Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016170.1

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Forward (+)

16432 .. 25946

Gene Structure 9515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016170.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3282 bp

atgggttcgagtcaccatgggggacgatctacggggaaaggtatccaaattctgagcgataccatcatcgggagctttgtctggttttgcttgaaagaaatggattccggtcgctatggtcttcagcaaggatgggataataacagcgctccggaggggtatggtgcagttcatgagccaaactttcgggtcggtggttcatatgatgagagaaggtttatagaggaagggtactcaagggacaatgtttatccaagaagcacattccaccgtgatgttctggatagggataactacccaccaccacctcatgctgttggtatatggccacattcaagaaggagaagttacgaagaagaatttcccattgatagggaacctaggagacatgagaaacagtacatggattcatatcatgagatggataacctccgtgatcatgagattgatacatttcaggaatttgataaattacgggatggctatcacagtgttgacagctatcgggatcctgggtttgagaggacttcaaggcttgggggacgtgatcgtgatgattatgcatatgatgattttgactataggtccggtattacccataagaccaggggggacagtcgtgaaagggattatgactatggtcggcatagttatgattctgattatgacagaagtagtaggagagagggcaattggaggcgtcgtgaatctcgtgaccgtgagcgtgacaagaaatgtttaagtagggaaagagaaatgagtccatatagaaggcatgagcgttctagatctcggtctcgatctcatggtcatgatgatcatcccagatcaaggtcacctagaagtcgaagccatggccgaagtcatcgagaggacagctatgatgatggaaggtatgagagaactgataagcgaagagacagggatgagaaacgccagagagagcattattctgtggccccatctgcaactattgttgtgaagggtctttcacagaagaccactgaggaagatctataccagatccttgctgaatggggacctcttcgtcatgtccgtgtgatcaaagaacgtaattccggcatttcccgtggatttgcttttattgatttcccttctgtgggggcagctcgtattatgatggacaaactcggggacaatgggcatgtggtggatggcaggaaactattttttgagtacagtagtaagccaactgggggtgcaggtggatcttttggtcaggacagtactgggaaatctggccatgctaaccataaaagcatcactgtcccatctgattggatgtgtatcagctgtggatatgttaattttgcacgaagaacatcctgctttcagtgtaatgaggcacgaactgaggatgctcctgcagcagatatttcttcatccaatcaattgacaggaaagaaaggatcagaggctggtcctactcatgttttggttgttcgtggactggatgaaaatgctgatgaggaaatgctgcgctatgaattttccaaacatgctcctatcaaggatctacgtcttgtcagagacaaattcactcatgtttcacggggatttgcgtttgtacacttccattcggtggaagatgctacgaaagctcttgaagcaacaaatggaacaccacttgaaaggaatgggcagattttaagagtagcatatgcaaaaagcattcttggtccaggatcaggcatgtcaggatcttcacagtcaagcagcctggcagctgctgcaattgaggcagcaacatttgctcaacagtatgatgctgttggatgggcaccaaaggaatataatccagacgacaaacaatccacgggagggaaggagcaaagtggcggggatttaaaagcagaaaaagatggtttggctccacaaactggttttgtatgggatgaggcatccggttactactatgatgcttcttccgggttctactatgatggaaatacaggtctctattatgatggtaacaatgggatttggtattcttatgatcaccaaactctgcagtacatcccttgcactgatcagaatggcatcaaagaatctgctaaccaatctcagctttcgaaggcatcagacggttcaagtaccaaaaaagtagtcatctctgcaccagctacaacctcagctgcatcattaccagatgcagtccaggctgctgcaacagcagcgatagctgcagagagaaaagaaaaggaaaagtccaaagagatcaagttggcatcaaagagcagtattttggctaacaagaagaaaatgagtaatgtattgaccatgtggaagcagaggagtcatgaagggcaagtaacccgtgtagctctagatgataaccagccaagtgcacctgctaatgatagactggtttcttctgttccatctacaaagacaaagtctaaaattgatgtaccaaccaaaaatgagaatactatatctagctcaggggttaccgccaatgtttctattgcagatactcgtggtttagagtcttcagtcatgccaaggcctgtgggcaacagtataggagggacactgatgggagtgataaggggatctggaagaactgtagtaaaatcagatacatccttttcagcatctggtggagtttccgcatcttcaacttctgctgcatgcatggcaggttcttctgcatcaacagattcggatatctccactgttttgacacccttcagaactgatgcatcggcactaggttcttatacaccacctgtggctgctgggagtggcaagagaagattctctgaaatgccagcttctgctcataaagaacctcatactggatacagggatcgtgcggctgaaaggaggagcttgtatggctcgtcatcttcttttggagatgatttgcctgaacatggttttggggagtcaaatcgagactcggcattgaggaagggttcttttgattcaatgcctttcccccctggtgttggtggaggacgtggcaccggagatgcaaccattgacagttacgaggttattacagccgacaaagcaattgatgagagcaatgtgggcaacaagatgcttcgcagcatgggctggcacgaaggcttgggtttaggaagagatgggagtggaatggtggaaccagtgcaggctcagagtgtggaaaggagagccggacttgggagtcagcagaagaagttagatccggctcttgaggctcaggctggagatagttataaaactctcattcacaagaaggcactggctaggttccgggagatgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1093

Amino Acids

120.68

Weight (kDa)

7.94

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3231
AarI	CACCTGC	2 cut(s)	1214, 2380
AasI	GACNNNNNNGTC	2 cut(s)	1047, 3177
Acc36I	ACCTGC	3 cut(s)	1214, 2380, 2654
AccB1I	GGYRCC	2 cut(s)	1801, 2990
AccB7I	CCANNNNNTGG	2 cut(s)	1603, 1901
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	4 cut(s)	1860, 2475, 2634, 2840
AcoI	YGGCCR	3 cut(s)	326, 856, 1261
AcsI	RAATTY	5 cut(s)	48, 359, 461, 1508, 1556
AcuI	CTGAAG	3 cut(s)	107, 2499, 2698
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	8 cut(s)	233, 401, 1199, 1249, 1590, 2036, 2116, 2433
AfeI	AGCGCT	1 cut(s)	148
AgsI	TTSAA	8 cut(s)	94, 336, 531, 1628, 1652, 2112, 2643, 2955
AhdI	GACNNNNNGTC	1 cut(s)	583
AjiI	CACGTC	2 cut(s)	545, 2987
AjnI	CCWGG	6 cut(s)	511, 605, 1702, 1740, 2178, 2968
AjuI	GAANNNNNNNTTGG	2 cut(s)	2889, 2921
Alw21I	GWGCWC	1 cut(s)	2371
Alw26I	GTCTC	6 cut(s)	379, 801, 912, 1545, 1982, 2916
Alw44I	GTGCAC	1 cut(s)	2367
AlwNI	CAGNNNCTG	4 cut(s)	1439, 1751, 2621, 2801
Ama87I	CYCGRG	1 cut(s)	1151
Aor13HI	TCCGGA	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	5 cut(s)	326, 856, 957, 1261, 2528
ApaLI	GTGCAC	1 cut(s)	2367
ApoI	RAATTY	5 cut(s)	48, 359, 461, 1508, 1556
ArsI	GACNNNNNNTTYG	4 cut(s)	2112, 2144, 2402, 2434
Asp700I	GAANNNNTTC	1 cut(s)	360
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	149, 1503
AspS9I	GGNCC	5 cut(s)	585, 958, 1040, 1442, 1700
