Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Forward (+)

20073028 .. 20080384

Gene Structure 7357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3024 bp

ATGGATCCTAGTCGATATGGTCGTCAGCAAGAATGGGATAATAACAGTGCTCCGGAGGGTTATGGTACTCAGCATGATCCAAATCATCGGTTTGGCGTATCATATGATGACGGATATCCTGATGAAAGGTTGATGCGGGATGATGTCTACAACTATCCACCTGGACATAATACTCTGGGTGACTTGCCTCAATCTAGAAAGCGAAACTATGAAGAAAATTATCCCAGTGAACTTCGCAGGCAAGAAAAGCCTTACATCGATTCAAATTATGCTGCTGACTATTATCATGATAGTGAAGCTGGGAGTCGTAATGGACATTACCGTGATCATGAACACGAAAGGTCGTCCAGATATGATGGCTGCGATGACTATTCTTGTAATGATAACAACTATAGATCGAAAAATTACCATCATAGCAGAGATGATGGTCGTGAAAAAGATTATGATTATACTCGCCGAAGTTATGATTCTGAGTATGAAAGGGCCAGTGTGAGAGATGGCAGTCGAAAGAGCCGTGATCCGCAGGACAGAGAACGGAATTCTCGAGATAGAGAATGGGATTCACGTGATAGGGAGTGGGACAAAAGATGTTACAGCCGCGAAAGAGATGAGAGTCCTCATAAGAGATATGAGAAGTCACGATCTCGATCTACCGGACGTGGGGAGTTCTCTAGATCAAGATCTCCTAGAGGTCGGAGCCATGGGCGGAGTTACCGGGAGGACAGCTATGAGGGGGATCACTGGAATGAAAGTGAGAGGCGAAGAGAATATGAAGATAGACATAACCAGGATCATTTTTCTGCTACCCCATCCGCCACTGTTGTTGTGAAGGGTCTCTCTATGAAATCAACAGAAGAAGATCTATACCAGATTCTGGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTGGATGCCGCACGCACCATGATGGATAGAATTGAGCATGATGGTATAGTTTTGGATGGAAGGAAACTTATGTTCCATTACAGCCAACCTACTGGTAGGGCTGGTGTGTCCCGTAGGCAGGAACATGCTTCTAGACGCAGTTATGGTGGAAGTCGAAACATGATAGTTCCCACAGATTGGATCTGTACAATCTGTGGCTGTATCAATTTTGCGCGGCGAACCTCTTGCTTTCAGTGTAATGAACCAAAGACCAAGGATTCTCCTTCAGCGGATGTAGGTTTATCAAACTCTGCAGCAGGAAAACGAATTTCTGAGACAGGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGGATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCGGTTGAGGATGCTACTAAGGCACTTGAAGCAACAAACAGAACAGCTCTTGAAAGGAATGGTAAAATTCTTAGAGTTGCGTATGCAAAGAGTGTTCATGGTTCTGGAACTGGTATATCAGCACCCTCGCACTCCAACAACCTCGCTGCTGCTGCAATTGAAGCAGCAACGTTTTCTCAACAGTATGACGGTGTTGGATGGGCTCCAAAGGAATACAATACTGGTGAGAAACAAAACACTGGAGGGCAGGCCCAGGGTGTTGGGGAAATTGAATCCCAGAAAGGGACTTCTGCTCCACAGTCTGGCTATGTGTGGGATGAAGCATCTGGTTATTACTATGATGCGGCTTCTGGATACTACTACGATGGAAATTCAGGTCTCTATTATGACAGCAATAGTGGGCTTTGGTACTCGTATGACCAGCAAACACAACAATATGTTCCTTGTCCTGATCAGAACAATGAGAGTAAAGTAACAGAAAACCAACCAGACTCTGCCAAGAAGGAGAAATCCAGTCAACAAAAGGTTATTATCTCGGCGGCTACTACCCCTAATGTAGAAAAAGTTCTGTCCTTACCAGATGCGGTTCAGGCGGCTGCTGCAGCAGCAATTGCATCAGAGAAGAGAGAGAAAGAGAGAGTGAAAGAGATAAAACTTGCATCAAAGACTAGCCTACTCGCCAGCAAGAAAAAAATGAGTAACGTTTTAACAATGTGGAAGCAGCGGAGCCATGAAACCCAAATACAACGTCCCTCACCCTCACTTGGTGACAATCCACCTACAGTTTCGGCTGAAGCAAGGTCGTCTTTCTCCACTGGACAATCCATGGGCAAACTGAAATCTGATGTAATTATTGCGAAGGAGAGAAGTACCTCCAATCATGGAGTTTCTGCCCTGACAACTGCAGAAAGCTCGAGCAGCAGTACAACAGGAGGAACTTTGATGGGGGTGATGAGAGGTTCTTTTGGAGGAACTTTGGGTGGAGCTTCTTCTTCAGCTAGTGTACAAATGCCGCCAATATTACCTTCTGCTTCTCCAGCTTCGGTTTCAGTTTCTGGGAGTGGGAGAAGAAGGTTCTCTGAAACACCGACTGCAGGGCCTACTCATAGAGAACAGCCTCAGACATCATACCGGGACCGTGCTGCAGAAAGAAGAAACTTGTATGGCTCATCAACATCAAGTGGAAATGATGTTATTGATTCAAGTGAGGATTTAATGGGGTTGAGGAAAGGTTCATCGGATCCAACACCATTTCCTCCTGGTGTGGGTGGACGTGGGATTACAACAAGCACCGAAGTCAGTAGTTTCGATGTGATTACAGAAGAGAGAGCAATAGATGAGAGTAACGTGGGAAACAGAATGCTGAGGAACATGGGTTGGCACGAAGGATCGGGTTTGGGGAAAGACGGGAGCGGAATGAAAGAACCGGTGCAAGCGCAAGGCGTTGATAGGAGAGCAGGACTTGGGAGTCAGCAGAAGAAAGTTGATGCTGAGTTTGAGGTTCAGCCTGGTGACACTTACAGAACTCTTCTCCATAAGAAAGCACTTGCGAGATTTCGTGACATGTCTGACAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1007

Amino Acids

112.57

Weight (kDa)

6.9

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	230 - 300	1.1e-10	RNA recognition motif
RRM_1	PF00076	390 - 454	5.9e-16	RNA recognition motif
OCRE	PF17780	536 - 585	1.1e-18	OCRE domain
G-patch_2	PF12656	879 - 930	1.1e-06	G-patch domain
G-patch	PF01585	885 - 926	1.4e-14	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2910
AccB7I	CCANNNNNTGG	3 cut(s)	874, 1143, 1745
AccBSI	CCGCTC	1 cut(s)	2856
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	600, 1180
AccIII	TCCGGA	1 cut(s)	52
AclI	AACGTT	2 cut(s)	1613, 2145
AcsI	RAATTY	7 cut(s)	538, 922, 1272, 1352, 1400, 1509, 1813
AcuI	CTGAAG	3 cut(s)	1215, 2256, 2421
AcvI	CACGTG	1 cut(s)	566
AdeI	CACNNNGTG	1 cut(s)	2210
AfaI	GTAC	7 cut(s)	67, 1153, 1308, 1853, 2314, 2368, 2448
AflIII	ACRYGT	1 cut(s)	3006
AgeI	ACCGGT	1 cut(s)	2869
AgsI	TTSAA	6 cut(s)	264, 1472, 1496, 1604, 1715, 2646
AjiI	CACGTC	2 cut(s)	659, 2717
AjnI	CCWGG	6 cut(s)	160, 786, 1299, 1695, 2701, 2950
AjuI	GAANNNNNNNTTGG	2 cut(s)	2452, 2484
AluBI	AGCT	7 cut(s)	299, 726, 1490, 2355, 2429, 2441, 2483
AluI	AGCT	7 cut(s)	299, 726, 1490, 2355, 2429, 2441, 2483
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	4 cut(s)	839, 1274, 1389, 1826
AlwNI	CAGNNNCTG	3 cut(s)	874, 1937, 2498
Ama87I	CYCGRG	2 cut(s)	543, 2356
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	3 cut(s)	483, 1692, 2540
ApoI	RAATTY	7 cut(s)	538, 922, 1272, 1352, 1400, 1509, 1813
ArsI	GACNNNNNNTTYG	2 cut(s)	2176, 2208
AsiGI	ACCGGT	1 cut(s)	2869
Asp700I	GAANNNNTTC	2 cut(s)	1341, 2007
AspLEI	GCGC	2 cut(s)	1180, 2881
