Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Reverse (-)

50661187 .. 50669252

Gene Structure 8066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3294 bp

ATGGTGGTGGTGTGTTTTAAGAGAATTAGGATTTTGGTTATTCCGGGGAAAGGTATCCAAATTCTGAGCGATACCATCATCGGGAGCTTTGTCTGGTTTTGCTTGAAAGAAATGGATTCCGGTCGCTATGGTCTTCAGCAAGGATGGGATAATAACAGCGCTCCGGAGGGGTATGGTGCAGTTCATGAGCCAAACTTTCGGGTCGGTGGTTCATATGATGAGAGAAGGTTTATAGAGGAAAGGTACGCAAGGGACAATGTTTATCCAAGAAGCACATTCCACCGTGATGTTCTGGATAGGGATAACTACCCACCACCACCTCATGCTGTTGGTATATGGCCACATTCAAGAAGGAGAAGTTACGAAGAAGAATTTCCCATTGATAGGGAACCTAGGAGACATGAGAAACAGTACATGGATTCATATCATGAGATGGATAACCTCCGTGATCATGAGATTGATACATTTCAGGAATTTGATAAATTACGGGATGGCTATCACAGTGTTGACAGCTATCGGGATCCTGGGTTTGAGAGGACTTCAAGGCTTGGGGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTATAGGTCCGGTATTACCCATAAGACCAGGGGGGACAGTCGTGAAAGGGATTATGACTATGGTCGGCATAGTTATGATTCTGATTATGACAGAGGTAGTAGGAGAGAGGGCAATTGGAGGCGTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTTTAAGTAGGGAAAGAGAAATGAGTCCATATAGAAGGCATGAGCGTTCTAGATCTCGGTCTCGATCTCATGGGCATGATGATCATCCCAGATCAAGGTCACCTAGAAGTCGAAGCCATGGCCGGAGTCATCGAGAGGACAGCTATGATGATGGAAGGTATGAGAGAACTGATAAGCGAAGAGACAGGGATGAGAAACGCCAGAGAGAGCATTATTCTGTGGCCCCGTCTGCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACCACTGAGGAAGATCTATACCAGATCCTTGCTGAATGGGGACCTCTTCGTCATGTCCGTGTGATCAAAGAACGTAATTCTGGCATTTCCCGTGGATTTGCTTTTATTGATTTCCCTTCCGTGGAAGCAGCTCGTATTATGATGGACAAACTCGGGGACAATGGGCATGTGGTGGATGGCAGGAAACTATTTTTTGAGTACAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGACAGTGCTGGGAAATCTGGCCATGCTAACCATAAAAGCATCACTGTGCCATCTGATTGGATGTGTATCAGCTGTGGATATGTTAATTTTGCACGAAGAACATCCTGCTTTCAGTGTAATGAGGCACGAACTGAGGATGCTCCCGCAGCAGATATTTCTTCATCCAATCAAATGACAGGAAAGAAAGGATCAGAGGCTGGTCCTACTCATGTTTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAATTTTCCAAACATGCTCCTATCAAGGATCTACGTCTTGTCAGAGACAAATTCACTCATGTTTCACGGGGATTTGCGTTTGTACACTTCCATTCGGTGGAAGATGCTACGAAAGCTCTTGAAGCAACAAATGGAACACCACTTGAAAGGAATGGGCAGATTTTAAGAGTAGCATATGCAAAAAGCATTCTTGGTCCAGGATCAGGCATGTCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAGGAATATAATCCAGATGACAAACAATCCACAGGAGGGAAGGAGCAAAGTGGCAGGGATTTAAAAGCAGAAAAAGATGGTTTGGCTCCACAAACTGGTTTCGTATGGGATGAGGCATCCGGTTACTACTATGATGCTTCTTCCGGGTTCTACTATGATGGAAATACAGGTCTCTATTATGATGGTAACAATGGGATTTGGTATTCTTATGATCACCAAACTCTGCAGTACATCCCTTGCACTGATCAGAATGGCATCAAAGAATCTGCTAACCAATCTCAGCTTTCAAAGGCATCAGACGGTTCAAGTACCAAAAAAGTAGTCATCTCTGCACCAGCTACAACCTCAGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAACAGCAGCGATAGCTGCTGAGAGAAAAGAAAAGGAAAAGTCCAAAGAGATCAAGTTGGCATCAAAGAGCAGTATTTTGGCTAACAAGAAGAAAATGAGTAATGTATTGACTATGTGGAAGCAGAGGAGTCATGAAGGGCAAGTAACCCGTGTAGCTCTAGATGATAACCAGCCAAGTGCACCTGCTAATGATAGACTGGTTTCCTCTGTTCCATCTACAAAGACAAAGTCTAAAATTGATGTACCAACCAAAAATGAGAATACTATATCTAGCTCAGGGGTTACCGCCAATGTTTCTACTGCAGATACTCTTGGTTTAGAGTCTTCAGTCATGCCAAGGCCTGTGGGCAACAGTATAGGAGGGACACTGATGGGAGTGATAAGGGGATCTGGAAGAACTGTAGTAAAATCAGATACATCCTTTTCAGCATCTGGTGGAGTTTCCGCACCTTCAACTTCTGCTGCATGCATAGCAGGTTCTTCTGTATCAACAGATTCGGATATCTCCACTGTTTTGACACCCTTCAGAACTGATGCATCGGCACTAGGTTCTTATACACCACCTGTGGCTGCTGGGAGTGGCAAGAGAAGATTCTCTGAAATGCCAGCTTCTGCTCATAAAGAACCTCATACTGGATACAGGGATCGTGCGGCTGAAAGGAGGAGCTTGTATGGCTCGTCATCTTCTTTTGGAGATGATTTGCCTGAACATGGTTTTGGGGAGTCAAATCGAGACTCGGCATTGAGGAAGGGTTCTTTTGATTCAATGCCTTTCCCCCCGGGTGTTGGTGGAGGACGTGGAACCGGAGATGCAACCATTGACAGTTACGAGGTTATTACAGCCGACAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAGCATGGGCTGGCATGAAGGCTTGGGTTTAGGAAGAGATGGGAGTGGAATGGTGGAACCGGTGCAGGCTCAGAGTGTGGAAAGGAGAGCCGGACTTGGGAGTCAGCAGAAGAAGTTAGATCCGGCTCTTGAGGCTCAGGCTGGAGATAGTTATAAAACTCTCATTCACAAGAAGGCACTGGCTAGGTTCCGGGAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1098

Amino Acids

121.53

Weight (kDa)

8.26

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	329 - 399	1.7e-12	RNA recognition motif
RRM_1	PF00076	490 - 555	2.8e-17	RNA recognition motif
OCRE	PF17780	637 - 685	1.9e-17	OCRE domain
G-patch	PF01585	1022 - 1063	3.8e-14	G-patch domain
G-patch_2	PF12656	1022 - 1067	1.5e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3243
AarI	CACCTGC	2 cut(s)	1226, 2392
AasI	GACNNNNNNGTC	2 cut(s)	1059, 3189
Acc36I	ACCTGC	3 cut(s)	1226, 2392, 2666
AccB1I	GGYRCC	1 cut(s)	1813
AccB7I	CCANNNNNTGG	2 cut(s)	1615, 1913
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	4 cut(s)	1398, 2487, 2646, 2852
AcoI	YGGCCR	3 cut(s)	338, 868, 1273
AcsI	RAATTY	5 cut(s)	60, 371, 473, 1520, 1568
AcuI	CTGAAG	3 cut(s)	119, 2511, 2710
AcyI	GRCGYC	1 cut(s)	712
AfaI	GTAC	7 cut(s)	245, 413, 1211, 1602, 2048, 2128, 2445
AfeI	AGCGCT	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	3148
AgsI	TTSAA	9 cut(s)	106, 348, 543, 1640, 1664, 2106, 2124, 2655, 2967
AhdI	GACNNNNNGTC	1 cut(s)	595
AjiI	CACGTC	2 cut(s)	557, 2999
AjnI	CCWGG	5 cut(s)	523, 617, 1714, 1752, 2190
AjuI	GAANNNNNNNTTGG	2 cut(s)	2901, 2933
Alw21I	GWGCWC	1 cut(s)	2383
Alw26I	GTCTC	6 cut(s)	391, 813, 924, 1557, 1994, 2928
Alw44I	GTGCAC	1 cut(s)	2379
AlwNI	CAGNNNCTG	4 cut(s)	1451, 1763, 2633, 2813
Ama87I	CYCGRG	2 cut(s)	1163, 2980
Aor13HI	TCCGGA	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	5 cut(s)	338, 868, 969, 1273, 2540
