Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Forward (+)

12345754 .. 12356434

Gene Structure 10681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG079200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3030 bp

ATGGATTCCGGTCGCTATGGTCTTCAGCAAGGATGGGATAATAACAGCGCTCCGGAGGGGTATGGTGCAGTTCATGAGCCAAACTTTCGGGTCGGTGGTTCATATGATGAGAGAAGGTTTATAGAGGAAAGGTACTCAAGGGACAATGTTTATCCAAGAAGCACATTCCACCGTGATGTTCTGGATAGGGATAACTACCCACCACCACCTCATGCTGTTGGTATATGGCCACATTCAAGAAGGAGAAGTTACGAAGAAGAATTTCCCATTGATAGGGAACCTAGGAGACATGAGAAACAGTACATGGATTCATATCATGAGATGGATAACCTCCGTGATCATGAGATTGATACATTTCAGGAATTTGATAAATTACGGGATGGCTATCACAGTGTTGACAGCTATCGGGATCCTGGGTTTGAGAGGACTTCAAGGCTTGGGGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTATAGGTCCGGTATTACCCATAAGACCAGGGGGGACAGTCATGAAAGGGATTATGACTATGGTCGGCATAGTTATGATTCTGATTATGACAGAGGTGGTAGGAGAGAGGGCAATTGGAGGCGTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTTTAAGTAGGGAAAGAGAAATGAGTCCATATAGAAGGCATGAGCGTTCTAGATCTCGGTCTCGATCTCATGGGCATGATGATCATCCCAGATCAAGGTCACCTAGAAGTCGAAGCCATGGCCGAAGTCATCGAGAGGACAGCTATGATGATGGAAGGTATGAGAGAACTGATAAGCGAAGAGACAGGGATGAGAAATGCCAGAGAGAGCATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACCACTGAGGAAGATCTATACCAGATCCTTGCTGAATGGGGACCTCTTCGTCATGTCCGTGTGATCAAAGAACGTAATTCCGGCATTTCCCGTGGATTTGCTTTTATTGATTTCCCTTCCGTGGGAGCAGCTCGTATTATGATGGACAAACTCGGGGACAATGGGCATGTGGTGGATGGCAGGAAACTATTTTTTGAGTACAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGACAGTACTGGGAAATCTGGCCATGCTAACCATAAAAGCATCACTGTGCCATCTGATTGGATGTGTATCAGCTGTGGATATGTTAATTTTGCACGAAGAACATCCTGCTTTCAGTGTAATGAGGCACGAACTGAGGATGCTCCCGCAGCAGATATTTCTTCATCCAATCAAATGACAGGAAAGAAAGGATCAGAGGCTGGTCCTACTCATGTTTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAATTTTCCAAACATGCTCCTATCAAGGATCTACGTCTTGTCAGAGACAAATTCACTCATGTTTCACGGGGATTTGCGTTTGTACACTTCCATTCGGTGGAAGATGCTACGAAAGCTCTTGAAGCAACAAATGGAACACCACTTGAAAGGAATGGGCAGATTTTAAGAGTAGCATATGCAAAAAGCATTCTTGGTCCAGGATCAGGCATGTCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAGGAATATAATCCAGACGACAAACAATCCACGGGAGGGAAGGAGCAAAGTGGCGGGGATTTAAAAGCAGAAAAAGATGGTTTGGCTCCACAAACTGGTTTTGTATGGGATGAGGCATCCGGTTACTACTATGATGCTTCTTCCGGGTTCTACTATGATGGAAATACAGGTCTCTATTATGATGGTAACAATGGGATTTGGTATTCTTATGATCACCAAACTCTGCAGTACATCCCTTGCACTGATCAGAATGGCATCAAAGAATCTGCTAACCAATCTCAGCTTTCGAAGGCATCAGACGGTTCAAGTACCAAAAAAGTAGTCATCTCTGCACCAGCTACAACCTCAGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAACAGCAGCGATAGCTGCAGAGAGAAAAGAAAAGGAAAAGTCCAAAGAGATCAAGTTGGCATCAAAGAGCAGTATTTTGGCTAACAAGAAGAAAATGAGTAATGTATTGACTATGTGGAAGCAGAGGAGTCATGAAGGGCAAGTAACCCGTGTAGCTCTAGATGATAACCAGCCAAGTGCACCTGCTAATGATAGACTGGTTTCTTCTGTTCCATCTACAAAGACAAAGTCTAAAATTGATGTACCAACCAAAAATGAGAATACTATATCTAGCTCAGGGGTTACCGCCAATGTTTCTACTGCAGATACTCTTGGTTTAGAGTCTTCAGTCATGCCAAGGCCTGTGGGCAACAGTATAGGAGGGACACTGATGGGTGTGATAAGGGGATCTGGAAGAACTGTAGTAAAATCAGATACATCCTTTTCAGCATCTGGTGGAGTTTCCGCACCTTCAACTTCTGCTGCATGCATAGCAGGTTCTTCTGCATCAACAGATTCGGATATCTCCACTGTTTTGACACCCTTCAGAACTGATGCATCGGCACTAGGTTCTTATACACCACCTGTGGCTGCTGGAAGTGGCAAGAGAAGATTCTCTGAAATGCCAGCTTCTGCTCATAAAGAACCTCATACTGGATACAGGGATCGTGCGGCTGAAAGGAGGAGCTTGTATGGCTCGTCATCTTCTTTCGGAGATGATTTGCCTGAACATGGTTTTGGGGAGTCAAATCGAGACTCGGCATTGAGGAAGGGTTCTTTTGATTCAATGCCTTTCCCCCCTGGTGTTGGTGGAGGACGTGGGACCGGAGATGCAACCATTGACAGTTACGAGGTTATTACAGCCGACAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAGCATGGGCTGGCACGAAGGCTCGGTATCAACTTCTTCTTTTGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1009

Amino Acids

111.48

Weight (kDa)

6.83

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	292 - 362	1.6e-11	RNA recognition motif
RRM_1	PF00076	453 - 518	2.5e-17	RNA recognition motif
OCRE	PF17780	600 - 648	1.7e-17	OCRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1115, 2281
AasI	GACNNNNNNGTC	1 cut(s)	948
Acc36I	ACCTGC	3 cut(s)	1115, 2281, 2555
AccB1I	GGYRCC	1 cut(s)	1702
AccB7I	CCANNNNNTGG	2 cut(s)	1504, 1802
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
AcoI	YGGCCR	3 cut(s)	227, 757, 1162
AcsI	RAATTY	4 cut(s)	260, 362, 1409, 1457
AcuI	CTGAAG	3 cut(s)	8, 2400, 2599
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1937, 2017, 2334
AfeI	AGCGCT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	237, 432, 1529, 1553, 2013, 2544, 2856
AhdI	GACNNNNNGTC	1 cut(s)	484
AjiI	CACGTC	2 cut(s)	446, 2888
AjnI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
AjuI	GAANNNNNNNTTGG	2 cut(s)	2790, 2822
Alw21I	GWGCWC	1 cut(s)	2272
Alw26I	GTCTC	6 cut(s)	280, 702, 813, 1446, 1883, 2817
Alw44I	GTGCAC	1 cut(s)	2268
AlwNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
Ama87I	CYCGRG	1 cut(s)	1052
Aor13HI	TCCGGA	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	5 cut(s)	227, 757, 858, 1162, 2429
ApaLI	GTGCAC	1 cut(s)	2268
ApoI	RAATTY	4 cut(s)	260, 362, 1409, 1457
ArsI	GACNNNNNNTTYG	4 cut(s)	2013, 2045, 2303, 2335
Asp700I	GAANNNNTTC	1 cut(s)	261
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	50, 1404
AspS9I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
AsuC2I	CCSGG	1 cut(s)	1852
AsuHPI	GGTGA	2 cut(s)	729, 1913
AsuII	TTCGAA	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	1705, 2272
BalI	TGGCCA	2 cut(s)	229, 1164
BamHI	GGATCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	1702
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	3 cut(s)	14, 905, 2406
Bbv12I	GWGCWC	1 cut(s)	2272
BbvCI	CCTCAGC	1 cut(s)	2053
BciT130I	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BciVI	GTATCC	1 cut(s)	2720
BclI	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
BcnI	CCSGG	1 cut(s)	1852
BcoDI	GTCTC	6 cut(s)	280, 702, 813, 1446, 1883, 2817
BfaI	CTAG	6 cut(s)	282, 687, 741, 2249, 2361, 2636
BfmI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	3 cut(s)	1115, 2281, 2555