AspS9I	GGNCC	6 cut(s)	483, 887, 1286, 1693, 2540, 2578
AsuC2I	CCSGG	2 cut(s)	716, 2576
AsuHPI	GGTGA	6 cut(s)	191, 1679, 2190, 2222, 2404, 2966
AvaI	CYCGRG	2 cut(s)	543, 2356
AvaII	GGWCC	3 cut(s)	887, 1286, 2578
BamHI	GGATCC	2 cut(s)	4, 2683
BanII	GRGCYC	1 cut(s)	1648
BauI	CACGAG	2 cut(s)	936, 1416
BbrPI	CACGTG	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	2807
BceAI	ACGGC	1 cut(s)	498
BcgI	CGANNNNNNTGC	6 cut(s)	884, 918, 1173, 1207, 2337, 2371
BciT130I	CCWGG	6 cut(s)	162, 788, 1301, 1697, 2703, 2952
BciVI	GTATCC	1 cut(s)	1790
BclI	TGATCA	2 cut(s)	325, 1894
BcnI	CCSGG	2 cut(s)	716, 2576
BcoDI	GTCTC	4 cut(s)	839, 1274, 1389, 1826
BfaI	CTAG	7 cut(s)	9, 195, 672, 687, 1098, 2112, 2442
BfmI	CTRYAG	7 cut(s)	391, 1257, 2043, 2223, 2346, 2535, 2586
BfuI	GTATCC	1 cut(s)	1790
BglII	AGATCT	2 cut(s)	680, 859
Bme1390I	CCNGG	8 cut(s)	162, 716, 788, 1301, 1697, 2576, 2703, 2952
Bme18I	GGWCC	3 cut(s)	887, 1286, 2578
BmeT110I	CYCGRG	2 cut(s)	543, 2356
BmgBI	CACGTC	2 cut(s)	659, 2717
BmgT120I	GGNCC	6 cut(s)	483, 887, 1286, 1693, 2540, 2578
BmiI	GGNNCC	7 cut(s)	6, 698, 888, 1647, 2171, 2579, 2685
BmrFI	CCNGG	8 cut(s)	162, 716, 788, 1301, 1697, 2576, 2703, 2952
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	1704, 2463
Bpu10I	CCTNAGC	1 cut(s)	2807
BpuMI	CCSGG	2 cut(s)	716, 2576
Bsa29I	ATCGAT	1 cut(s)	258
BsaAI	YACGTR	2 cut(s)	566, 1310
BsaBI	GATNNNNATC	3 cut(s)	81, 646, 679
BsaI	GGTCTC	2 cut(s)	839, 1826
BsaJI	CCNNGG	6 cut(s)	700, 963, 1218, 1695, 1696, 2268
BsaWI	WCCGGW	3 cut(s)	52, 653, 2869
BsaXI	ACNNNNNCTCC	2 cut(s)	1720, 1750
Bse118I	RCCGGY	1 cut(s)	2869
Bse1I	ACTGG	9 cut(s)	225, 486, 746, 1063, 1558, 1669, 1687, 1956, 2263
Bse8I	GATNNNNATC	3 cut(s)	81, 646, 679
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	6 cut(s)	162, 788, 1301, 1697, 2703, 2952
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	6 cut(s)	700, 963, 1218, 1695, 1696, 2268
BseGI	GGATG	9 cut(s)	145, 809, 976, 1027, 1243, 1324, 1459, 1646, 1765
BseJI	GATNNNNATC	3 cut(s)	81, 646, 679
BseMII	CTCAG	6 cut(s)	83, 462, 1269, 2576, 2798, 2925
BseNI	ACTGG	9 cut(s)	225, 486, 746, 1063, 1558, 1669, 1687, 1956, 2263
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	600, 1180
BshFI	GGCC	3 cut(s)	485, 1694, 2542
BshTI	ACCGGT	1 cut(s)	2869
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	2 cut(s)	543, 2356
BsiSI	CCGG	5 cut(s)	53, 654, 715, 2575, 2870
