNNNGTC	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	279, 303
AluBI	AGCT	2 cut(s)	33, 244
AluI	AGCT	2 cut(s)	33, 244
Alw21I	GWGCWC	2 cut(s)	35, 246
AlwI	GGATC	2 cut(s)	121, 134
Aor13HI	TCCGGA	1 cut(s)	8
AoxI	GGCC	2 cut(s)	159, 282
ApeKI	GCWGC	2 cut(s)	197, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	2 cut(s)	116, 202
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	126
BanII	GRGCYC	2 cut(s)	35, 246
Bbv12I	GWGCWC	2 cut(s)	35, 246
BbvI	GCAGC	2 cut(s)	184, 295
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	281, 305
BclI	TGATCA	1 cut(s)	369
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	198, 309
BlsI	GCNGC	2 cut(s)	199, 310
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	281, 305
Bme18I	GGWCC	1 cut(s)	448
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	281, 305
BmrI	ACTGGG	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 206, 233, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 358
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	281, 305
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	123, 358
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	6 cut(s)	211, 214, 217, 404, 455, 458
BseXI	GCAGC	2 cut(s)	184, 295
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	161, 284
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	35, 246
BsiSI	CCGG	2 cut(s)	9, 231
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	123, 358
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	161, 284
Bsp1286I	GDGCHC	2 cut(s)	35, 246
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	99, 126, 153, 295, 369
BspACI	CCGC	4 cut(s)	65, 217, 362, 451
BspANI	GGCC	2 cut(s)	161, 284
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BspQI	GCTCTTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	5 cut(s)	99, 126, 153, 295, 369
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	281, 305
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	3 cut(s)	23, 296, 432
BstACI	GRCGYC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	204, 387
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	116, 202
BstKTI	GATC	5 cut(s)	102, 129, 156, 298, 372
BstMBI	GATC	5 cut(s)	99, 126, 153, 295, 369
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	281, 305
BstSCI	CCNGG	2 cut(s)	279, 303
BstV1I	GCAGC	2 cut(s)	184, 295
BstX2I	RGATCY	2 cut(s)	126, 153
BstYI	RGATCY	2 cut(s)	126, 153
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	161, 284
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	116, 202
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	2 cut(s)	203, 266
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	97, 367
CviJI	RGCY	7 cut(s)	33, 71, 161, 244, 284, 308, 470
CviKI_1	RGCY	7 cut(s)	33, 71, 161, 244, 284, 308, 470
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	204, 387
DpnI	GATC	5 cut(s)	101, 128, 155, 297, 371
DpnII	GATC	5 cut(s)	99, 126, 153, 295, 369
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	23, 296, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	3 cut(s)	23, 296, 432
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	2 cut(s)	33, 244
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	35, 246
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	2 cut(s)	33, 244
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	387
EcoICRI	GAGCTC	2 cut(s)	33, 244
EcoRII	CCWGG	2 cut(s)	279, 303
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	35, 246
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	100, 370
FaiI	YATR	2 cut(s)	98, 368
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	96, 366
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	192, 276
Fnu4HI	GCNGC	2 cut(s)	198, 309
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	35, 246
Fsp4HI	GCNGC	2 cut(s)	198, 309
GlaI	GCGC	2 cut(s)	115, 201
GluI	GCNGC	2 cut(s)	198, 309
HaeIII	GGCC	2 cut(s)	161, 284
HapII	CCGG	2 cut(s)	9, 231
HgaI	GACGC	2 cut(s)	203, 266
HhaI	GCGC	2 cut(s)	116, 202
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	100, 370
Hin6I	GCGC	2 cut(s)	114, 200
HinP1I	GCGC	2 cut(s)	114, 200
HincII	GTYRAC	2 cut(s)	193, 277
HindII	GTYRAC	2 cut(s)	193, 277
HinfI	GANTC	3 cut(s)	44, 77, 394
HpaII	CCGG	2 cut(s)	9, 231
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	58, 193, 277
Hpy188I	TCNGA	2 cut(s)	37, 211
Hpy188III	TCNNGA	4 cut(s)	9, 247, 328, 415
Hpy8I	GTNNAC	3 cut(s)	58, 193, 277
Hpy99I	CGWCG	5 cut(s)	41, 194, 197, 215, 239
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	2 cut(s)	141, 189
HpyCH4V	TGCA	2 cut(s)	180, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	204, 387
HpySE526I	ACGT	2 cut(s)	141, 189
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	100, 370
HspAI	GCGC	2 cut(s)	114, 200
Kpn2I	TCCGGA	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	99, 126, 153, 295, 369
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	38, 224
Lsp1109I	GCAGC	2 cut(s)	184, 295
MaeII	ACGT	2 cut(s)	141, 189
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	101, 128, 155, 297, 371
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	99, 126, 153, 295, 369
MboII	GAAGA	4 cut(s)	28, 40, 283, 449
MflI	RGATCY	2 cut(s)	126, 153
MhlI	GDGCHC	2 cut(s)	35, 246
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	60, 234
Mox20I	TGGCCA	1 cut(s)	161
MroI	TCCGGA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	2 cut(s)	9, 231
MspR9I	CCNGG	2 cut(s)	281, 305
MvaI	CCWGG	2 cut(s)	281, 305
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	5 cut(s)	99, 126, 153, 295, 369
NlaIII	CATG	2 cut(s)	100, 370
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 114, 264, 273
PfeI	GAWTC	2 cut(s)	77, 394
PflFI	GACNNNGTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	199, 310
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp124BI	GAGCTC	2 cut(s)	35, 246
Psp6I	CCWGG	2 cut(s)	279, 303
PspGI	CCWGG	2 cut(s)	279, 303
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	126, 153
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	2 cut(s)	35, 246
SalI	GTCGAC	2 cut(s)	191, 275
SapI	GCTCTTC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	198, 309
Sau3AI	GATC	5 cut(s)	99, 126, 153, 295, 369
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	281, 305
SduI	GDGCHC	2 cut(s)	35, 246
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	4 cut(s)	65, 217, 362, 451
SstI	GAGCTC	2 cut(s)	35, 246
StyD4I	CCNGG	2 cut(s)	279, 303
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	2 cut(s)	144, 192
TaqI	TCGA	7 cut(s)	51, 102, 171, 192, 276, 294, 339
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	77, 394
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	197, 308
Tsp45I	GTSAC	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	192, 276
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.