AsuC2I	CCSGG	2 cut(s)	1951, 3269
AsuHPI	GGTGA	3 cut(s)	5, 828, 2012
AsuII	TTCGAA	1 cut(s)	2093
AvaI	CYCGRG	1 cut(s)	1151
AvaII	GGWCC	4 cut(s)	585, 1040, 1442, 1700
AvrII	CCTAGG	1 cut(s)	380
BaeGI	GKGCMC	2 cut(s)	1804, 2371
BalI	TGGCCA	2 cut(s)	328, 1263
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	2 cut(s)	1801, 2990
BauI	CACGAG	2 cut(s)	711, 2499
BbsI	GAAGAC	3 cut(s)	113, 1004, 2505
Bbv12I	GWGCWC	1 cut(s)	2371
BbvCI	CCTCAGC	1 cut(s)	2152
BciT130I	CCWGG	6 cut(s)	513, 607, 1704, 1742, 2180, 2970
BciVI	GTATCC	2 cut(s)	53, 2819
BclI	TGATCA	5 cut(s)	436, 817, 1062, 2017, 2050
BcnI	CCSGG	2 cut(s)	1951, 3269
BcoDI	GTCTC	6 cut(s)	379, 801, 912, 1545, 1982, 2916
BfaI	CTAG	7 cut(s)	381, 786, 840, 2348, 2460, 2735, 3261
BfmI	CTRYAG	5 cut(s)	580, 1386, 2030, 2205, 2589
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	3 cut(s)	1214, 2380, 2654
BfuI	GTATCC	2 cut(s)	53, 2819
BglII	AGATCT	2 cut(s)	788, 1012
BlnI	CCTAGG	1 cut(s)	380
BmcAI	AGTACT	1 cut(s)	1249
Bme1390I	CCNGG	8 cut(s)	513, 607, 1704, 1742, 1951, 2180, 2970, 3269
Bme18I	GGWCC	4 cut(s)	585, 1040, 1442, 1700
BmeRI	GACNNNNNGTC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	1151
BmgBI	CACGTC	2 cut(s)	545, 2987
BmgT120I	GGNCC	5 cut(s)	585, 958, 1040, 1442, 1700
BmiI	GGNNCC	9 cut(s)	378, 510, 960, 1041, 1803, 1893, 2992, 3135, 3266
BmrFI	CCNGG	8 cut(s)	513, 607, 1704, 1742, 1951, 2180, 2970, 3269
BmrI	ACTGGG	2 cut(s)	1224, 1260
BmuI	ACTGGG	2 cut(s)	1224, 1260
BoxI	GACNNNNGTC	1 cut(s)	639
BpiI	GAAGAC	3 cut(s)	113, 1004, 2505
BpmI	CTGGAG	1 cut(s)	3240
Bpu10I	CCTNAGC	3 cut(s)	2152, 2464, 3213
Bpu14I	TTCGAA	1 cut(s)	2093
BpuEI	CTTGAG	2 cut(s)	220, 3227
BpuMI	CCSGG	2 cut(s)	1951, 3269
BsaBI	GATNNNNATC	4 cut(s)	411, 483, 819, 1307
BsaHI	GRCGYC	1 cut(s)	700
BsaI	GGTCTC	2 cut(s)	801, 1982
BsaJI	CCNNGG	9 cut(s)	16, 380, 512, 606, 853, 1090, 1836, 2525, 2968
BsaWI	WCCGGW	5 cut(s)	107, 151, 587, 1925, 2993
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bse1I	ACTGG	8 cut(s)	1219, 1255, 1476, 1906, 2391, 2827, 3137, 3261
Bse3DI	GCAATG	1 cut(s)	3061
Bse8I	GATNNNNATC	4 cut(s)	411, 483, 819, 1307
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	6 cut(s)	513, 607, 1704, 1742, 2180, 2970
BseDI	CCNNGG	9 cut(s)	16, 380, 512, 606, 853, 1090, 1836, 2525, 2968
BseJI	GATNNNNATC	4 cut(s)	411, 483, 819, 1307
BseMI	GCAATG	1 cut(s)	3061
BseMII	CTCAG	8 cut(s)	44, 996, 1365, 2099, 2166, 2478, 3161, 3227
BseNI	ACTGG	8 cut(s)	1219, 1255, 1476, 1906, 2391, 2827, 3137, 3261
BseRI	GAGGAG	2 cut(s)	2329, 2866