BfuI	GTATCC	1 cut(s)	2720
BglII	AGATCT	2 cut(s)	689, 913
BlnI	CCTAGG	1 cut(s)	281
BmcAI	AGTACT	1 cut(s)	1150
Bme1390I	CCNGG	7 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871
Bme18I	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	1052
BmgBI	CACGTC	2 cut(s)	446, 2888
BmgT120I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
BmiI	GGNNCC	7 cut(s)	279, 411, 861, 942, 1704, 1794, 2893
BmrFI	CCNGG	7 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871
BmrI	ACTGGG	2 cut(s)	1125, 1161
BmuI	ACTGGG	2 cut(s)	1125, 1161
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	14, 905, 2406
Bpu10I	CCTNAGC	2 cut(s)	2053, 2365
Bpu14I	TTCGAA	1 cut(s)	1994
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	1852
BsaBI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BsaHI	GRCGYC	1 cut(s)	601
BsaI	GGTCTC	2 cut(s)	702, 1883
BsaJI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BsaWI	WCCGGW	5 cut(s)	8, 52, 488, 1826, 2894
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bse1I	ACTGG	6 cut(s)	1120, 1156, 1377, 1807, 2292, 2728
Bse3DI	GCAATG	1 cut(s)	2962
Bse8I	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BseDI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BseJI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseMI	GCAATG	1 cut(s)	2962
BseMII	CTCAG	5 cut(s)	897, 1266, 2000, 2067, 2379
BseNI	ACTGG	6 cut(s)	1120, 1156, 1377, 1807, 2292, 2728
BseRI	GAGGAG	2 cut(s)	2230, 2767
BseSI	GKGCMC	2 cut(s)	1705, 2272
BsgI	GTGCAG	3 cut(s)	87, 1143, 2022
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BshNI	GGYRCC	1 cut(s)	1702
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	2272
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	7 cut(s)	9, 53, 489, 981, 1827, 1851, 2895
BslFI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
BsmAI	GTCTC	6 cut(s)	280, 702, 813, 1446, 1883, 2817
BsmFI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
BsmI	GAATGC	1 cut(s)	1593
BsnI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
Bso31I	GGTCTC	2 cut(s)	702, 1883
BsoBI	CYCGRG	1 cut(s)	1052
Bsp119I	TTCGAA	1 cut(s)	1994
Bsp1286I	GDGCHC	2 cut(s)	1705, 2272
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	1489
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
BspANI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BspCNI	CTCAG	5 cut(s)	898, 1267, 1999, 2066, 2378
BspEI	TCCGGA	1 cut(s)	52
BspHI	TCATGA	5 cut(s)	73, 316, 340, 520, 2221
BspLI	GGNNCC	7 cut(s)	279, 411, 861, 942, 1704, 1794, 2893
BspMAI	CTGCAG	3 cut(s)	1935, 2110, 2395
BspMI	ACCTGC	3 cut(s)	1115, 2281, 2555
BspT104I	TTCGAA	1 cut(s)	1994
BspT107I	GGYRCC	1 cut(s)	1702
BspTNI	GGTCTC	2 cut(s)	702, 1883
BsrDI	GCAATG	1 cut(s)	2962
BsrGI	TGTACA	1 cut(s)	1489
BsrI	ACTGG	6 cut(s)	1120, 1156, 1377, 1807, 2292, 2728