ApaLI	GTGCAC	1 cut(s)	2379
ApoI	RAATTY	5 cut(s)	60, 371, 473, 1520, 1568
ArsI	GACNNNNNNTTYG	4 cut(s)	2124, 2156, 2414, 2446
AsiGI	ACCGGT	1 cut(s)	3148
Asp700I	GAANNNNTTC	1 cut(s)	372
AspA2I	CCTAGG	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	161, 1515
AspS9I	GGNCC	5 cut(s)	597, 970, 1052, 1454, 1712
AsuC2I	CCSGG	5 cut(s)	45, 1963, 2981, 2982, 3281
AsuHPI	GGTGA	2 cut(s)	840, 2024
AvaI	CYCGRG	2 cut(s)	1163, 2980
AvaII	GGWCC	4 cut(s)	597, 1052, 1454, 1712
AvrII	CCTAGG	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	1816, 2383
BalI	TGGCCA	2 cut(s)	340, 1275
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	1813
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	3 cut(s)	125, 1016, 2517
Bbv12I	GWGCWC	1 cut(s)	2383
BbvCI	CCTCAGC	1 cut(s)	2164
BciT130I	CCWGG	5 cut(s)	525, 619, 1716, 1754, 2192
BciVI	GTATCC	2 cut(s)	65, 2831
BclI	TGATCA	5 cut(s)	448, 829, 1074, 2029, 2062
BcnI	CCSGG	5 cut(s)	45, 1963, 2981, 2982, 3281
BcoDI	GTCTC	6 cut(s)	391, 813, 924, 1557, 1994, 2928
BfaI	CTAG	7 cut(s)	393, 798, 852, 2360, 2472, 2747, 3273
BfmI	CTRYAG	4 cut(s)	592, 2042, 2502, 2601
BfoI	RGCGCY	1 cut(s)	162
BfuAI	ACCTGC	3 cut(s)	1226, 2392, 2666
BfuI	GTATCC	2 cut(s)	65, 2831
BglII	AGATCT	2 cut(s)	800, 1024
BlnI	CCTAGG	1 cut(s)	392
Bme18I	GGWCC	4 cut(s)	597, 1052, 1454, 1712
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmeT110I	CYCGRG	2 cut(s)	1163, 2980
BmgBI	CACGTC	2 cut(s)	557, 2999
BmgT120I	GGNCC	5 cut(s)	597, 970, 1052, 1454, 1712
BmiI	GGNNCC	9 cut(s)	390, 522, 972, 1053, 1815, 1905, 3004, 3147, 3278
BmrI	ACTGGG	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	1236
BoxI	GACNNNNGTC	1 cut(s)	651
BpiI	GAAGAC	3 cut(s)	125, 1016, 2517
BpmI	CTGGAG	1 cut(s)	3252
Bpu10I	CCTNAGC	3 cut(s)	2164, 2476, 3225
BpuEI	CTTGAG	1 cut(s)	3239
BpuMI	CCSGG	5 cut(s)	45, 1963, 2981, 2982, 3281
BsaBI	GATNNNNATC	4 cut(s)	423, 495, 831, 1319
BsaHI	GRCGYC	1 cut(s)	712
BsaI	GGTCTC	2 cut(s)	813, 1994
BsaWI	WCCGGW	6 cut(s)	119, 163, 599, 1937, 3005, 3148
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bse118I	RCCGGY	1 cut(s)	3148
Bse1I	ACTGG	6 cut(s)	1231, 1488, 1918, 2403, 2839, 3273
Bse3DI	GCAATG	1 cut(s)	3073
Bse8I	GATNNNNATC	4 cut(s)	423, 495, 831, 1319
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	5 cut(s)	525, 619, 1716, 1754, 2192
BseJI	GATNNNNATC	4 cut(s)	423, 495, 831, 1319
BseMI	GCAATG	1 cut(s)	3073
BseMII	CTCAG	9 cut(s)	56, 1008, 1377, 2111, 2178, 2211, 2490, 3173, 3239
BseNI	ACTGG	6 cut(s)	1231, 1488, 1918, 2403, 2839, 3273
BseRI	GAGGAG	2 cut(s)	2341, 2878