BseSI	GKGCMC	2 cut(s)	1804, 2371
BseYI	CCCAGC	1 cut(s)	2762
BsgI	GTGCAG	4 cut(s)	186, 1242, 2121, 3161
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	5 cut(s)	328, 858, 959, 1263, 2530
BshNI	GGYRCC	2 cut(s)	1801, 2990
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	2371
BsiHKCI	CYCGRG	1 cut(s)	1151
BslFI	GGGAC	8 cut(s)	36, 254, 555, 626, 1053, 1169, 1274, 2566
BsmAI	GTCTC	6 cut(s)	379, 801, 912, 1545, 1982, 2916
BsmFI	GGGAC	8 cut(s)	36, 254, 555, 626, 1053, 1169, 1274, 2566
BsmI	GAATGC	1 cut(s)	1692
BsnI	GGCC	5 cut(s)	328, 858, 959, 1263, 2530
Bso31I	GGTCTC	2 cut(s)	801, 1982
BsoBI	CYCGRG	1 cut(s)	1151
Bsp119I	TTCGAA	1 cut(s)	2093
Bsp1286I	GDGCHC	2 cut(s)	1804, 2371
Bsp13I	TCCGGA	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	1588
Bsp19I	CCATGG	2 cut(s)	16, 853
BspACI	CCGC	4 cut(s)	1860, 2475, 2634, 2840
BspANI	GGCC	5 cut(s)	328, 858, 959, 1263, 2530
BspCNI	CTCAG	8 cut(s)	45, 997, 1366, 2098, 2165, 2477, 3160, 3226
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	5 cut(s)	172, 415, 439, 811, 2320
BspLI	GGNNCC	9 cut(s)	378, 510, 960, 1041, 1803, 1893, 2992, 3135, 3266
BspMAI	CTGCAG	3 cut(s)	1390, 2034, 2209
BspMI	ACCTGC	3 cut(s)	1214, 2380, 2654
BspT104I	TTCGAA	1 cut(s)	2093
BspT107I	GGYRCC	2 cut(s)	1801, 2990
BspTNI	GGTCTC	2 cut(s)	801, 1982
BsrDI	GCAATG	1 cut(s)	3061
BsrGI	TGTACA	1 cut(s)	1588
BsrI	ACTGG	8 cut(s)	1219, 1255, 1476, 1906, 2391, 2827, 3137, 3261
BssECI	CCNNGG	9 cut(s)	16, 380, 512, 606, 853, 1090, 1836, 2525, 2968
BssNI	GRCGYC	1 cut(s)	700
BssSI	CACGAG	2 cut(s)	711, 2499
BssT1I	CCWWGG	4 cut(s)	16, 380, 853, 2525
Bst2BI	CACGAG	2 cut(s)	711, 2499
Bst2UI	CCWGG	6 cut(s)	513, 607, 1704, 1742, 2180, 2970
Bst6I	CTCTTC	3 cut(s)	910, 1050, 3106
BstACI	GRCGYC	1 cut(s)	700
BstAPI	GCANNNNNTGC	2 cut(s)	1751, 1772
BstAUI	TGTACA	1 cut(s)	1588
BstBI	TTCGAA	1 cut(s)	2093
BstC8I	GCNNGC	4 cut(s)	2656, 2796, 3089, 3144
BstDEI	CTNAG	8 cut(s)	53, 1005, 1374, 2085, 2152, 2464, 3147, 3213
BstDSI	CCRYGG	4 cut(s)	16, 853, 1090, 1836
BstEII	GGTNACC	2 cut(s)	834, 2470
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 1503
BstMAI	GTCTC	6 cut(s)	379, 801, 912, 1545, 1982, 2916
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	6 cut(s)	513, 607, 1704, 1742, 2180, 2970
BstNSI	RCATGY	4 cut(s)	1169, 1523, 1717, 2658
BstPAI	GACNNNNGTC	1 cut(s)	639
BstPI	GGTNACC	2 cut(s)	834, 2470
BstSCI	CCNGG	8 cut(s)	511, 605, 1702, 1740, 1949, 2178, 2968, 3267
BstSFI	CTRYAG	5 cut(s)	580, 1386, 2030, 2205, 2589
BstSLI	GKGCMC	2 cut(s)	1804, 2371
