Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Forward (+)

13141010 .. 13143879

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0081100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCGGCTAGGGCGAACGACTTTCAGGATCGCCGAAATTTGAAGCTCGATAACCTTCACGACATCATCTACCTCAAGCCGGCCCAGCACCGCCCGCCTACCGCCGCGACCACAGTCACCTCTGAACCTGTGGCAGAAGCCTCCACGCTCAACGTCGGCGCCGCCTCCTCTTTCAACCATGAAGTCGAGGAAGACGCCAGCTTGGATCGAACAGACGACGTCGTTTACCGAGCAGGATGGAGTTGTTGCCTCTTGGAACTTCCAGCTCCGCCATTGTTCGCCGTGGCCGCTGTAGTTGTCGTCGACGAAGGTCTCAAGGACGAAGAAGCCATCGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

113

Amino Acids

12.31

Weight (kDa)

4.42

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	107
AciI	CCGC	8 cut(s)	5, 91, 95, 102, 105, 162, 269, 288
AclWI	GGATC	2 cut(s)	36, 213
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	3 cut(s)	159, 195, 219
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	43, 175
AluBI	AGCT	3 cut(s)	46, 201, 266
AluI	AGCT	3 cut(s)	46, 201, 266
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	36, 213
AoxI	GGCC	2 cut(s)	81, 285
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	2 cut(s)	231, 338
BceAI	ACGGC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	162
BisI	GCNGC	4 cut(s)	6, 105, 162, 288
BlsI	GCNGC	4 cut(s)	7, 106, 163, 289
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	160
BoxI	GACNNNNGTC	2 cut(s)	113, 309
BpiI	GAAGAC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	59, 299
Bsa29I	ATCGAT	1 cut(s)	333
BsaHI	GRCGYC	3 cut(s)	159, 195, 219
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	83, 287
BshNI	GGYRCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	83, 287
Bso31I	GGTCTC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	28, 205
BspACI	CCGC	8 cut(s)	5, 91, 95, 102, 105, 162, 269, 288
BspANI	GGCC	2 cut(s)	83, 287
BspDI	ATCGAT	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	36, 213
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	28, 205
BssNI	GRCGYC	3 cut(s)	159, 195, 219
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	3 cut(s)	159, 195, 219
BstC8I	GCNNGC	3 cut(s)	81, 95, 199
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	31, 208
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	28, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 85, 94, 287
BstPAI	GACNNNNGTC	2 cut(s)	113, 309
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	83, 287
BsuTUI	ATCGAT	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	81, 95, 199
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	9 cut(s)	8, 46, 79, 83, 140, 201, 266, 287, 329
CviKI_1	RGCY	9 cut(s)	8, 46, 79, 83, 140, 201, 266, 287, 329
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	2 cut(s)	30, 207
DpnII	GATC	2 cut(s)	28, 205
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	317
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
FaeI	CATG	1 cut(s)	182
FaiI	YATR	1 cut(s)	180
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	6, 105, 162, 288
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	6, 105, 162, 288
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	6, 105, 162, 288
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	83, 287
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	3 cut(s)	159, 195, 219
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	226, 304
Hpy188I	TCNGA	2 cut(s)	124, 341
Hpy188III	TCNNGA	2 cut(s)	26, 59
Hpy8I	GTNNAC	2 cut(s)	226, 304
Hpy99I	CGWCG	5 cut(s)	158, 221, 224, 305, 308
HpyAV	CCTTC	2 cut(s)	65, 302
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	153, 219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 85, 94, 287
HpySE526I	ACGT	2 cut(s)	153, 219
Hsp92I	GRCGYC	3 cut(s)	159, 195, 219
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	159
KasI	GGCGCC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	28, 205
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	11, 93, 98, 141, 211, 219, 276
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	153, 219
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	30, 207
MboI	GATC	2 cut(s)	28, 205
MboII	GAAGA	2 cut(s)	203, 335
MluCI	AATT	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	83, 130, 151, 175, 178, 181, 260
MroNI	GCCGGC	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	11, 85, 94, 287
NaeI	GCCGGC	1 cut(s)	81
NarI	GGCGCC	1 cut(s)	159
NdeII	GATC	2 cut(s)	28, 205
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	7, 106, 163, 289
PluTI	GGCGCC	1 cut(s)	162
PshAI	GACNNNNGTC	2 cut(s)	113, 309
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	302
SatI	GCNGC	4 cut(s)	6, 105, 162, 288
Sau3AI	GATC	2 cut(s)	28, 205
Sau96I	GGNCC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	291
SfoI	GGCGCC	1 cut(s)	160
SgrDI	CGTCGACG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	74, 314
SmoI	CTYRAG	2 cut(s)	74, 314
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	8 cut(s)	5, 91, 95, 102, 105, 162, 269, 288
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	156, 222
TaqI	TCGA	5 cut(s)	48, 186, 208, 303, 333
TasI	AATT	1 cut(s)	37
TauI	GCSGC	4 cut(s)	8, 107, 164, 290
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	1 cut(s)	9
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.