BslFI	GGGAC	5 cut(s)	593, 1060, 1741, 2178, 2591
BsmAI	GTCTC	4 cut(s)	839, 1274, 1389, 1826
BsmFI	GGGAC	5 cut(s)	593, 1060, 1741, 2178, 2591
BsmI	GAATGC	2 cut(s)	1427, 2808
BsnI	GGCC	3 cut(s)	485, 1694, 2542
Bso31I	GGTCTC	2 cut(s)	839, 1826
BsoBI	CYCGRG	2 cut(s)	543, 2356
Bsp1286I	GDGCHC	2 cut(s)	52, 1648
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	2 cut(s)	1151, 2446
Bsp19I	CCATGG	2 cut(s)	700, 2268
BspANI	GGCC	3 cut(s)	485, 1694, 2542
BspCNI	CTCAG	6 cut(s)	82, 463, 1270, 2575, 2799, 2926
BspDI	ATCGAT	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	600, 1180
BspHI	TCATGA	2 cut(s)	286, 328
BspLI	GGNNCC	7 cut(s)	6, 698, 888, 1647, 2171, 2579, 2685
BspMAI	CTGCAG	5 cut(s)	1261, 2047, 2350, 2539, 2590
BspTNI	GGTCTC	2 cut(s)	839, 1826
BsrBI	CCGCTC	1 cut(s)	2856
BsrFI	RCCGGY	1 cut(s)	2869
BsrGI	TGTACA	2 cut(s)	1151, 2446
BsrI	ACTGG	9 cut(s)	225, 486, 746, 1063, 1558, 1669, 1687, 1956, 2263
BssAI	RCCGGY	1 cut(s)	2869
BssECI	CCNNGG	6 cut(s)	700, 963, 1218, 1695, 1696, 2268
BssSI	CACGAG	2 cut(s)	936, 1416
BssT1I	CCWWGG	3 cut(s)	700, 1218, 2268
Bst2BI	CACGAG	2 cut(s)	936, 1416
Bst2UI	CCWGG	6 cut(s)	162, 788, 1301, 1697, 2703, 2952
Bst4CI	ACNGT	9 cut(s)	47, 323, 820, 967, 1626, 1634, 1743, 2227, 2582
Bst6I	CTCTTC	4 cut(s)	757, 2060, 2760, 2976
BstAPI	GCANNNNNTGC	1 cut(s)	2054
BstAUI	TGTACA	2 cut(s)	1151, 2446
BstBAI	YACGTR	2 cut(s)	566, 1310
BstC8I	GCNNGC	5 cut(s)	239, 979, 1692, 2125, 2877
BstDEI	CTNAG	8 cut(s)	69, 471, 1278, 1461, 1514, 2562, 2807, 2934
BstDSI	CCRYGG	3 cut(s)	700, 963, 2268
BstF5I	GGATG	9 cut(s)	145, 809, 976, 1027, 1243, 1324, 1459, 1646, 1765
BstFNI	CGCG	2 cut(s)	600, 1180
BstHHI	GCGC	2 cut(s)	1180, 2881
BstMAI	GTCTC	4 cut(s)	839, 1274, 1389, 1826
BstNI	CCWGG	6 cut(s)	162, 788, 1301, 1697, 2703, 2952
BstNSI	RCATGY	3 cut(s)	1094, 1367, 3010
BstSCI	CCNGG	8 cut(s)	160, 714, 786, 1299, 1695, 2574, 2701, 2950
BstSFI	CTRYAG	7 cut(s)	391, 1257, 2043, 2223, 2346, 2535, 2586
BstUI	CGCG	2 cut(s)	600, 1180
BstX2I	RGATCY	6 cut(s)	4, 680, 859, 1146, 1378, 2683
BstXI	CCANNNNNNTGG	2 cut(s)	1058, 1703
BstYI	RGATCY	6 cut(s)	4, 680, 859, 1146, 1378, 2683
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	1790
BsuRI	GGCC	3 cut(s)	485, 1694, 2542
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	3 cut(s)	700, 963, 2268
BtgZI	GCGATG	1 cut(s)	378
BtrI	CACGTC	2 cut(s)	659, 2717