BseSI	GKGCMC	2 cut(s)	1816, 2383
BseYI	CCCAGC	2 cut(s)	1262, 2774
BsgI	GTGCAG	4 cut(s)	198, 1254, 2133, 3173
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	340, 870, 971, 1275, 2542
BshNI	GGYRCC	1 cut(s)	1813
BshTI	ACCGGT	1 cut(s)	3148
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	2383
BsiHKCI	CYCGRG	2 cut(s)	1163, 2980
BslFI	GGGAC	6 cut(s)	266, 567, 638, 1065, 1181, 2578
BsmAI	GTCTC	6 cut(s)	391, 813, 924, 1557, 1994, 2928
BsmFI	GGGAC	6 cut(s)	266, 567, 638, 1065, 1181, 2578
BsmI	GAATGC	1 cut(s)	1704
BsnI	GGCC	5 cut(s)	340, 870, 971, 1275, 2542
Bso31I	GGTCTC	2 cut(s)	813, 1994
BsoBI	CYCGRG	2 cut(s)	1163, 2980
Bsp1286I	GDGCHC	2 cut(s)	1816, 2383
Bsp13I	TCCGGA	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	1600
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	4 cut(s)	1398, 2487, 2646, 2852
BspANI	GGCC	5 cut(s)	340, 870, 971, 1275, 2542
BspCNI	CTCAG	9 cut(s)	57, 1009, 1378, 2110, 2177, 2212, 2489, 3172, 3238
BspEI	TCCGGA	1 cut(s)	163
BspHI	TCATGA	4 cut(s)	184, 427, 451, 2332
BspLI	GGNNCC	9 cut(s)	390, 522, 972, 1053, 1815, 1905, 3004, 3147, 3278
BspMAI	CTGCAG	2 cut(s)	2046, 2506
BspMI	ACCTGC	3 cut(s)	1226, 2392, 2666
BspT107I	GGYRCC	1 cut(s)	1813
BspTNI	GGTCTC	2 cut(s)	813, 1994
BsrDI	GCAATG	1 cut(s)	3073
BsrFI	RCCGGY	1 cut(s)	3148
BsrGI	TGTACA	1 cut(s)	1600
BsrI	ACTGG	6 cut(s)	1231, 1488, 1918, 2403, 2839, 3273
BssAI	RCCGGY	1 cut(s)	3148
BssNI	GRCGYC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	3 cut(s)	392, 865, 2537
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	5 cut(s)	525, 619, 1716, 1754, 2192
Bst6I	CTCTTC	3 cut(s)	922, 1062, 3118
BstACI	GRCGYC	1 cut(s)	712
BstAPI	GCANNNNNTGC	2 cut(s)	1763, 1784
BstAUI	TGTACA	1 cut(s)	1600
BstC8I	GCNNGC	4 cut(s)	2668, 2808, 3101, 3156
BstDEI	CTNAG	9 cut(s)	65, 1017, 1386, 2097, 2164, 2220, 2476, 3159, 3225
BstDSI	CCRYGG	3 cut(s)	865, 1102, 1131
BstEII	GGTNACC	2 cut(s)	846, 2482
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 1515
BstMAI	GTCTC	6 cut(s)	391, 813, 924, 1557, 1994, 2928
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	5 cut(s)	525, 619, 1716, 1754, 2192
BstNSI	RCATGY	4 cut(s)	1181, 1535, 1729, 2670
BstPAI	GACNNNNGTC	1 cut(s)	651
BstPI	GGTNACC	2 cut(s)	846, 2482
BstSFI	CTRYAG	4 cut(s)	592, 2042, 2502, 2601
BstSLI	GKGCMC	2 cut(s)	1816, 2383
BstV2I	GAAGAC	3 cut(s)	125, 1016, 2517
BstX2I	RGATCY	9 cut(s)	520, 800, 1024, 1035, 1241, 1546, 1733, 2588, 3208
BstXI	CCANNNNNNTGG	1 cut(s)	1311
BstYI	RGATCY	9 cut(s)	520, 800, 1024, 1035, 1241, 1546, 1733, 2588, 3208