BstV2I	GAAGAC	3 cut(s)	113, 1004, 2505
BstX2I	RGATCY	9 cut(s)	508, 788, 1012, 1023, 1229, 1534, 1721, 2576, 3196
BstXI	CCANNNNNNTGG	1 cut(s)	1299
BstYI	RGATCY	9 cut(s)	508, 788, 1012, 1023, 1229, 1534, 1721, 2576, 3196
BsuI	GTATCC	2 cut(s)	53, 2819
BsuRI	GGCC	5 cut(s)	328, 858, 959, 1263, 2530
BtgI	CCRYGG	4 cut(s)	16, 853, 1090, 1836
BtrI	CACGTC	2 cut(s)	545, 2987
BtsIMutI	CAGTG	9 cut(s)	496, 1002, 1284, 1361, 2046, 2555, 2697, 3144, 3254
BveI	ACCTGC	3 cut(s)	1214, 2380, 2654
Cac8I	GCNNGC	4 cut(s)	2656, 2796, 3089, 3144
CaiI	CAGNNNCTG	4 cut(s)	1439, 1751, 2621, 2801
CciI	TCATGA	5 cut(s)	172, 415, 439, 811, 2320
CfoI	GCGC	2 cut(s)	149, 1503
Cfr13I	GGNCC	5 cut(s)	585, 958, 1040, 1442, 1700
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	8 cut(s)	232, 400, 1198, 1248, 1589, 2035, 2115, 2432
CspCI	CAANNNNNGTGG	2 cut(s)	2514, 2549
CviQI	GTAC	8 cut(s)	232, 400, 1198, 1248, 1589, 2035, 2115, 2432
DdeI	CTNAG	8 cut(s)	53, 1005, 1374, 2085, 2152, 2464, 3147, 3213
DraI	TTTAAA	1 cut(s)	1869
DrdI	GACNNNNNNGTC	2 cut(s)	1047, 3177
DriI	GACNNNNNGTC	1 cut(s)	583
DseDI	GACNNNNNNGTC	2 cut(s)	1047, 3177
EaeI	YGGCCR	3 cut(s)	326, 856, 1261
Eam1104I	CTCTTC	3 cut(s)	910, 1050, 3106
Eam1105I	GACNNNNNGTC	1 cut(s)	583
EarI	CTCTTC	3 cut(s)	910, 1050, 3106
Eco130I	CCWWGG	4 cut(s)	16, 380, 853, 2525
Eco147I	AGGCCT	1 cut(s)	2530
Eco31I	GGTCTC	2 cut(s)	801, 1982
Eco32I	GATATC	1 cut(s)	2692
Eco47I	GGWCC	4 cut(s)	585, 1040, 1442, 1700
Eco47III	AGCGCT	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	107, 2499, 2698
Eco88I	CYCGRG	1 cut(s)	1151
Eco91I	GGTNACC	2 cut(s)	834, 2470
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	2 cut(s)	834, 2470
EcoRII	CCWGG	6 cut(s)	511, 605, 1702, 1740, 2178, 2968
EcoRV	GATATC	1 cut(s)	2692
EcoT14I	CCWWGG	4 cut(s)	16, 380, 853, 2525
EcoT22I	ATGCAT	3 cut(s)	565, 2660, 2728
ErhI	CCWWGG	4 cut(s)	16, 380, 853, 2525
FaqI	GGGAC	8 cut(s)	36, 254, 555, 626, 1053, 1169, 1274, 2566
FauI	CCCGC	1 cut(s)	1853
FauNDI	CATATG	3 cut(s)	202, 565, 1681
FbaI	TGATCA	5 cut(s)	436, 817, 1062, 2017, 2050
FspBI	CTAG	7 cut(s)	381, 786, 840, 2348, 2460, 2735, 3261
GlaI	GCGC	2 cut(s)	148, 1502
GsaI	CCCAGC	1 cut(s)	2766
GsuI	CTGGAG	1 cut(s)	3240
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	328, 858, 959, 1263, 2530
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	2 cut(s)	149, 1503
Hin1I	GRCGYC	1 cut(s)	700
Hin6I	GCGC	2 cut(s)	147, 1501
HinP1I	GCGC	2 cut(s)	147, 1501
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HphI	GGTGA	3 cut(s)	5, 828, 2012
