Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Reverse (-)

19325495 .. 19334284

Gene Structure 8790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGGATTCATATCATGAGATGGATAACCTCCGTGATCATGAGATTGATACATTTCAGGAATTTGATAAATTACGGGATGGCTATCACAGTGTTGACAGCTATCGGGATCCTGGGTTTGAGAGGACTTCAAGGCTTGGGGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTATAGGTCCGGTATTACCCATAAGACCAGGGGGGACAGTCGTGAAAGGGATTATGACTATGGTCGGCATAGTTATGATTCTGATTATGACAGAGGTAGTAGGAGAGAGGGCAATTGGAGGCGTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTTTAAGTAGGGAAGGAGAAATGAGTCCATATAGAAGGCATGAGCGTTCTAGATCTCGGTCTCGATCTCATGGGCATGATGATCATCCCAGATCAAGGTCACCTAGAAGTCGAAGCCATGGCCGAAGTCATCGAGAGGACAGCTATGATGATGGAAGGTATGAGAGAACTGATAAGCGAAGAGACAGGGATGAGAAACACCAGAGAGAGCATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACCACTGAGGAAGATCTATACCAGATCCTTGCTGAATGGGGACCTCTTCGTCATGTCCGTGTGATCAAAGAACGTAATTCCGGCATTTCCCGTGGATTTGCTTTTATTGATTTCCCTTCCGTGGGAGCAGCTCGTATTATGATGGACAAACTCGGGGACAATGGGCATGTGGTGGATGGCAGGAAACTATTTTTTGAGTACAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGAAAGTACTGGGAAATCTGGCCATGCTAACCATAAAAGCATCACTGTGCCATCTGATTGGATGTGTATCAGCTGTGGATATGTTAATTTTGCACGAAGAACATCCTGCTTTCAGTGTAATGAGGCACGAACTGAGGATGCTCCCGCAGCAGATATTTCTTCATCCAATCAAATGACAGGAAAGAAAGGATCAGAGGCTGGTCCTACTCATGTTTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAATTTTCCAAACATGCTCCTATCAAGGATCTACGTCTTGTCAGAGACAAATTCACTCATGTTTCACGGGGATTTGCGTTTGTACACTTCCATTCGGTGGAAGATGCTACGAAAGCTCTTGAAGCAACAAATGGAACACCACTTGAAAGGAATGGGCAGATTTTAAGAGTAGCATATGCAAAAAGCATTCTTGGTCCAGGATCAGGCATGTCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAGGAATATAATCCAGACGACAAACAATCCACGGGAGGGAAGGAGCAAAGTGGTGGGGATTTAAAAGCAGAAAAAGATGGTTTGGCTCCACAAACTGGTTTTGTATGGGATGAGGCATCCGGTTACTACTATGATGCTTCTTCCGGGTTCTACTATGATGGAAATACAGGTCTCTATTATGATGGTAACAATGGGATTTGGTATTCTTATGATCACCAAACTCTGCAGTACATCCCTTGCACTGATCAGAATGGCATCAAAGAATCTGCTAACCAATCTCAGCTTTCGAAGGCATCAGACGGTTCAAGTATCAAAAAAGTAGTCATCTCTGCACCAGCTACAACCTCAGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAACAGCAGCGATAGCTGCAGAGAGAAAAGAAAAGGAAAAGTCCAAAGAGATCAAGTTGGCATCAAAGAGCAGTATTTTGGCTAACAAGAAGAAAATGAGTAATGTATTGACTATGTGGAAGCAGAGGAGTCATGAAGGGCAAGTAACCCGTGTAGCTCTAGATGATAACCAGCCAAGTGCACCTGCTAATGATAGACTAGTTTCTTCTGTTCCATCTACAAAGACAAAGTCTAAAATTGATGTACCAACCAAAAATGAGAATACTATATCTAGCTCAGGGGCTACCGCCAATGTTTCTACTGCAGATACTCTTGGTTTAGAGTCTTCAGTCATGCCAAGGCCTGTGGGCAACAGTATAGGAGGGACACTGATGGGAGTGATAAGGGGATCTGGAAGAACTGTAGTAAAATCAGATACATCCTTTTCAGCATCTGGTGGAGTTTCCGCACCTTCAACTTCTGCTGCATGCATAGCAGGTTCTTCTGCATCAACAGATTCGGATATCTCCACTGTTTTGACACCCTTCAGAACTGATGCATCGGCACTAGGTTCTTATACACCACCTGTGGCTGCTGGGAGTGGCAAGAGAAGATTCTCTGAAATGCCAGCTTCTGCTCATAAAGAACCTCATACTGGATACAGGGATCGTGCGGCTGAAAGGAGGAGCTTGTATGGCTCGTCATCTTCTTTTGGAGATGATTTGCCTGAACATGGTTTTGGGGAGTCAAATCGAGACTCGGCATTGAGGAAGGGTTCTTTTGATTCAATGCCTTTCCCCCCTGGTGTTGGTGGAGGACGTGGGACCGGAGATGCAACCATTGACAGTTACGAGGTTATTACAGCCGACAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAGCATGGGCTGGCACGAAGGCTTGGGTTTAGGAAGAGATGGGAGTGGAATGGTGGAACCCGTGCAGGCTCAGAGTGTGGAAAGGAGAGCCGGACTTGGGAGTCAGCAGAAGAAGTTAGATCCGGCTCTTGAGGCTCAGGCTGGAGATAGTTATAAAACTCTCATTCACAAGAAGGCACTGGCTAGGTTCCGGGAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

959

Amino Acids

104.91

Weight (kDa)

7.69

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	191 - 261	1.5e-11	RNA recognition motif
RRM_1	PF00076	352 - 417	2.4e-17	RNA recognition motif
OCRE	PF17780	499 - 547	1.6e-17	OCRE domain
G-patch	PF01585	884 - 925	3.2e-14	G-patch domain
G-patch_2	PF12656	884 - 929	1.3e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2829
AarI	CACCTGC	2 cut(s)	812, 1978
AasI	GACNNNNNNGTC	2 cut(s)	645, 2775
Acc36I	ACCTGC	3 cut(s)	812, 1978, 2252
AccB1I	GGYRCC	1 cut(s)	1399
AccB7I	CCANNNNNTGG	2 cut(s)	1201, 1499
AciI	CCGC	4 cut(s)	984, 2073, 2232, 2438
AcoI	YGGCCR	2 cut(s)	454, 859
AcsI	RAATTY	3 cut(s)	59, 1106, 1154
AcuI	CTGAAG	2 cut(s)	2097, 2296
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	5 cut(s)	797, 847, 1188, 1634, 2031
AgsI	TTSAA	6 cut(s)	129, 1226, 1250, 1710, 2241, 2553
AhdI	GACNNNNNGTC	1 cut(s)	181
AhlI	ACTAGT	1 cut(s)	1984
AjiI	CACGTC	2 cut(s)	143, 2585
AjnI	CCWGG	6 cut(s)	109, 203, 1300, 1338, 1776, 2566
AjuI	GAANNNNNNNTTGG	2 cut(s)	2487, 2519
Alw21I	GWGCWC	1 cut(s)	1969
Alw26I	GTCTC	5 cut(s)	399, 510, 1143, 1580, 2514
Alw44I	GTGCAC	1 cut(s)	1965
AlwNI	CAGNNNCTG	4 cut(s)	1037, 1349, 2219, 2399
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	4 cut(s)	454, 555, 859, 2126
ApaLI	GTGCAC	1 cut(s)	1965
ApoI	RAATTY	3 cut(s)	59, 1106, 1154
ArsI	GACNNNNNNTTYG	4 cut(s)	1710, 1742, 2000, 2032
AspLEI	GCGC	1 cut(s)	1101
AspS9I	GGNCC	6 cut(s)	183, 556, 638, 1040, 1298, 2589
AsuC2I	CCSGG	2 cut(s)	1549, 2867
AsuHPI	GGTGA	2 cut(s)	426, 1610
AsuII	TTCGAA	1 cut(s)	1691
