Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Reverse (-)

33354497 .. 33364009

Gene Structure 9513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1152000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3123 bp

ATGGATCCCGGTCGCTATGGTCATCAGCAAGGATGGGATAATAACAGCGCTCTGGAGGGGTATGGTGCAGTCCACGAGCCAAACTTTCGGGTCAGTGGTTCATATGATGAGAGGAGATTTATAGATGAAAGATACTCAAGGGACAATGTCTATCCAAGAAATGCTTTTCACCGTGATGTTCTGGATAGGGATAACTATCCACCGCCACCTCCTCATGCTGTTGGTGTCTGGCCACACTCAAGAAGAAGTTATGAGGAGGATATTCCAATCGAGAGGGAACCTAGGCGACATGAGAAACAATACATGGATTCGTATCACGAGATGGATAACTTTCTTGATCATGAGATCGATACATTTCAGGATTTTGATAAATTTCGGGATAGCTATCGTAGTGTTGACAACTATCGTGATCCTAGGTTTGACAAGATTGCTCGGTTTGGTGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTCCAGGCCTCGTGCAACCCATCAGAACAGGGAGGATAGTCGTGGAAGGGATTATGACTATGGTCGATATAGTTATGATTCTGATTACGACAGAAGTAGTAGGAGAGATGGCAATTGGAGGCGTCGGGGATCTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTATGAGTAGGGAGAGAGAACAGAGTCCACATAGAAGGCATGAGCGTTCCCGTTCTCGGTCAATTTCTCGTGGGCATGATGATCGCCCTAGATCAAGGTCCCCTAGAGGTCGAAGCCATGGGCGAAGTCATCGAGAGGACAGCTATGATGATGAACAGTATGAGAGTACTGATAAGCGAAGGGACCGTGATGAGAAACGCCATAGAGAACATTATTCTGTGGCCCCATCTGCAACTATTGTAGTGAAGGGTCTTTCCCAGAAGACGAATGAGGAAGATTTATACCAGATACTTGCTGAATGGGGACCTCTTCGACATGTCCGTGTGATCAAAGAACGTAATTCTGGCACTTCTCGTGGTTTTGCATTTATTGATTTTCCTTCTGTGGGAGCAGCTTGCACTATGATGGACAAGATTGGGGATGAAGGGCTTGTGGTCGATGACAGGAAGCTGTTTTTTGAGTATAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGATAATGCCGTTAAATTAGGCCATAATAGCCATAAAAGCATCACAGTGCCATCTGATTGGATGTGCATAAGTTGTGAATATGTTAATTTTGCACGGCGCACTTCCTGTTTTCAGTGCAATAAGGCACGAACTGAGGATGCTCCTGCAGCAGATATTTCTTTTTCCAATCAAACGACTTCAGCTAAGAAGGGTTCTGAAGCTGGTCCTACTCATGTCTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAGTTTTCCAAACATGCTGCAATTAAGGATCTTCGTCTTGTTAGAGACAAATTTACTCATGTTTCAAGAGGATTTGCTTTTGTACATTTCCATTCGGTAGGAGATGCTACAAAAGCTCTTGAAGCAACAAACGGAACAACACTTGAGAGGAATGGGCAAATTTTGAGAGTAGCATATGCAAAGAGCGTTCTTGGTCCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCCACATTTGCTCAACAGTACGACGCTGTTGGATGGGCTCCAAAGGAATATAATCCAGATGATAAACAATCCGCTACTGGGAACGAGCAAAATGGTGGGGAGATGGCAGTACAACAAGATGGTTTGGTTCCACAATCTGGTTTTGTGTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCTGGGTTCTACTATGACCCAAATACAGGCCTTTACTACGATGGCAACAATGGCATTTGGTATACATATGACCAACAAACTCAGCAGTACATCCCTTGTACTGATCAAAATGATAACAAAACATCTGCTGATCAATCTGAGCTTTCCAAGGCATCGGATGGTTCAAGTAACAGAAAAGCAGTAATTTCTGCACCAGCTACAACGTCAACATCTGAGAAGGCTGCGTCGTTACCAGATGCAGTCCAGGCTGCTGCAGCAGCAGCAATAGCTGCAGAGAAAAAGGAAAAGGAAAAGGCAAAAGAGATCAAACTGGCTTCAAAGAGCAGTATTTTGGCAAACAAGAAAAAAATGAGTAATGTGTTGACAATGTGGAAGCAAAGGAATCATGAAGGGCAAGCAACCCGTGTAGCTCTGGATGACAACCAGCCAAGTGGTTCGGCTGATGATAGACCAGTTTCCTCTGTGCAGTCTGCAAAGAGCAAGTTTAAAACTGATGTGACAAAGGAGACTACTACATCCAATTCAGGGGTTACTGCAACTGTTTCTGCTGCAGAGACTGTTGGTTTGGAGTGCCCAGTTATGCCAAGGCCTGTGAGTAACAGTATAGGAGGGACGGTGATGGGAGTCATAAGGGGATCTGGAAGAGGTGTGCTGAAATCAGATGCCTCGTTTTCAGGATCAAGTGTTGGAGTTTCCACACCTTCAACTTCTGCTCCAGGCATGGCAGGTTCATCTGCATCAACAAATGCAGTTACCCCCACAGCTTTGACACCCTTTAGAACAGATGCATCTGCATTGGGTTCTTATACGCCACCTGTTGCTGCTGGGAGTGGAAAGAGGAGATTTTCTGAAATGCCACTAACTCCTGCTTCTGCTCCTAAAGAACCTCATACTGCATACAGGGATCGTGCTGCCGAGAGAAGGAACCTGTATGGTTCGTCAGCGTCTTTTGGTGATAATGCATCTGACCTTAGTTTTGCGGAGTCAAATCGAGATTCTGCATCAAGAAAGGGTTCTTATGATTCAATGCCTTTTCCCCCTGGTGTTGGTGGAGGACGTGGGGTTGGAGATGCCAACAATGACAGTTATGAGGTGATTACGGCTGAAAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAACATGGGCTGGCATGAAGGCTCGATAGCAACCCCAAAAAAATACCCCTTATTGAACTCGAATTACATGATTCAGGCAGAGCTCTATTTTCTGTATAGGTCAAAAGTGAATTTGGTAGTGCTATTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1041

Amino Acids

115.61

Weight (kDa)

6.86

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	295 - 347	4.6e-11	RNA recognition motif
RRM_1	PF00076	456 - 521	3.7e-16	RNA recognition motif
OCRE	PF17780	597 - 646	3e-20	OCRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3121
AarI	CACCTGC	1 cut(s)	1121
Acc36I	ACCTGC	2 cut(s)	1121, 2558
AccB7I	CCANNNNNTGG	1 cut(s)	1796
AccI	GTMKAC	1 cut(s)	1904
AciI	CCGC	3 cut(s)	203, 1731, 2822
AclWI	GGATC	9 cut(s)	12, 404, 616, 1144, 1452, 1624, 2485, 2527, 2754
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	4 cut(s)	371, 1466, 1575, 3100
AcuI	CTGAAG	2 cut(s)	1311, 1365
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	6 cut(s)	814, 1500, 1679, 1770, 1931, 1942
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	9 cut(s)	702, 1031, 1124, 1737, 1796, 1868, 2367, 2763, 2888
AflIII	ACRYGT	1 cut(s)	961
AgsI	TTSAA	7 cut(s)	1482, 1538, 2007, 2160, 2547, 2868, 3046
AjiI	CACGTC	2 cut(s)	446, 2900
AjnI	CCWGG	6 cut(s)	482, 1612, 1635, 2085, 2557, 2881
Alw21I	GWGCWC	1 cut(s)	3075
Alw26I	GTCTC	3 cut(s)	1455, 2342, 2390
AlwI	GGATC	9 cut(s)	12, 404, 616, 1144, 1452, 1624, 2485, 2527, 2754
AlwNI	CAGNNNCTG	2 cut(s)	1646, 2399
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	6 cut(s)	230, 485, 867, 1168, 1870, 2429