Hpy166II	GTNNAC	4 cut(s)	496, 1469, 1591, 2369
Hpy8I	GTNNAC	4 cut(s)	496, 1469, 1591, 2369
Hpy99I	CGWCG	1 cut(s)	705
HpyCH4IV	ACGT	4 cut(s)	544, 1072, 1540, 2986
HpyF3I	CTNAG	8 cut(s)	53, 1005, 1374, 2085, 2152, 2464, 3147, 3213
HpySE526I	ACGT	4 cut(s)	544, 1072, 1540, 2986
Hsp92I	GRCGYC	1 cut(s)	700
HspAI	GCGC	2 cut(s)	147, 1501
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	5 cut(s)	436, 817, 1062, 2017, 2050
LmnI	GCTCC	7 cut(s)	72, 154, 1387, 1528, 1849, 1897, 2853
MaeI	CTAG	7 cut(s)	381, 786, 840, 2348, 2460, 2735, 3261
MaeII	ACGT	4 cut(s)	544, 1072, 1540, 2986
MfeI	CAATTG	4 cut(s)	691, 1412, 1755, 3042
MflI	RGATCY	9 cut(s)	508, 788, 1012, 1023, 1229, 1534, 1721, 2576, 3196
MhlI	GDGCHC	2 cut(s)	1804, 2371
MlsI	TGGCCA	2 cut(s)	328, 1263
MluNI	TGGCCA	2 cut(s)	328, 1263
MlyI	GAGTC	7 cut(s)	19, 769, 2326, 2519, 2918, 2921, 3187
MmeI	TCCRAC	1 cut(s)	1774
Mox20I	TGGCCA	2 cut(s)	328, 1263
Mph1103I	ATGCAT	3 cut(s)	565, 2660, 2728
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	2 cut(s)	328, 1263
MseI	TTAA	4 cut(s)	740, 1326, 1670, 1868
MslI	CAYNNNNRTG	4 cut(s)	273, 651, 810, 1056
Msp20I	TGGCCA	2 cut(s)	328, 1263
MspA1I	CMGCKG	3 cut(s)	1314, 1748, 2156
MspR9I	CCNGG	8 cut(s)	513, 607, 1704, 1742, 1951, 2180, 2970, 3269
MunI	CAATTG	4 cut(s)	691, 1412, 1755, 3042
Mva1269I	GAATGC	1 cut(s)	1692
MvaI	CCWGG	6 cut(s)	513, 607, 1704, 1742, 2180, 2970
NciI	CCSGG	2 cut(s)	1951, 3269
NcoI	CCATGG	2 cut(s)	16, 853
NdeI	CATATG	3 cut(s)	202, 565, 1681
NlaIV	GGNNCC	9 cut(s)	378, 510, 960, 1041, 1803, 1893, 2992, 3135, 3266
NmeAIII	GCCGAG	1 cut(s)	2906
NmuCI	GTSAC	4 cut(s)	11, 713, 725, 834
NsiI	ATGCAT	3 cut(s)	565, 2660, 2728
NspI	RCATGY	4 cut(s)	1169, 1523, 1717, 2658
NspV	TTCGAA	1 cut(s)	2093
PaeI	GCATGC	1 cut(s)	2658
PagI	TCATGA	5 cut(s)	172, 415, 439, 811, 2320
PaqCI	CACCTGC	2 cut(s)	1214, 2380
PceI	AGGCCT	1 cut(s)	2530
PcsI	WCGNNNNNNNCGW	2 cut(s)	709, 1054
PctI	GAATGC	1 cut(s)	1692
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	8 cut(s)	104, 407, 656, 707, 2069, 2684, 2781, 2951
PflFI	GACNNNGTC	1 cut(s)	2416
PflMI	CCANNNNNTGG	2 cut(s)	1603, 1901
PfoI	TCCNGGA	2 cut(s)	1702, 3267
PleI	GAGTC	7 cut(s)	18, 768, 2325, 2518, 2918, 2920, 3186
PpsI	GAGTC	7 cut(s)	18, 768, 2325, 2518, 2918, 2920, 3186
PpuMI	RGGWCCY	1 cut(s)	1040
PshAI	GACNNNNGTC	1 cut(s)	639
PsiI	TTATAA	1 cut(s)	3231
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	6 cut(s)	511, 605, 1702, 1740, 2178, 2968
PspEI	GGTNACC	2 cut(s)	834, 2470
PspFI	CCCAGC	1 cut(s)	2762