BsuI	GTATCC	2 cut(s)	65, 2831
BsuRI	GGCC	5 cut(s)	340, 870, 971, 1275, 2542
BtgI	CCRYGG	3 cut(s)	865, 1102, 1131
BtrI	CACGTC	2 cut(s)	557, 2999
BtsIMutI	CAGTG	9 cut(s)	508, 1014, 1264, 1296, 1373, 2058, 2567, 2709, 3266
BveI	ACCTGC	3 cut(s)	1226, 2392, 2666
Cac8I	GCNNGC	4 cut(s)	2668, 2808, 3101, 3156
CaiI	CAGNNNCTG	4 cut(s)	1451, 1763, 2633, 2813
CciI	TCATGA	4 cut(s)	184, 427, 451, 2332
CfoI	GCGC	2 cut(s)	161, 1515
Cfr10I	RCCGGY	1 cut(s)	3148
Cfr13I	GGNCC	5 cut(s)	597, 970, 1052, 1454, 1712
Cfr9I	CCCGGG	1 cut(s)	2980
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	7 cut(s)	244, 412, 1210, 1601, 2047, 2127, 2444
CspAI	ACCGGT	1 cut(s)	3148
CspCI	CAANNNNNGTGG	2 cut(s)	2526, 2561
CviQI	GTAC	7 cut(s)	244, 412, 1210, 1601, 2047, 2127, 2444
DdeI	CTNAG	9 cut(s)	65, 1017, 1386, 2097, 2164, 2220, 2476, 3159, 3225
DraI	TTTAAA	1 cut(s)	1881
DrdI	GACNNNNNNGTC	2 cut(s)	1059, 3189
DriI	GACNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	2 cut(s)	1059, 3189
EaeI	YGGCCR	3 cut(s)	338, 868, 1273
Eam1104I	CTCTTC	3 cut(s)	922, 1062, 3118
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	3 cut(s)	922, 1062, 3118
Eco130I	CCWWGG	3 cut(s)	392, 865, 2537
Eco147I	AGGCCT	1 cut(s)	2542
Eco31I	GGTCTC	2 cut(s)	813, 1994
Eco32I	GATATC	1 cut(s)	2704
Eco47I	GGWCC	4 cut(s)	597, 1052, 1454, 1712
Eco47III	AGCGCT	1 cut(s)	160
Eco57I	CTGAAG	3 cut(s)	119, 2511, 2710
Eco88I	CYCGRG	2 cut(s)	1163, 2980
Eco91I	GGTNACC	2 cut(s)	846, 2482
EcoO109I	RGGNCCY	1 cut(s)	1052
EcoO65I	GGTNACC	2 cut(s)	846, 2482
EcoRII	CCWGG	5 cut(s)	523, 617, 1714, 1752, 2190
EcoRV	GATATC	1 cut(s)	2704
EcoT14I	CCWWGG	3 cut(s)	392, 865, 2537
EcoT22I	ATGCAT	3 cut(s)	577, 2672, 2740
ErhI	CCWWGG	3 cut(s)	392, 865, 2537
FaqI	GGGAC	6 cut(s)	266, 567, 638, 1065, 1181, 2578
FauI	CCCGC	1 cut(s)	1405
FauNDI	CATATG	3 cut(s)	214, 577, 1693
FbaI	TGATCA	5 cut(s)	448, 829, 1074, 2029, 2062
FspBI	CTAG	7 cut(s)	393, 798, 852, 2360, 2472, 2747, 3273
GlaI	GCGC	2 cut(s)	160, 1514
GsaI	CCCAGC	2 cut(s)	1266, 2778
GsuI	CTGGAG	1 cut(s)	3252
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	5 cut(s)	340, 870, 971, 1275, 2542
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	2 cut(s)	161, 1515
Hin1I	GRCGYC	1 cut(s)	712
Hin6I	GCGC	2 cut(s)	159, 1513
HinP1I	GCGC	2 cut(s)	159, 1513
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HphI	GGTGA	2 cut(s)	840, 2024
Hpy166II	GTNNAC	4 cut(s)	508, 1481, 1603, 2381
Hpy8I	GTNNAC	4 cut(s)	508, 1481, 1603, 2381
Hpy99I	CGWCG	1 cut(s)	717
HpyCH4IV	ACGT	4 cut(s)	556, 1084, 1552, 2998