BtsCI	GGATG	9 cut(s)	145, 809, 976, 1027, 1243, 1324, 1459, 1646, 1765
BtsIMutI	CAGTG	8 cut(s)	52, 232, 493, 739, 816, 1205, 1680, 2256
Cac8I	GCNNGC	5 cut(s)	239, 979, 1692, 2125, 2877
CaiI	CAGNNNCTG	3 cut(s)	874, 1937, 2498
CciI	TCATGA	2 cut(s)	286, 328
CfoI	GCGC	2 cut(s)	1180, 2881
Cfr10I	RCCGGY	1 cut(s)	2869
Cfr13I	GGNCC	6 cut(s)	483, 887, 1286, 1693, 2540, 2578
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	1110
Csp6I	GTAC	7 cut(s)	66, 1152, 1307, 1852, 2313, 2367, 2447
CspAI	ACCGGT	1 cut(s)	2869
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviQI	GTAC	7 cut(s)	66, 1152, 1307, 1852, 2313, 2367, 2447
DdeI	CTNAG	8 cut(s)	69, 471, 1278, 1461, 1514, 2562, 2807, 2934
DraIII	CACNNNGTG	1 cut(s)	2210
DrdI	GACNNNNNNGTC	1 cut(s)	2910
DseDI	GACNNNNNNGTC	1 cut(s)	2910
Eam1104I	CTCTTC	4 cut(s)	757, 2060, 2760, 2976
EarI	CTCTTC	4 cut(s)	757, 2060, 2760, 2976
EciI	GGCGGA	2 cut(s)	721, 802
Eco130I	CCWWGG	3 cut(s)	700, 1218, 2268
Eco24I	GRGCYC	1 cut(s)	1648
Eco31I	GGTCTC	2 cut(s)	839, 1826
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	3 cut(s)	887, 1286, 2578
Eco57I	CTGAAG	3 cut(s)	1215, 2256, 2421
Eco72I	CACGTG	1 cut(s)	566
Eco88I	CYCGRG	2 cut(s)	543, 2356
EcoO109I	RGGNCCY	2 cut(s)	887, 2540
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	6 cut(s)	160, 786, 1299, 1695, 2701, 2950
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	3 cut(s)	700, 1218, 2268
EcoT38I	GRGCYC	1 cut(s)	1648
ErhI	CCWWGG	3 cut(s)	700, 1218, 2268
FalI	AAGNNNNNCTT	2 cut(s)	2233, 2265
FaqI	GGGAC	5 cut(s)	593, 1060, 1741, 2178, 2591
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	103
FbaI	TGATCA	2 cut(s)	325, 1894
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	9 cut(s)	152, 796, 983, 1034, 1250, 1331, 1466, 1653, 1772
FriOI	GRGCYC	1 cut(s)	1648
FspBI	CTAG	7 cut(s)	9, 195, 672, 687, 1098, 2112, 2442
GlaI	GCGC	2 cut(s)	1179, 2880
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	2 cut(s)	1704, 2463
HaeIII	GGCC	3 cut(s)	485, 1694, 2542
HapII	CCGG	5 cut(s)	53, 654, 715, 2575, 2870
HgaI	GACGC	1 cut(s)	1110
HhaI	GCGC	2 cut(s)	1180, 2881
Hin6I	GCGC	2 cut(s)	1178, 2879
HinP1I	GCGC	2 cut(s)	1178, 2879
HincII	GTYRAC	1 cut(s)	1961
HindII	GTYRAC	1 cut(s)	1961
HpaII	CCGG	5 cut(s)	53, 654, 715, 2575, 2870
HphI	GGTGA	6 cut(s)	191, 1679, 2190, 2222, 2404, 2966
Hpy166II	GTNNAC	5 cut(s)	148, 230, 1961, 2447, 2714