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	5 cut(s)	183, 638, 1040, 1298, 2589
BaeGI	GKGCMC	2 cut(s)	1402, 1969
BalI	TGGCCA	1 cut(s)	861
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	1399
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	602, 2103
Bbv12I	GWGCWC	1 cut(s)	1969
BbvCI	CCTCAGC	1 cut(s)	1750
BciT130I	CCWGG	6 cut(s)	111, 205, 1302, 1340, 1778, 2568
BciVI	GTATCC	1 cut(s)	2417
BclI	TGATCA	5 cut(s)	34, 415, 660, 1615, 1648
BcnI	CCSGG	2 cut(s)	1549, 2867
BcoDI	GTCTC	5 cut(s)	399, 510, 1143, 1580, 2514
BcuI	ACTAGT	1 cut(s)	1984
BfaI	CTAG	7 cut(s)	384, 438, 1946, 1985, 2058, 2333, 2859
BfmI	CTRYAG	5 cut(s)	178, 1628, 1803, 2088, 2187
BfuAI	ACCTGC	3 cut(s)	812, 1978, 2252
BfuI	GTATCC	1 cut(s)	2417
BglII	AGATCT	2 cut(s)	386, 610
BmcAI	AGTACT	1 cut(s)	847
Bme1390I	CCNGG	8 cut(s)	111, 205, 1302, 1340, 1549, 1778, 2568, 2867
Bme18I	GGWCC	5 cut(s)	183, 638, 1040, 1298, 2589
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	749
BmgBI	CACGTC	2 cut(s)	143, 2585
BmgT120I	GGNCC	6 cut(s)	183, 556, 638, 1040, 1298, 2589
BmiI	GGNNCC	8 cut(s)	108, 558, 639, 1401, 1491, 2590, 2733, 2864
BmrFI	CCNGG	8 cut(s)	111, 205, 1302, 1340, 1549, 1778, 2568, 2867
BmrI	ACTGGG	2 cut(s)	822, 858
BmuI	ACTGGG	2 cut(s)	822, 858
BoxI	GACNNNNGTC	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	602, 2103
BpmI	CTGGAG	1 cut(s)	2838
Bpu10I	CCTNAGC	3 cut(s)	1750, 2062, 2811
Bpu14I	TTCGAA	1 cut(s)	1691
BpuEI	CTTGAG	1 cut(s)	2825
BpuMI	CCSGG	2 cut(s)	1549, 2867
BsaBI	GATNNNNATC	4 cut(s)	9, 81, 417, 905
BsaHI	GRCGYC	1 cut(s)	298
BsaI	GGTCTC	2 cut(s)	399, 1580
BsaJI	CCNNGG	8 cut(s)	110, 204, 451, 688, 717, 1434, 2123, 2566
BsaWI	WCCGGW	3 cut(s)	185, 1523, 2591
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	6 cut(s)	817, 853, 1074, 1504, 2425, 2859
Bse3DI	GCAATG	1 cut(s)	2659
Bse8I	GATNNNNATC	4 cut(s)	9, 81, 417, 905
BseBI	CCWGG	6 cut(s)	111, 205, 1302, 1340, 1778, 2568
BseDI	CCNNGG	8 cut(s)	110, 204, 451, 688, 717, 1434, 2123, 2566
BseJI	GATNNNNATC	4 cut(s)	9, 81, 417, 905
BseMI	GCAATG	1 cut(s)	2659
BseMII	CTCAG	7 cut(s)	594, 963, 1697, 1764, 2076, 2759, 2825
BseNI	ACTGG	6 cut(s)	817, 853, 1074, 1504, 2425, 2859
BseRI	GAGGAG	2 cut(s)	1927, 2464
BseSI	GKGCMC	2 cut(s)	1402, 1969
BseYI	CCCAGC	1 cut(s)	2360
BsgI	GTGCAG	3 cut(s)	840, 1719, 2759
BshFI	GGCC	4 cut(s)	456, 557, 861, 2128