ApoI	RAATTY	4 cut(s)	371, 1466, 1575, 3100
ArsI	GACNNNNNNTTYG	4 cut(s)	2389, 2421, 2801, 2833
Asp700I	GAANNNNTTC	1 cut(s)	2854
AspA2I	CCTAGG	2 cut(s)	281, 413
AspLEI	GCGC	3 cut(s)	50, 1248, 1413
AspS9I	GGNCC	6 cut(s)	744, 829, 868, 950, 1352, 1610
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	4 cut(s)	161, 2470, 2807, 2947
AvaII	GGWCC	5 cut(s)	744, 829, 950, 1352, 1610
AvrII	CCTAGG	2 cut(s)	281, 413
BaeGI	GKGCMC	1 cut(s)	2417
BalI	TGGCCA	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	1699, 3075
BauI	CACGAG	7 cut(s)	74, 317, 489, 612, 621, 714, 999
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	1 cut(s)	3075
BceAI	ACGGC	3 cut(s)	1142, 1259, 2958
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	6 cut(s)	484, 1614, 1637, 2087, 2559, 2883
BclI	TGATCA	4 cut(s)	337, 972, 1945, 1972
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	3 cut(s)	1455, 2342, 2390
BfaI	CTAG	4 cut(s)	282, 414, 735, 750
BfmI	CTRYAG	4 cut(s)	1293, 2094, 2112, 2391
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	2 cut(s)	1121, 2558
BlnI	CCTAGG	2 cut(s)	281, 413
BmcAI	AGTACT	1 cut(s)	814
Bme1390I	CCNGG	7 cut(s)	9, 484, 1614, 1637, 2087, 2559, 2883
Bme18I	GGWCC	5 cut(s)	744, 829, 950, 1352, 1610
BmgBI	CACGTC	2 cut(s)	446, 2900
BmgT120I	GGNCC	6 cut(s)	744, 829, 868, 950, 1352, 1610
BmiI	GGNNCC	9 cut(s)	6, 279, 746, 830, 870, 951, 1698, 1788, 2768
BmrFI	CCNGG	7 cut(s)	9, 484, 1614, 1637, 2087, 2559, 2883
BmrI	ACTGGG	3 cut(s)	1131, 1746, 2411
BmuI	ACTGGG	3 cut(s)	1131, 1746, 2411
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	914
BpmI	CTGGAG	3 cut(s)	74, 466, 2541
BpuEI	CTTGAG	3 cut(s)	121, 223, 1580
BpuMI	CCSGG	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	3 cut(s)	195, 312, 384
BsaHI	GRCGYC	1 cut(s)	601
BsaJI	CCNNGG	6 cut(s)	281, 413, 763, 1989, 2426, 2881
BsaXI	ACNNNNNCTCC	4 cut(s)	2442, 2472, 2539, 2569
Bsc4I	CCNNNNNNNGG	9 cut(s)	702, 1031, 1124, 1737, 1796, 1868, 2367, 2763, 2888
Bse1I	ACTGG	6 cut(s)	1126, 1386, 1741, 2157, 2294, 2417
Bse3DI	GCAATG	1 cut(s)	2974
Bse8I	GATNNNNATC	3 cut(s)	195, 312, 384
BseBI	CCWGG	6 cut(s)	484, 1614, 1637, 2087, 2559, 2883
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	6 cut(s)	281, 413, 763, 1989, 2426, 2881
BseJI	GATNNNNATC	3 cut(s)	195, 312, 384
BseLI	CCNNNNNNNGG	9 cut(s)	702, 1031, 1124, 1737, 1796, 1868, 2367, 2763, 2888
BseMI	GCAATG	1 cut(s)	2974
BseMII	CTCAG	4 cut(s)	1272, 1937, 1971, 2046