Hpy8I	GTNNAC	5 cut(s)	148, 230, 1961, 2447, 2714
HpyAV	CCTTC	8 cut(s)	823, 1020, 1239, 1939, 2296, 2478, 2508, 2822
HpyCH4III	ACNGT	9 cut(s)	47, 323, 820, 967, 1626, 1634, 1743, 2227, 2582
HpyCH4IV	ACGT	8 cut(s)	565, 658, 1309, 1613, 2145, 2191, 2716, 2790
HpyF3I	CTNAG	8 cut(s)	69, 471, 1278, 1461, 1514, 2562, 2807, 2934
HpySE526I	ACGT	8 cut(s)	565, 658, 1309, 1613, 2145, 2191, 2716, 2790
HspAI	GCGC	2 cut(s)	1178, 2879
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	2 cut(s)	325, 1894
LmnI	GCTCC	9 cut(s)	55, 696, 916, 1372, 1651, 1741, 2169, 2426, 2853
MaeI	CTAG	7 cut(s)	9, 195, 672, 687, 1098, 2112, 2442
MaeII	ACGT	8 cut(s)	565, 658, 1309, 1613, 2145, 2191, 2716, 2790
MbiI	CCGCTC	1 cut(s)	2856
MfeI	CAATTG	2 cut(s)	1599, 2052
MflI	RGATCY	6 cut(s)	4, 680, 859, 1146, 1378, 2683
MhlI	GDGCHC	2 cut(s)	52, 1648
MlyI	GAGTC	4 cut(s)	313, 622, 1928, 2920
MmeI	TCCRAC	6 cut(s)	674, 1296, 1313, 1602, 1618, 2711
MroI	TCCGGA	1 cut(s)	52
MroXI	GAANNNNTTC	2 cut(s)	1341, 2007
MseI	TTAA	2 cut(s)	2150, 2657
MslI	CAYNNNNRTG	5 cut(s)	291, 321, 744, 903, 986
MspA1I	CMGCKG	2 cut(s)	1235, 2167
MspI	CCGG	5 cut(s)	53, 654, 715, 2575, 2870
MspR9I	CCNGG	8 cut(s)	162, 716, 788, 1301, 1697, 2576, 2703, 2952
MunI	CAATTG	2 cut(s)	1599, 2052
Mva1269I	GAATGC	2 cut(s)	1427, 2808
MvaI	CCWGG	6 cut(s)	162, 788, 1301, 1697, 2703, 2952
MvnI	CGCG	2 cut(s)	600, 1180
NciI	CCSGG	2 cut(s)	716, 2576
NcoI	CCATGG	2 cut(s)	700, 2268
NdeI	CATATG	1 cut(s)	103
NlaIV	GGNNCC	7 cut(s)	6, 698, 888, 1647, 2171, 2579, 2685
NmeAIII	GCCGAG	1 cut(s)	1958
NmuCI	GTSAC	5 cut(s)	179, 636, 2210, 2954, 3002
NspI	RCATGY	3 cut(s)	1094, 1367, 3010
PaeR7I	CTCGAG	2 cut(s)	543, 2356
PagI	TCATGA	2 cut(s)	286, 328
PasI	CCCWGGG	1 cut(s)	1696
PciI	ACATGT	1 cut(s)	3006
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 511, 541
PctI	GAATGC	2 cut(s)	1427, 2808
PdmI	GAANNNNTTC	2 cut(s)	1341, 2007
PfeI	GAWTC	7 cut(s)	260, 467, 560, 871, 1223, 1715, 2642
PflMI	CCANNNNNTGG	3 cut(s)	874, 1143, 1745
PinAI	ACCGGT	1 cut(s)	2869
PleI	GAGTC	4 cut(s)	312, 621, 1928, 2919
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	4 cut(s)	312, 621, 1928, 2919
Ppu21I	YACGTR	2 cut(s)	566, 1310
PpuMI	RGGWCCY	1 cut(s)	887
PscI	ACATGT	1 cut(s)	3006
Psp1406I	AACGTT	2 cut(s)	1613, 2145
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	6 cut(s)	160, 786, 1299, 1695, 2701, 2950