BshNI	GGYRCC	1 cut(s)	1399
BsiHKAI	GWGCWC	1 cut(s)	1969
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	8 cut(s)	186, 678, 1524, 1548, 2592, 2766, 2798, 2866
BslFI	GGGAC	6 cut(s)	153, 224, 651, 767, 2164, 2602
BsmAI	GTCTC	5 cut(s)	399, 510, 1143, 1580, 2514
BsmFI	GGGAC	6 cut(s)	153, 224, 651, 767, 2164, 2602
BsmI	GAATGC	1 cut(s)	1290
BsnI	GGCC	4 cut(s)	456, 557, 861, 2128
Bso31I	GGTCTC	2 cut(s)	399, 1580
BsoBI	CYCGRG	1 cut(s)	749
Bsp119I	TTCGAA	1 cut(s)	1691
Bsp1286I	GDGCHC	2 cut(s)	1402, 1969
Bsp1407I	TGTACA	1 cut(s)	1186
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	4 cut(s)	984, 2073, 2232, 2438
BspANI	GGCC	4 cut(s)	456, 557, 861, 2128
BspCNI	CTCAG	7 cut(s)	595, 964, 1696, 1763, 2075, 2758, 2824
BspHI	TCATGA	3 cut(s)	13, 37, 1918
BspLI	GGNNCC	8 cut(s)	108, 558, 639, 1401, 1491, 2590, 2733, 2864
BspMAI	CTGCAG	3 cut(s)	1632, 1807, 2092
BspMI	ACCTGC	3 cut(s)	812, 1978, 2252
BspT104I	TTCGAA	1 cut(s)	1691
BspT107I	GGYRCC	1 cut(s)	1399
BspTNI	GGTCTC	2 cut(s)	399, 1580
BsrDI	GCAATG	1 cut(s)	2659
BsrGI	TGTACA	1 cut(s)	1186
BsrI	ACTGG	6 cut(s)	817, 853, 1074, 1504, 2425, 2859
BssECI	CCNNGG	8 cut(s)	110, 204, 451, 688, 717, 1434, 2123, 2566
BssNI	GRCGYC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	451, 2123
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	6 cut(s)	111, 205, 1302, 1340, 1778, 2568
Bst6I	CTCTTC	3 cut(s)	508, 648, 2704
BstACI	GRCGYC	1 cut(s)	298
BstAPI	GCANNNNNTGC	2 cut(s)	1349, 1370
BstAUI	TGTACA	1 cut(s)	1186
BstBI	TTCGAA	1 cut(s)	1691
BstC8I	GCNNGC	4 cut(s)	2254, 2394, 2687, 2742
BstDEI	CTNAG	7 cut(s)	603, 972, 1683, 1750, 2062, 2745, 2811
BstDSI	CCRYGG	4 cut(s)	451, 688, 717, 1434
BstEII	GGTNACC	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	1101
BstMAI	GTCTC	5 cut(s)	399, 510, 1143, 1580, 2514
BstNI	CCWGG	6 cut(s)	111, 205, 1302, 1340, 1778, 2568
BstNSI	RCATGY	4 cut(s)	767, 1121, 1315, 2256
BstPAI	GACNNNNGTC	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	432
BstSCI	CCNGG	8 cut(s)	109, 203, 1300, 1338, 1547, 1776, 2566, 2865
BstSFI	CTRYAG	5 cut(s)	178, 1628, 1803, 2088, 2187
BstSLI	GKGCMC	2 cut(s)	1402, 1969
BstV2I	GAAGAC	2 cut(s)	602, 2103
BstX2I	RGATCY	9 cut(s)	106, 386, 610, 621, 827, 1132, 1319, 2174, 2794
BstXI	CCANNNNNNTGG	1 cut(s)	897
BstYI	RGATCY	9 cut(s)	106, 386, 610, 621, 827, 1132, 1319, 2174, 2794
BsuI	GTATCC	1 cut(s)	2417