BseNI	ACTGG	6 cut(s)	1126, 1386, 1741, 2157, 2294, 2417
BseRI	GAGGAG	4 cut(s)	127, 201, 269, 2695
BseSI	GKGCMC	1 cut(s)	2417
BseYI	CCCAGC	1 cut(s)	2666
BsgI	GTGCAG	4 cut(s)	87, 1149, 2016, 2327
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	6 cut(s)	232, 487, 869, 1170, 1872, 2431
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	3075
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	5 cut(s)	155, 730, 842, 963, 2467
BslI	CCNNNNNNNGG	9 cut(s)	702, 1031, 1124, 1737, 1796, 1868, 2367, 2763, 2888
BsmAI	GTCTC	3 cut(s)	1455, 2342, 2390
BsmFI	GGGAC	5 cut(s)	155, 730, 842, 963, 2467
BsnI	GGCC	6 cut(s)	232, 487, 869, 1170, 1872, 2431
Bsp1286I	GDGCHC	3 cut(s)	1699, 2417, 3075
Bsp1407I	TGTACA	1 cut(s)	1498
Bsp19I	CCATGG	1 cut(s)	763
BspACI	CCGC	3 cut(s)	203, 1731, 2822
BspANI	GGCC	6 cut(s)	232, 487, 869, 1170, 1872, 2431
BspCNI	CTCAG	4 cut(s)	1273, 1936, 1972, 2047
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	2 cut(s)	340, 2227
BspLI	GGNNCC	9 cut(s)	6, 279, 746, 830, 870, 951, 1698, 1788, 2768
BspMAI	CTGCAG	4 cut(s)	1297, 2098, 2116, 2395
BspMI	ACCTGC	2 cut(s)	1121, 2558
BspPI	GGATC	9 cut(s)	12, 404, 616, 1144, 1452, 1624, 2485, 2527, 2754
BsrDI	GCAATG	1 cut(s)	2974
BsrGI	TGTACA	1 cut(s)	1498
BsrI	ACTGG	6 cut(s)	1126, 1386, 1741, 2157, 2294, 2417
BssECI	CCNNGG	6 cut(s)	281, 413, 763, 1989, 2426, 2881
BssNAI	GTATAC	1 cut(s)	1905
BssNI	GRCGYC	1 cut(s)	601
BssSI	CACGAG	7 cut(s)	74, 317, 489, 612, 621, 714, 999
BssT1I	CCWWGG	5 cut(s)	281, 413, 763, 1989, 2426
Bst1107I	GTATAC	1 cut(s)	1905
Bst2BI	CACGAG	7 cut(s)	74, 317, 489, 612, 621, 714, 999
Bst2UI	CCWGG	6 cut(s)	484, 1614, 1637, 2087, 2559, 2883
Bst6I	CTCTTC	2 cut(s)	960, 2479
BstACI	GRCGYC	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	1646, 2111
BstAUI	TGTACA	1 cut(s)	1498
BstC8I	GCNNGC	3 cut(s)	1042, 2238, 3002
BstDEI	CTNAG	6 cut(s)	1281, 1332, 1923, 1980, 2055, 2813
BstDSI	CCRYGG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	3 cut(s)	50, 1248, 1413
BstMAI	GTCTC	3 cut(s)	1455, 2342, 2390
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	6 cut(s)	484, 1614, 1637, 2087, 2559, 2883
BstNSI	RCATGY	2 cut(s)	965, 1433
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	7 cut(s)	7, 482, 1612, 1635, 2085, 2557, 2881
BstSFI	CTRYAG	4 cut(s)	1293, 2094, 2112, 2391
BstSLI	GKGCMC	1 cut(s)	2417
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	6 cut(s)	4, 608, 1136, 1444, 1616, 2477