PspGI	CCWGG	6 cut(s)	511, 605, 1702, 1740, 2178, 2968
PspN4I	GGNNCC	9 cut(s)	378, 510, 960, 1041, 1803, 1893, 2992, 3135, 3266
PspPI	GGNCC	5 cut(s)	585, 958, 1040, 1442, 1700
PspPPI	RGGWCCY	1 cut(s)	1040
PstI	CTGCAG	3 cut(s)	1390, 2034, 2209
PstNI	CAGNNNCTG	4 cut(s)	1439, 1751, 2621, 2801
PsuI	RGATCY	9 cut(s)	508, 788, 1012, 1023, 1229, 1534, 1721, 2576, 3196
PsyI	GACNNNGTC	1 cut(s)	2416
PvuII	CAGCTG	3 cut(s)	1314, 1748, 2156
RsaI	GTAC	8 cut(s)	233, 401, 1199, 1249, 1590, 2036, 2116, 2433
RsaNI	GTAC	8 cut(s)	232, 400, 1198, 1248, 1589, 2035, 2115, 2432
RseI	CAYNNNNRTG	4 cut(s)	273, 651, 810, 1056
SaqAI	TTAA	4 cut(s)	740, 1326, 1670, 1868
Sau96I	GGNCC	5 cut(s)	585, 958, 1040, 1442, 1700
ScaI	AGTACT	1 cut(s)	1249
SchI	GAGTC	7 cut(s)	19, 769, 2326, 2519, 2918, 2921, 3187
ScrFI	CCNGG	8 cut(s)	513, 607, 1704, 1742, 1951, 2180, 2970, 3269
SduI	GDGCHC	2 cut(s)	1804, 2371
SfcI	CTRYAG	5 cut(s)	580, 1386, 2030, 2205, 2589
SfuI	TTCGAA	1 cut(s)	2093
SinI	GGWCC	4 cut(s)	585, 1040, 1442, 1700
SmiMI	CAYNNNNRTG	4 cut(s)	273, 651, 810, 1056
SmlI	CTYRAG	2 cut(s)	235, 3206
SmoI	CTYRAG	2 cut(s)	235, 3206
SphI	GCATGC	1 cut(s)	2658
SseBI	AGGCCT	1 cut(s)	2530
SsiI	CCGC	4 cut(s)	1860, 2475, 2634, 2840
SspMI	CTAG	7 cut(s)	381, 786, 840, 2348, 2460, 2735, 3261
StuI	AGGCCT	1 cut(s)	2530
StyD4I	CCNGG	8 cut(s)	511, 605, 1702, 1740, 1949, 2178, 2968, 3267
StyI	CCWWGG	4 cut(s)	16, 380, 853, 2525
TaiI	ACGT	4 cut(s)	547, 1075, 1543, 2989
TaqI	TCGA	6 cut(s)	8, 799, 847, 868, 2093, 2920
TaqII	GACCGA	1 cut(s)	783
TatI	WGTACW	5 cut(s)	399, 1197, 1247, 1588, 2034
TauI	GCSGC	1 cut(s)	2843
TfiI	GAWTC	8 cut(s)	104, 407, 656, 707, 2069, 2684, 2781, 2951
Tru1I	TTAA	4 cut(s)	740, 1326, 1670, 1868
Tru9I	TTAA	4 cut(s)	740, 1326, 1670, 1868
TscAI	CASTG	9 cut(s)	496, 1009, 1291, 1361, 2053, 2562, 2704, 3144, 3261
TseFI	GTSAC	4 cut(s)	11, 713, 725, 834
Tsp45I	GTSAC	4 cut(s)	11, 713, 725, 834
TspDTI	ATGAA	7 cut(s)	161, 189, 399, 1392, 1491, 1521, 2337
TspGWI	ACGGA	2 cut(s)	422, 1046
TspRI	CASTG	9 cut(s)	496, 1009, 1291, 1361, 2053, 2562, 2704, 3144, 3261
Tth111I	GACNNNGTC	1 cut(s)	2416
Van91I	CCANNNNNTGG	2 cut(s)	1603, 1901
VneI	GTGCAC	1 cut(s)	2367
VpaK11BI	GGWCC	4 cut(s)	585, 1040, 1442, 1700
XapI	RAATTY	5 cut(s)	48, 359, 461, 1508, 1556
XbaI	TCTAGA	2 cut(s)	785, 2347
XceI	RCATGY	4 cut(s)	1169, 1523, 1717, 2658
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	7 cut(s)	381, 786, 840, 2348, 2460, 2735, 3261
ZrmI	AGTACT	1 cut(s)	1249
Zsp2I	ATGCAT	3 cut(s)	565, 2660, 2728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.