BsuRI	GGCC	4 cut(s)	456, 557, 861, 2128
BtgI	CCRYGG	4 cut(s)	451, 688, 717, 1434
BtrI	CACGTC	2 cut(s)	143, 2585
BtsIMutI	CAGTG	8 cut(s)	94, 600, 882, 959, 1644, 2153, 2295, 2852
BveI	ACCTGC	3 cut(s)	812, 1978, 2252
Cac8I	GCNNGC	4 cut(s)	2254, 2394, 2687, 2742
CaiI	CAGNNNCTG	4 cut(s)	1037, 1349, 2219, 2399
CciI	TCATGA	3 cut(s)	13, 37, 1918
CfoI	GCGC	1 cut(s)	1101
Cfr13I	GGNCC	6 cut(s)	183, 556, 638, 1040, 1298, 2589
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	5 cut(s)	796, 846, 1187, 1633, 2030
CspCI	CAANNNNNGTGG	2 cut(s)	2112, 2147
CviQI	GTAC	5 cut(s)	796, 846, 1187, 1633, 2030
DdeI	CTNAG	7 cut(s)	603, 972, 1683, 1750, 2062, 2745, 2811
DraI	TTTAAA	1 cut(s)	1467
DrdI	GACNNNNNNGTC	2 cut(s)	645, 2775
DriI	GACNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	2 cut(s)	645, 2775
EaeI	YGGCCR	2 cut(s)	454, 859
Eam1104I	CTCTTC	3 cut(s)	508, 648, 2704
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	3 cut(s)	508, 648, 2704
Eco130I	CCWWGG	2 cut(s)	451, 2123
Eco147I	AGGCCT	1 cut(s)	2128
Eco31I	GGTCTC	2 cut(s)	399, 1580
Eco32I	GATATC	1 cut(s)	2290
Eco47I	GGWCC	5 cut(s)	183, 638, 1040, 1298, 2589
Eco57I	CTGAAG	2 cut(s)	2097, 2296
Eco88I	CYCGRG	1 cut(s)	749
Eco91I	GGTNACC	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	432
EcoRII	CCWGG	6 cut(s)	109, 203, 1300, 1338, 1776, 2566
EcoRV	GATATC	1 cut(s)	2290
EcoT14I	CCWWGG	2 cut(s)	451, 2123
EcoT22I	ATGCAT	3 cut(s)	163, 2258, 2326
ErhI	CCWWGG	2 cut(s)	451, 2123
FaqI	GGGAC	6 cut(s)	153, 224, 651, 767, 2164, 2602
FauI	CCCGC	1 cut(s)	991
FauNDI	CATATG	2 cut(s)	163, 1279
FbaI	TGATCA	5 cut(s)	34, 415, 660, 1615, 1648
FspBI	CTAG	7 cut(s)	384, 438, 1946, 1985, 2058, 2333, 2859
GlaI	GCGC	1 cut(s)	1100
GsaI	CCCAGC	1 cut(s)	2364
GsuI	CTGGAG	1 cut(s)	2838
HaeIII	GGCC	4 cut(s)	456, 557, 861, 2128
HapII	CCGG	8 cut(s)	186, 678, 1524, 1548, 2592, 2766, 2798, 2866
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	1101
Hin1I	GRCGYC	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	1099
HinP1I	GCGC	1 cut(s)	1099
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaII	CCGG	8 cut(s)	186, 678, 1524, 1548, 2592, 2766, 2798, 2866
HphI	GGTGA	2 cut(s)	426, 1610
Hpy166II	GTNNAC	4 cut(s)	94, 1067, 1189, 1967
Hpy8I	GTNNAC	4 cut(s)	94, 1067, 1189, 1967
Hpy99I	CGWCG	1 cut(s)	303
HpyCH4IV	ACGT	4 cut(s)	142, 670, 1138, 2584