BstXI	CCANNNNNNTGG	2 cut(s)	1206, 2273
BstYI	RGATCY	6 cut(s)	4, 608, 1136, 1444, 1616, 2477
BstZ17I	GTATAC	1 cut(s)	1905
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	6 cut(s)	232, 487, 869, 1170, 1872, 2431
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	763
BtrI	CACGTC	2 cut(s)	446, 2900
BtsIMutI	CAGTG	3 cut(s)	100, 1200, 1268
BveI	ACCTGC	2 cut(s)	1121, 2558
Cac8I	GCNNGC	3 cut(s)	1042, 2238, 3002
CaiI	CAGNNNCTG	2 cut(s)	1646, 2399
CciI	TCATGA	2 cut(s)	340, 2227
CfoI	GCGC	3 cut(s)	50, 1248, 1413
Cfr13I	GGNCC	6 cut(s)	744, 829, 868, 950, 1352, 1610
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	4 cut(s)	590, 1691, 2055, 2775
Csp6I	GTAC	6 cut(s)	813, 1499, 1678, 1769, 1930, 1941
CviQI	GTAC	6 cut(s)	813, 1499, 1678, 1769, 1930, 1941
DdeI	CTNAG	6 cut(s)	1281, 1332, 1923, 1980, 2055, 2813
DraI	TTTAAA	1 cut(s)	2329
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	960, 2479
EarI	CTCTTC	2 cut(s)	960, 2479
Ecl136II	GAGCTC	1 cut(s)	3073
Eco130I	CCWWGG	5 cut(s)	281, 413, 763, 1989, 2426
Eco147I	AGGCCT	3 cut(s)	487, 1872, 2431
Eco24I	GRGCYC	2 cut(s)	1699, 3075
Eco47I	GGWCC	5 cut(s)	744, 829, 950, 1352, 1610
Eco47III	AGCGCT	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	3073
Eco57I	CTGAAG	2 cut(s)	1311, 1365
EcoICRI	GAGCTC	1 cut(s)	3073
EcoO109I	RGGNCCY	2 cut(s)	744, 950
EcoRII	CCWGG	6 cut(s)	482, 1612, 1635, 2085, 2557, 2881
EcoT14I	CCWWGG	5 cut(s)	281, 413, 763, 1989, 2426
EcoT22I	ATGCAT	3 cut(s)	466, 2632, 2806
EcoT38I	GRGCYC	2 cut(s)	1699, 3075
ErhI	CCWWGG	5 cut(s)	281, 413, 763, 1989, 2426
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	5 cut(s)	155, 730, 842, 963, 2467
FauNDI	CATATG	4 cut(s)	103, 466, 1591, 1909
FbaI	TGATCA	4 cut(s)	337, 972, 1945, 1972
FblI	GTMKAC	1 cut(s)	1904
FriOI	GRGCYC	2 cut(s)	1699, 3075
FspBI	CTAG	4 cut(s)	282, 414, 735, 750
GlaI	GCGC	3 cut(s)	49, 1247, 1412
GsaI	CCCAGC	1 cut(s)	2670
GsuI	CTGGAG	3 cut(s)	74, 466, 2541
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	6 cut(s)	232, 487, 869, 1170, 1872, 2431
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	4 cut(s)	590, 1691, 2055, 2775
HhaI	GCGC	3 cut(s)	50, 1248, 1413
Hin1I	GRCGYC	1 cut(s)	601
Hin6I	GCGC	3 cut(s)	48, 1246, 1411
HinP1I	GCGC	3 cut(s)	48, 1246, 1411
HincII	GTYRAC	3 cut(s)	397, 2049, 2205
HindII	GTYRAC	3 cut(s)	397, 2049, 2205
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	4 cut(s)	161, 2470, 2807, 2947