BssECI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BssNI	GRCGYC	1 cut(s)	601
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	3 cut(s)	281, 754, 2426
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
Bst6I	CTCTTC	2 cut(s)	811, 951
BstACI	GRCGYC	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	1652, 1673
BstAUI	TGTACA	1 cut(s)	1489
BstBI	TTCGAA	1 cut(s)	1994
BstC8I	GCNNGC	3 cut(s)	2557, 2697, 2990
BstDEI	CTNAG	5 cut(s)	906, 1275, 1986, 2053, 2365
BstDSI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BstEII	GGTNACC	2 cut(s)	735, 2371
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 1404
BstMAI	GTCTC	6 cut(s)	280, 702, 813, 1446, 1883, 2817
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BstNSI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
BstPAI	GACNNNNGTC	1 cut(s)	540
BstPI	GGTNACC	2 cut(s)	735, 2371
BstSCI	CCNGG	7 cut(s)	412, 506, 1603, 1641, 1850, 2079, 2869
BstSFI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
BstSLI	GKGCMC	2 cut(s)	1705, 2272
BstV2I	GAAGAC	3 cut(s)	14, 905, 2406
BstX2I	RGATCY	8 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477
BstXI	CCANNNNNNTGG	1 cut(s)	1200
BstYI	RGATCY	8 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477
BsuI	GTATCC	1 cut(s)	2720
BsuRI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BtgI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BtrI	CACGTC	2 cut(s)	446, 2888
BtsIMutI	CAGTG	7 cut(s)	397, 903, 1185, 1262, 1947, 2456, 2598
BveI	ACCTGC	3 cut(s)	1115, 2281, 2555
Cac8I	GCNNGC	3 cut(s)	2557, 2697, 2990
CaiI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
CciI	TCATGA	5 cut(s)	73, 316, 340, 520, 2221
CfoI	GCGC	2 cut(s)	50, 1404
Cfr13I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
CspCI	CAANNNNNGTGG	2 cut(s)	2415, 2450
CviQI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
DdeI	CTNAG	5 cut(s)	906, 1275, 1986, 2053, 2365
DraI	TTTAAA	1 cut(s)	1770
DrdI	GACNNNNNNGTC	1 cut(s)	948
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	948
EaeI	YGGCCR	3 cut(s)	227, 757, 1162
Eam1104I	CTCTTC	2 cut(s)	811, 951
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	2 cut(s)	811, 951
Eco130I	CCWWGG	3 cut(s)	281, 754, 2426
Eco147I	AGGCCT	1 cut(s)	2431
Eco31I	GGTCTC	2 cut(s)	702, 1883
Eco32I	GATATC	1 cut(s)	2593
Eco47I	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
Eco47III	AGCGCT	1 cut(s)	49
Eco57I	CTGAAG	3 cut(s)	8, 2400, 2599
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	2 cut(s)	735, 2371
EcoO109I	RGGNCCY	1 cut(s)	941
EcoO65I	GGTNACC	2 cut(s)	735, 2371
EcoRII	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
EcoRV	GATATC	1 cut(s)	2593
EcoT14I	CCWWGG	3 cut(s)	281, 754, 2426
EcoT22I	ATGCAT	3 cut(s)	466, 2561, 2629
ErhI	CCWWGG	3 cut(s)	281, 754, 2426
FaqI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