HpyF3I	CTNAG	7 cut(s)	603, 972, 1683, 1750, 2062, 2745, 2811
HpySE526I	ACGT	4 cut(s)	142, 670, 1138, 2584
Hsp92I	GRCGYC	1 cut(s)	298
HspAI	GCGC	1 cut(s)	1099
Ksp22I	TGATCA	5 cut(s)	34, 415, 660, 1615, 1648
LmnI	GCTCC	6 cut(s)	722, 985, 1126, 1447, 1495, 2451
MaeI	CTAG	7 cut(s)	384, 438, 1946, 1985, 2058, 2333, 2859
MaeII	ACGT	4 cut(s)	142, 670, 1138, 2584
MaeIII	GTNAC	7 cut(s)	311, 323, 432, 1526, 1589, 1930, 2612
MfeI	CAATTG	3 cut(s)	289, 1353, 2640
MflI	RGATCY	9 cut(s)	106, 386, 610, 621, 827, 1132, 1319, 2174, 2794
MhlI	GDGCHC	2 cut(s)	1402, 1969
MlsI	TGGCCA	1 cut(s)	861
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	6 cut(s)	367, 1924, 2117, 2516, 2519, 2785
MmeI	TCCRAC	1 cut(s)	1372
Mox20I	TGGCCA	1 cut(s)	861
Mph1103I	ATGCAT	3 cut(s)	163, 2258, 2326
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	4 cut(s)	338, 924, 1268, 1466
MslI	CAYNNNNRTG	4 cut(s)	249, 408, 654, 884
Msp20I	TGGCCA	1 cut(s)	861
MspA1I	CMGCKG	3 cut(s)	912, 1346, 1754
MspI	CCGG	8 cut(s)	186, 678, 1524, 1548, 2592, 2766, 2798, 2866
MspR9I	CCNGG	8 cut(s)	111, 205, 1302, 1340, 1549, 1778, 2568, 2867
MunI	CAATTG	3 cut(s)	289, 1353, 2640
Mva1269I	GAATGC	1 cut(s)	1290
MvaI	CCWGG	6 cut(s)	111, 205, 1302, 1340, 1778, 2568
NciI	CCSGG	2 cut(s)	1549, 2867
NcoI	CCATGG	1 cut(s)	451
NdeI	CATATG	2 cut(s)	163, 1279
NlaIV	GGNNCC	8 cut(s)	108, 558, 639, 1401, 1491, 2590, 2733, 2864
NmeAIII	GCCGAG	1 cut(s)	2504
NmuCI	GTSAC	3 cut(s)	311, 323, 432
NsiI	ATGCAT	3 cut(s)	163, 2258, 2326
NspI	RCATGY	4 cut(s)	767, 1121, 1315, 2256
NspV	TTCGAA	1 cut(s)	1691
PaeI	GCATGC	1 cut(s)	2256
PagI	TCATGA	3 cut(s)	13, 37, 1918
PaqCI	CACCTGC	2 cut(s)	812, 1978
PceI	AGGCCT	1 cut(s)	2128
PcsI	WCGNNNNNNNCGW	2 cut(s)	307, 652
PctI	GAATGC	1 cut(s)	1290
PfeI	GAWTC	7 cut(s)	5, 254, 305, 1667, 2282, 2379, 2549
PflFI	GACNNNGTC	1 cut(s)	2014
PflMI	CCANNNNNTGG	2 cut(s)	1201, 1499
PfoI	TCCNGGA	2 cut(s)	1300, 2865
PleI	GAGTC	6 cut(s)	366, 1923, 2116, 2516, 2518, 2784
PpsI	GAGTC	6 cut(s)	366, 1923, 2116, 2516, 2518, 2784
PpuMI	RGGWCCY	1 cut(s)	638
PshAI	GACNNNNGTC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	2829
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	6 cut(s)	109, 203, 1300, 1338, 1776, 2566
PspEI	GGTNACC	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	2360
PspGI	CCWGG	6 cut(s)	109, 203, 1300, 1338, 1776, 2566
