Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2676422 .. 2677942

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCGTCCGGAAGGAAGATAACGCTGAAGAGCTCCGACGGCGAGTCGTTCGAGGTGGACGAGGAGGTGGCTTTGGAATCGCAGACCATCCGGCACATGATCGAGGACGATTGCGCCGACATTGAGATCCCTTTCCCCAGCAAGATCTTGGCTAAGGTCATCGAATACTGCAAGAAGCACATCGACGCTGCGCCTAAGTCCGACGACCGCTCCTCCTCCTCCTCCGGCGACGATGAGCTCAAGAACTGGGACGCCGACTTCGTCAAGGTCGACCAAGTCACCCTCTACGAGCTCATCACGGCTGCATACTCTTTGGACATCAAGAACTTGGTCGACCTTACTTGCCAGAGGGTGGCGGACATGATCAAGACGATAACTCCTGAGGATATTTGCAAGGCATACAACATCAAGACTGAATTTACACCAGAGGAAGAGGAAGAGGTCCGCAGGGAGAACCCATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.87

Weight (kDa)

4.45

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 60	1.4e-23	Skp1 family, tetramerisation domain
Skp1	PF01466	108 - 155	6.4e-22	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	2 cut(s)	270, 333
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	3 cut(s)	208, 356, 445
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	352
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	3 cut(s)	33, 238, 292
AluI	AGCT	3 cut(s)	33, 238, 292
Alw21I	GWGCWC	3 cut(s)	35, 240, 294
AlwI	GGATC	1 cut(s)	121
Aor13HI	TCCGGA	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	188, 302
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	2 cut(s)	116, 193
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	442
AxyI	CCTNAGG	1 cut(s)	381
BanII	GRGCYC	3 cut(s)	35, 240, 294
Bbv12I	GWGCWC	3 cut(s)	35, 240, 294
BbvI	GCAGC	2 cut(s)	175, 289
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	55, 315
BclI	TGATCA	1 cut(s)	363
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	2 cut(s)	189, 303
BlsI	GCNGC	2 cut(s)	190, 304
Bme18I	GGWCC	1 cut(s)	442
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	6 cut(s)	194, 197, 224, 227, 361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	5 cut(s)	77, 202, 205, 208, 211
BseXI	GCAGC	2 cut(s)	175, 289
BseYI	CCCAGC	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	3 cut(s)	35, 240, 294
BsiSI	CCGG	3 cut(s)	9, 91, 225
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	35, 240, 294
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	99, 126, 144, 363
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	3 cut(s)	208, 356, 445
BspCNI	CTCAG	1 cut(s)	373
BspEI	TCCGGA	1 cut(s)	8
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	4 cut(s)	99, 126, 144, 363
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	458
Bst6I	CTCTTC	3 cut(s)	23, 426, 432
BstACI	GRCGYC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	153, 195, 381
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	116, 193
BstKTI	GATC	4 cut(s)	102, 129, 147, 366
BstMBI	GATC	4 cut(s)	99, 126, 144, 363
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	175, 289
BstX2I	RGATCY	2 cut(s)	126, 144
BstYI	RGATCY	2 cut(s)	126, 144
Bsu36I	CCTNAGG	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	87
CfoI	GCGC	2 cut(s)	116, 193
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	2 cut(s)	194, 260
CviAII	CATG	3 cut(s)	97, 361, 459
CviJI	RGCY	7 cut(s)	33, 71, 152, 238, 292, 302, 464
CviKI_1	RGCY	7 cut(s)	33, 71, 152, 238, 292, 302, 464
DdeI	CTNAG	3 cut(s)	153, 195, 381
DpnI	GATC	4 cut(s)	101, 128, 146, 365
DpnII	GATC	4 cut(s)	99, 126, 144, 363
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	23, 426, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	3 cut(s)	23, 426, 432
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	3 cut(s)	33, 238, 292
Eco130I	CCWWGG	1 cut(s)	458
Eco24I	GRGCYC	3 cut(s)	35, 240, 294
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	3 cut(s)	33, 238, 292
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	381
EcoICRI	GAGCTC	3 cut(s)	33, 238, 292
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	3 cut(s)	35, 240, 294
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	3 cut(s)	100, 364, 462
FaiI	YATR	5 cut(s)	98, 307, 362, 400, 460
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	96, 360, 458
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	2 cut(s)	270, 333
Fnu4HI	GCNGC	2 cut(s)	189, 303
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	3 cut(s)	35, 240, 294
Fsp4HI	GCNGC	2 cut(s)	189, 303
GlaI	GCGC	2 cut(s)	115, 192
GluI	GCNGC	2 cut(s)	189, 303
GsaI	CCCAGC	1 cut(s)	141
HapII	CCGG	3 cut(s)	9, 91, 225
HgaI	GACGC	2 cut(s)	194, 260
HhaI	GCGC	2 cut(s)	116, 193
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	100, 364, 462
Hin6I	GCGC	2 cut(s)	114, 191
HinP1I	GCGC	2 cut(s)	114, 191
HincII	GTYRAC	2 cut(s)	271, 334
HindII	GTYRAC	2 cut(s)	271, 334
HinfI	GANTC	2 cut(s)	44, 77
HpaII	CCGG	3 cut(s)	9, 91, 225
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	58, 271, 334
Hpy188I	TCNGA	2 cut(s)	37, 202
Hpy188III	TCNNGA	6 cut(s)	9, 241, 322, 367, 380, 409
Hpy8I	GTNNAC	3 cut(s)	58, 271, 334
Hpy99I	CGWCG	4 cut(s)	41, 188, 206, 233
HpyAV	CCTTC	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	171, 305, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	153, 195, 381
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	100, 364, 462
HspAI	GCGC	2 cut(s)	114, 191
Kpn2I	TCCGGA	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	99, 126, 144, 363
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	38, 215
LpnPI	CCDG	9 cut(s)	22, 104, 151, 232, 238, 359, 393, 433, 438
Lsp1109I	GCAGC	2 cut(s)	175, 289
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	101, 128, 146, 365
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	4 cut(s)	99, 126, 144, 363
MboII	GAAGA	4 cut(s)	28, 40, 443, 449
MflI	RGATCY	2 cut(s)	126, 144
MhlI	GDGCHC	3 cut(s)	35, 240, 294
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	60, 225
MroI	TCCGGA	1 cut(s)	8
MspI	CCGG	3 cut(s)	9, 91, 225
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	4 cut(s)	99, 126, 144, 363
NlaIII	CATG	3 cut(s)	100, 364, 462
NmuCI	GTSAC	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 114, 258, 267
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	2 cut(s)	260, 275
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	190, 304
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp124BI	GAGCTC	3 cut(s)	35, 240, 294
PspFI	CCCAGC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	126, 144
PsyI	GACNNNGTC	2 cut(s)	260, 275
SacI	GAGCTC	3 cut(s)	35, 240, 294
SalI	GTCGAC	2 cut(s)	269, 332
SapI	GCTCTTC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	189, 303
Sau3AI	GATC	4 cut(s)	99, 126, 144, 363
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	3 cut(s)	35, 240, 294
SetI	ASST	9 cut(s)	35, 57, 69, 159, 240, 270, 294, 339, 444
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	208, 356, 445
SstI	GAGCTC	3 cut(s)	35, 240, 294
StyI	CCWWGG	1 cut(s)	458
TaqI	TCGA	6 cut(s)	51, 102, 162, 183, 270, 333
TasI	AATT	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	188, 302
Tsp45I	GTSAC	1 cut(s)	277
Tth111I	GACNNNGTC	2 cut(s)	260, 275
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	270, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.