Hpy166II	GTNNAC	8 cut(s)	73, 397, 443, 674, 1379, 1905, 2049, 2205
Hpy8I	GTNNAC	8 cut(s)	73, 397, 443, 674, 1379, 1905, 2049, 2205
Hpy99I	CGWCG	3 cut(s)	606, 1685, 2071
HpyCH4IV	ACGT	4 cut(s)	445, 982, 2045, 2899
HpyF3I	CTNAG	6 cut(s)	1281, 1332, 1923, 1980, 2055, 2813
HpySE526I	ACGT	4 cut(s)	445, 982, 2045, 2899
Hsp92I	GRCGYC	1 cut(s)	601
HspAI	GCGC	3 cut(s)	48, 1246, 1411
Ksp22I	TGATCA	4 cut(s)	337, 972, 1945, 1972
LmnI	GCTCC	5 cut(s)	1034, 1294, 1702, 2560, 2722
MaeI	CTAG	4 cut(s)	282, 414, 735, 750
MaeII	ACGT	4 cut(s)	445, 982, 2045, 2899
MaeIII	GTNAC	8 cut(s)	623, 635, 2009, 2070, 2338, 2371, 2438, 2593
MboII	GAAGA	7 cut(s)	255, 919, 932, 947, 1439, 1611, 2496
MfeI	CAATTG	3 cut(s)	592, 1650, 2955
MflI	RGATCY	6 cut(s)	4, 608, 1136, 1444, 1616, 2477
MhlI	GDGCHC	3 cut(s)	1699, 2417, 3075
MlsI	TGGCCA	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	4 cut(s)	473, 679, 2475, 2834
MmeI	TCCRAC	3 cut(s)	1669, 2509, 2887
Mox20I	TGGCCA	1 cut(s)	232
Mph1103I	ATGCAT	3 cut(s)	466, 2632, 2806
MroXI	GAANNNNTTC	1 cut(s)	2854
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	4 cut(s)	1161, 1233, 1440, 2328
MslI	CAYNNNNRTG	4 cut(s)	174, 966, 1049, 1193
Msp20I	TGGCCA	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	1643
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	7 cut(s)	9, 484, 1614, 1637, 2087, 2559, 2883
MunI	CAATTG	3 cut(s)	592, 1650, 2955
MvaI	CCWGG	6 cut(s)	484, 1614, 1637, 2087, 2559, 2883
NciI	CCSGG	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	763
NdeI	CATATG	4 cut(s)	103, 466, 1591, 1909
NlaIV	GGNNCC	9 cut(s)	6, 279, 746, 830, 870, 951, 1698, 1788, 2768
NmeAIII	GCCGAG	1 cut(s)	2782
NmuCI	GTSAC	3 cut(s)	623, 635, 2338
NsiI	ATGCAT	3 cut(s)	466, 2632, 2806
NspI	RCATGY	2 cut(s)	965, 1433
PagI	TCATGA	2 cut(s)	340, 2227
PaqCI	CACCTGC	1 cut(s)	1121
PceI	AGGCCT	3 cut(s)	487, 1872, 2431
PciI	ACATGT	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	3 cut(s)	610, 619, 964
PdmI	GAANNNNTTC	1 cut(s)	2854
PfeI	GAWTC	7 cut(s)	308, 557, 617, 2224, 2837, 2864, 3061
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	1796
PfoI	TCCNGGA	1 cut(s)	1612
PleI	GAGTC	4 cut(s)	473, 678, 2474, 2833
PpsI	GAGTC	4 cut(s)	473, 678, 2474, 2833
PpuMI	RGGWCCY	2 cut(s)	744, 950
PscI	ACATGT	1 cut(s)	961
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	3121
Psp124BI	GAGCTC	1 cut(s)	3075
Psp5II	RGGWCCY	2 cut(s)	744, 950