PspN4I	GGNNCC	8 cut(s)	108, 558, 639, 1401, 1491, 2590, 2733, 2864
PspPI	GGNCC	6 cut(s)	183, 556, 638, 1040, 1298, 2589
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	3 cut(s)	1632, 1807, 2092
PstNI	CAGNNNCTG	4 cut(s)	1037, 1349, 2219, 2399
PsuI	RGATCY	9 cut(s)	106, 386, 610, 621, 827, 1132, 1319, 2174, 2794
PsyI	GACNNNGTC	1 cut(s)	2014
PvuII	CAGCTG	3 cut(s)	912, 1346, 1754
RsaI	GTAC	5 cut(s)	797, 847, 1188, 1634, 2031
RsaNI	GTAC	5 cut(s)	796, 846, 1187, 1633, 2030
RseI	CAYNNNNRTG	4 cut(s)	249, 408, 654, 884
SaqAI	TTAA	4 cut(s)	338, 924, 1268, 1466
Sau96I	GGNCC	6 cut(s)	183, 556, 638, 1040, 1298, 2589
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	6 cut(s)	367, 1924, 2117, 2516, 2519, 2785
ScrFI	CCNGG	8 cut(s)	111, 205, 1302, 1340, 1549, 1778, 2568, 2867
SduI	GDGCHC	2 cut(s)	1402, 1969
SfcI	CTRYAG	5 cut(s)	178, 1628, 1803, 2088, 2187
SfuI	TTCGAA	1 cut(s)	1691
SinI	GGWCC	5 cut(s)	183, 638, 1040, 1298, 2589
SmiMI	CAYNNNNRTG	4 cut(s)	249, 408, 654, 884
SmlI	CTYRAG	1 cut(s)	2804
SmoI	CTYRAG	1 cut(s)	2804
SpeI	ACTAGT	1 cut(s)	1984
SphI	GCATGC	1 cut(s)	2256
SseBI	AGGCCT	1 cut(s)	2128
SsiI	CCGC	4 cut(s)	984, 2073, 2232, 2438
SspMI	CTAG	7 cut(s)	384, 438, 1946, 1985, 2058, 2333, 2859
StuI	AGGCCT	1 cut(s)	2128
StyD4I	CCNGG	8 cut(s)	109, 203, 1300, 1338, 1547, 1776, 2566, 2865
StyI	CCWWGG	2 cut(s)	451, 2123
TaiI	ACGT	4 cut(s)	145, 673, 1141, 2587
TaqI	TCGA	5 cut(s)	397, 445, 466, 1691, 2518
TaqII	GACCGA	1 cut(s)	381
TatI	WGTACW	4 cut(s)	795, 845, 1186, 1632
TauI	GCSGC	1 cut(s)	2441
TfiI	GAWTC	7 cut(s)	5, 254, 305, 1667, 2282, 2379, 2549
Tru1I	TTAA	4 cut(s)	338, 924, 1268, 1466
Tru9I	TTAA	4 cut(s)	338, 924, 1268, 1466
TscAI	CASTG	8 cut(s)	94, 607, 889, 959, 1651, 2160, 2302, 2859
TseFI	GTSAC	3 cut(s)	311, 323, 432
Tsp45I	GTSAC	3 cut(s)	311, 323, 432
TspDTI	ATGAA	4 cut(s)	990, 1089, 1119, 1935
TspGWI	ACGGA	3 cut(s)	20, 644, 706
TspRI	CASTG	8 cut(s)	94, 607, 889, 959, 1651, 2160, 2302, 2859
Tth111I	GACNNNGTC	1 cut(s)	2014
Van91I	CCANNNNNTGG	2 cut(s)	1201, 1499
VneI	GTGCAC	1 cut(s)	1965
VpaK11BI	GGWCC	5 cut(s)	183, 638, 1040, 1298, 2589
XapI	RAATTY	3 cut(s)	59, 1106, 1154
XbaI	TCTAGA	2 cut(s)	383, 1945
XceI	RCATGY	4 cut(s)	767, 1121, 1315, 2256
XspI	CTAG	7 cut(s)	384, 438, 1946, 1985, 2058, 2333, 2859
ZrmI	AGTACT	1 cut(s)	847
Zsp2I	ATGCAT	3 cut(s)	163, 2258, 2326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.