FauI	CCCGC	2 cut(s)	1294, 1754
FauNDI	CATATG	3 cut(s)	103, 466, 1582
FbaI	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
FspBI	CTAG	6 cut(s)	282, 687, 741, 2249, 2361, 2636
GlaI	GCGC	2 cut(s)	49, 1403
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
HapII	CCGG	7 cut(s)	9, 53, 489, 981, 1827, 1851, 2895
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	50, 1404
Hin1I	GRCGYC	1 cut(s)	601
Hin6I	GCGC	2 cut(s)	48, 1402
HinP1I	GCGC	2 cut(s)	48, 1402
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HpaII	CCGG	7 cut(s)	9, 53, 489, 981, 1827, 1851, 2895
HphI	GGTGA	2 cut(s)	729, 1913
Hpy166II	GTNNAC	4 cut(s)	397, 1370, 1492, 2270
Hpy8I	GTNNAC	4 cut(s)	397, 1370, 1492, 2270
Hpy99I	CGWCG	1 cut(s)	606
HpyCH4IV	ACGT	4 cut(s)	445, 973, 1441, 2887
HpyF3I	CTNAG	5 cut(s)	906, 1275, 1986, 2053, 2365
HpySE526I	ACGT	4 cut(s)	445, 973, 1441, 2887
Hsp92I	GRCGYC	1 cut(s)	601
HspAI	GCGC	2 cut(s)	48, 1402
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
LmnI	GCTCC	7 cut(s)	55, 1025, 1288, 1429, 1750, 1798, 2754
MaeI	CTAG	6 cut(s)	282, 687, 741, 2249, 2361, 2636
MaeII	ACGT	4 cut(s)	445, 973, 1441, 2887
MaeIII	GTNAC	9 cut(s)	248, 614, 626, 735, 1829, 1892, 2233, 2371, 2915
MfeI	CAATTG	3 cut(s)	592, 1656, 2943
MflI	RGATCY	8 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477
MhlI	GDGCHC	2 cut(s)	1705, 2272
MlsI	TGGCCA	2 cut(s)	229, 1164
MluNI	TGGCCA	2 cut(s)	229, 1164
MlyI	GAGTC	5 cut(s)	670, 2227, 2420, 2819, 2822
MmeI	TCCRAC	1 cut(s)	1675
Mox20I	TGGCCA	2 cut(s)	229, 1164
Mph1103I	ATGCAT	3 cut(s)	466, 2561, 2629
MroI	TCCGGA	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	2 cut(s)	229, 1164
MseI	TTAA	5 cut(s)	641, 1227, 1571, 1769, 3028
MslI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
Msp20I	TGGCCA	2 cut(s)	229, 1164
MspA1I	CMGCKG	3 cut(s)	1215, 1649, 2057
MspI	CCGG	7 cut(s)	9, 53, 489, 981, 1827, 1851, 2895
MspR9I	CCNGG	7 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871
MunI	CAATTG	3 cut(s)	592, 1656, 2943
Mva1269I	GAATGC	1 cut(s)	1593
MvaI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
NciI	CCSGG	1 cut(s)	1852
NcoI	CCATGG	1 cut(s)	754
NdeI	CATATG	3 cut(s)	103, 466, 1582
NlaIV	GGNNCC	7 cut(s)	279, 411, 861, 942, 1704, 1794, 2893
NmeAIII	GCCGAG	1 cut(s)	2807
NmuCI	GTSAC	3 cut(s)	614, 626, 735
NsiI	ATGCAT	3 cut(s)	466, 2561, 2629
NspI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
NspV	TTCGAA	1 cut(s)	1994
PaeI	GCATGC	1 cut(s)	2559
PagI	TCATGA	5 cut(s)	73, 316, 340, 520, 2221
PaqCI	CACCTGC	2 cut(s)	1115, 2281
PceI	AGGCCT	1 cut(s)	2431
PcsI	WCGNNNNNNNCGW	2 cut(s)	610, 955
PctI	GAATGC	1 cut(s)	1593
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	8 cut(s)	5, 308, 557, 608, 1970, 2585, 2682, 2852
PflFI	GACNNNGTC	1 cut(s)	2317
PflMI	CCANNNNNTGG	2 cut(s)	1504, 1802
PfoI	TCCNGGA	1 cut(s)	1603