PspCI	CACGTG	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	6 cut(s)	160, 786, 1299, 1695, 2701, 2950
PspN4I	GGNNCC	7 cut(s)	6, 698, 888, 1647, 2171, 2579, 2685
PspPI	GGNCC	6 cut(s)	483, 887, 1286, 1693, 2540, 2578
PspPPI	RGGWCCY	1 cut(s)	887
PspXI	VCTCGAGB	1 cut(s)	2356
PsrI	GAACNNNNNNTAC	2 cut(s)	1992, 2024
PstI	CTGCAG	5 cut(s)	1261, 2047, 2350, 2539, 2590
PstNI	CAGNNNCTG	3 cut(s)	874, 1937, 2498
PsuI	RGATCY	6 cut(s)	4, 680, 859, 1146, 1378, 2683
RsaI	GTAC	7 cut(s)	67, 1153, 1308, 1853, 2314, 2368, 2448
RsaNI	GTAC	7 cut(s)	66, 1152, 1307, 1852, 2313, 2367, 2447
RseI	CAYNNNNRTG	5 cut(s)	291, 321, 744, 903, 986
SaqAI	TTAA	2 cut(s)	2150, 2657
Sau96I	GGNCC	6 cut(s)	483, 887, 1286, 1693, 2540, 2578
SchI	GAGTC	4 cut(s)	313, 622, 1928, 2920
ScrFI	CCNGG	8 cut(s)	162, 716, 788, 1301, 1697, 2576, 2703, 2952
SduI	GDGCHC	2 cut(s)	52, 1648
SfcI	CTRYAG	7 cut(s)	391, 1257, 2043, 2223, 2346, 2535, 2586
Sfr274I	CTCGAG	2 cut(s)	543, 2356
SinI	GGWCC	3 cut(s)	887, 1286, 2578
SlaI	CTCGAG	2 cut(s)	543, 2356
SmiMI	CAYNNNNRTG	5 cut(s)	291, 321, 744, 903, 986
SmlI	CTYRAG	2 cut(s)	543, 2356
SmoI	CTYRAG	2 cut(s)	543, 2356
SspI	AATATT	1 cut(s)	2463
SspMI	CTAG	7 cut(s)	9, 195, 672, 687, 1098, 2112, 2442
StyD4I	CCNGG	8 cut(s)	160, 714, 786, 1299, 1695, 2574, 2701, 2950
StyI	CCWWGG	3 cut(s)	700, 1218, 2268
TaaI	ACNGT	9 cut(s)	47, 323, 820, 967, 1626, 1634, 1743, 2227, 2582
TaiI	ACGT	8 cut(s)	568, 661, 1312, 1616, 2148, 2194, 2719, 2793
TaqI	TCGA	9 cut(s)	13, 258, 398, 505, 544, 646, 1120, 2357, 2751
TatI	WGTACW	3 cut(s)	1151, 2366, 2446
TauI	GCSGC	7 cut(s)	600, 977, 1183, 1790, 1985, 2039, 2458
TfiI	GAWTC	7 cut(s)	260, 467, 560, 871, 1223, 1715, 2642
Tru1I	TTAA	2 cut(s)	2150, 2657
Tru9I	TTAA	2 cut(s)	2150, 2657
TscAI	CASTG	8 cut(s)	52, 232, 493, 746, 823, 1205, 1687, 2263
TseFI	GTSAC	5 cut(s)	179, 636, 2210, 2954, 3002
Tsp45I	GTSAC	5 cut(s)	179, 636, 2210, 2954, 3002
TspGWI	ACGGA	2 cut(s)	126, 550
TspRI	CASTG	8 cut(s)	52, 232, 493, 746, 823, 1205, 1687, 2263
Van91I	CCANNNNNTGG	3 cut(s)	874, 1143, 1745
VpaK11BI	GGWCC	3 cut(s)	887, 1286, 2578
XapI	RAATTY	7 cut(s)	538, 922, 1272, 1352, 1400, 1509, 1813
XbaI	TCTAGA	3 cut(s)	194, 671, 1097
XceI	RCATGY	3 cut(s)	1094, 1367, 3010
XhoI	CTCGAG	2 cut(s)	543, 2356
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	2 cut(s)	1341, 2007
XspI	CTAG	7 cut(s)	9, 195, 672, 687, 1098, 2112, 2442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.