Psp6I	CCWGG	6 cut(s)	482, 1612, 1635, 2085, 2557, 2881
PspFI	CCCAGC	1 cut(s)	2666
PspGI	CCWGG	6 cut(s)	482, 1612, 1635, 2085, 2557, 2881
PspN4I	GGNNCC	9 cut(s)	6, 279, 746, 830, 870, 951, 1698, 1788, 2768
PspPI	GGNCC	6 cut(s)	744, 829, 868, 950, 1352, 1610
PspPPI	RGGWCCY	2 cut(s)	744, 950
PsrI	GAACNNNNNNTAC	2 cut(s)	3038, 3070
PstI	CTGCAG	4 cut(s)	1297, 2098, 2116, 2395
PstNI	CAGNNNCTG	2 cut(s)	1646, 2399
PsuI	RGATCY	6 cut(s)	4, 608, 1136, 1444, 1616, 2477
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	1643
RsaI	GTAC	6 cut(s)	814, 1500, 1679, 1770, 1931, 1942
RsaNI	GTAC	6 cut(s)	813, 1499, 1678, 1769, 1930, 1941
RseI	CAYNNNNRTG	4 cut(s)	174, 966, 1049, 1193
SacI	GAGCTC	1 cut(s)	3075
SaqAI	TTAA	4 cut(s)	1161, 1233, 1440, 2328
Sau96I	GGNCC	6 cut(s)	744, 829, 868, 950, 1352, 1610
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	4 cut(s)	473, 679, 2475, 2834
ScrFI	CCNGG	7 cut(s)	9, 484, 1614, 1637, 2087, 2559, 2883
SduI	GDGCHC	3 cut(s)	1699, 2417, 3075
SfcI	CTRYAG	4 cut(s)	1293, 2094, 2112, 2391
SinI	GGWCC	5 cut(s)	744, 829, 950, 1352, 1610
SmiMI	CAYNNNNRTG	4 cut(s)	174, 966, 1049, 1193
SmlI	CTYRAG	3 cut(s)	136, 238, 1559
SmoI	CTYRAG	3 cut(s)	136, 238, 1559
SseBI	AGGCCT	3 cut(s)	487, 1872, 2431
SsiI	CCGC	3 cut(s)	203, 1731, 2822
SspMI	CTAG	4 cut(s)	282, 414, 735, 750
SstI	GAGCTC	1 cut(s)	3075
StuI	AGGCCT	3 cut(s)	487, 1872, 2431
StyD4I	CCNGG	7 cut(s)	7, 482, 1612, 1635, 2085, 2557, 2881
StyI	CCWWGG	5 cut(s)	281, 413, 763, 1989, 2426
TaiI	ACGT	4 cut(s)	448, 985, 2048, 2902
TaqII	GACCGA	1 cut(s)	693
TatI	WGTACW	5 cut(s)	812, 1498, 1768, 1929, 1940
TfiI	GAWTC	7 cut(s)	308, 557, 617, 2224, 2837, 2864, 3061
Tru1I	TTAA	4 cut(s)	1161, 1233, 1440, 2328
Tru9I	TTAA	4 cut(s)	1161, 1233, 1440, 2328
TscAI	CASTG	3 cut(s)	100, 1200, 1268
TseFI	GTSAC	3 cut(s)	623, 635, 2338
Tsp45I	GTSAC	3 cut(s)	623, 635, 2338
TspDTI	ATGAA	8 cut(s)	90, 141, 813, 1083, 1401, 2244, 2562, 3021
TspGWI	ACGGA	2 cut(s)	956, 1563
TspRI	CASTG	3 cut(s)	100, 1200, 1268
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	1796
VpaK11BI	GGWCC	5 cut(s)	744, 829, 950, 1352, 1610
XapI	RAATTY	4 cut(s)	371, 1466, 1575, 3100
XceI	RCATGY	2 cut(s)	965, 1433
XmaJI	CCTAGG	2 cut(s)	281, 413
XmiI	GTMKAC	1 cut(s)	1904
XmnI	GAANNNNTTC	1 cut(s)	2854
XspI	CTAG	4 cut(s)	282, 414, 735, 750
ZrmI	AGTACT	1 cut(s)	814
Zsp2I	ATGCAT	3 cut(s)	466, 2632, 2806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.