PleI	GAGTC	5 cut(s)	669, 2226, 2419, 2819, 2821
PpsI	GAGTC	5 cut(s)	669, 2226, 2419, 2819, 2821
PpuMI	RGGWCCY	1 cut(s)	941
PshAI	GACNNNNGTC	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
PspEI	GGTNACC	2 cut(s)	735, 2371
PspGI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
PspN4I	GGNNCC	7 cut(s)	279, 411, 861, 942, 1704, 1794, 2893
PspPI	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
PspPPI	RGGWCCY	1 cut(s)	941
PstI	CTGCAG	3 cut(s)	1935, 2110, 2395
PstNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
PsuI	RGATCY	8 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477
PsyI	GACNNNGTC	1 cut(s)	2317
PvuII	CAGCTG	3 cut(s)	1215, 1649, 2057
RsaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1937, 2017, 2334
RsaNI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
RseI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
SaqAI	TTAA	5 cut(s)	641, 1227, 1571, 1769, 3028
Sau96I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
ScaI	AGTACT	1 cut(s)	1150
SchI	GAGTC	5 cut(s)	670, 2227, 2420, 2819, 2822
ScrFI	CCNGG	7 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871
SduI	GDGCHC	2 cut(s)	1705, 2272
SfcI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
SfuI	TTCGAA	1 cut(s)	1994
SinI	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
SmiMI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SphI	GCATGC	1 cut(s)	2559
SseBI	AGGCCT	1 cut(s)	2431
SsiI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
SspMI	CTAG	6 cut(s)	282, 687, 741, 2249, 2361, 2636
StuI	AGGCCT	1 cut(s)	2431
StyD4I	CCNGG	7 cut(s)	412, 506, 1603, 1641, 1850, 2079, 2869
StyI	CCWWGG	3 cut(s)	281, 754, 2426
TaiI	ACGT	4 cut(s)	448, 976, 1444, 2890
TaqI	TCGA	5 cut(s)	700, 748, 769, 1994, 2821
TaqII	GACCGA	1 cut(s)	684
TatI	WGTACW	5 cut(s)	300, 1098, 1148, 1489, 1935
TauI	GCSGC	1 cut(s)	2744
TfiI	GAWTC	8 cut(s)	5, 308, 557, 608, 1970, 2585, 2682, 2852
Tru1I	TTAA	5 cut(s)	641, 1227, 1571, 1769, 3028
Tru9I	TTAA	5 cut(s)	641, 1227, 1571, 1769, 3028
TscAI	CASTG	7 cut(s)	397, 910, 1192, 1262, 1954, 2463, 2605
TseFI	GTSAC	3 cut(s)	614, 626, 735
Tsp45I	GTSAC	3 cut(s)	614, 626, 735
TspDTI	ATGAA	8 cut(s)	62, 90, 300, 537, 1293, 1392, 1422, 2238
TspGWI	ACGGA	3 cut(s)	323, 947, 1009
TspRI	CASTG	7 cut(s)	397, 910, 1192, 1262, 1954, 2463, 2605
Tth111I	GACNNNGTC	1 cut(s)	2317
Van91I	CCANNNNNTGG	2 cut(s)	1504, 1802
VneI	GTGCAC	1 cut(s)	2268
VpaK11BI	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
XapI	RAATTY	4 cut(s)	260, 362, 1409, 1457
XbaI	TCTAGA	2 cut(s)	686, 2248
XceI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
XmaJI	CCTAGG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	6 cut(s)	282, 687, 741, 2249, 2361, 2636
ZrmI	AGTACT	1 cut(s)	1150
Zsp2I	ATGCAT	3 cut(s)	466, 2561, 2629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.