HpyF3I	CTNAG	9 cut(s)	65, 1017, 1386, 2097, 2164, 2220, 2476, 3159, 3225
HpySE526I	ACGT	4 cut(s)	556, 1084, 1552, 2998
Hsp92I	GRCGYC	1 cut(s)	712
HspAI	GCGC	2 cut(s)	159, 1513
Kpn2I	TCCGGA	1 cut(s)	163
Ksp22I	TGATCA	5 cut(s)	448, 829, 1074, 2029, 2062
LmnI	GCTCC	7 cut(s)	84, 166, 1399, 1540, 1861, 1909, 2865
MaeI	CTAG	7 cut(s)	393, 798, 852, 2360, 2472, 2747, 3273
MaeII	ACGT	4 cut(s)	556, 1084, 1552, 2998
MaeIII	GTNAC	9 cut(s)	359, 725, 737, 846, 1940, 2003, 2344, 2482, 3026
MfeI	CAATTG	3 cut(s)	703, 1767, 3054
MflI	RGATCY	9 cut(s)	520, 800, 1024, 1035, 1241, 1546, 1733, 2588, 3208
MhlI	GDGCHC	2 cut(s)	1816, 2383
MlsI	TGGCCA	2 cut(s)	340, 1275
MluNI	TGGCCA	2 cut(s)	340, 1275
MlyI	GAGTC	7 cut(s)	781, 883, 2338, 2531, 2930, 2933, 3199
MmeI	TCCRAC	1 cut(s)	1786
Mox20I	TGGCCA	2 cut(s)	340, 1275
Mph1103I	ATGCAT	3 cut(s)	577, 2672, 2740
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	2 cut(s)	340, 1275
MseI	TTAA	5 cut(s)	18, 752, 1338, 1682, 1880
MslI	CAYNNNNRTG	5 cut(s)	285, 663, 822, 1068, 1298
Msp20I	TGGCCA	2 cut(s)	340, 1275
MspA1I	CMGCKG	3 cut(s)	1326, 1760, 2168
MunI	CAATTG	3 cut(s)	703, 1767, 3054
Mva1269I	GAATGC	1 cut(s)	1704
MvaI	CCWGG	5 cut(s)	525, 619, 1716, 1754, 2192
NciI	CCSGG	5 cut(s)	45, 1963, 2981, 2982, 3281
NcoI	CCATGG	1 cut(s)	865
NdeI	CATATG	3 cut(s)	214, 577, 1693
NlaIV	GGNNCC	9 cut(s)	390, 522, 972, 1053, 1815, 1905, 3004, 3147, 3278
NmeAIII	GCCGAG	1 cut(s)	2918
NmuCI	GTSAC	3 cut(s)	725, 737, 846
NsiI	ATGCAT	3 cut(s)	577, 2672, 2740
NspI	RCATGY	4 cut(s)	1181, 1535, 1729, 2670
PaeI	GCATGC	1 cut(s)	2670
PagI	TCATGA	4 cut(s)	184, 427, 451, 2332
PaqCI	CACCTGC	2 cut(s)	1226, 2392
PceI	AGGCCT	1 cut(s)	2542
PcsI	WCGNNNNNNNCGW	2 cut(s)	721, 1066
PctI	GAATGC	1 cut(s)	1704
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	8 cut(s)	116, 419, 668, 719, 2081, 2696, 2793, 2963
PflFI	GACNNNGTC	1 cut(s)	2428
PflMI	CCANNNNNTGG	2 cut(s)	1615, 1913
PfoI	TCCNGGA	2 cut(s)	1714, 3279
PinAI	ACCGGT	1 cut(s)	3148
PleI	GAGTC	7 cut(s)	780, 882, 2337, 2530, 2930, 2932, 3198
PpsI	GAGTC	7 cut(s)	780, 882, 2337, 2530, 2930, 2932, 3198
PpuMI	RGGWCCY	1 cut(s)	1052
PshAI	GACNNNNGTC	1 cut(s)	651
PsiI	TTATAA	1 cut(s)	3243
Psp5II	RGGWCCY	1 cut(s)	1052
Psp6I	CCWGG	5 cut(s)	523, 617, 1714, 1752, 2190
PspEI	GGTNACC	2 cut(s)	846, 2482
PspFI	CCCAGC	2 cut(s)	1262, 2774
PspGI	CCWGG	5 cut(s)	523, 617, 1714, 1752, 2190
PspN4I	GGNNCC	9 cut(s)	390, 522, 972, 1053, 1815, 1905, 3004, 3147, 3278
PspPI	GGNCC	5 cut(s)	597, 970, 1052, 1454, 1712
PspPPI	RGGWCCY	1 cut(s)	1052
PstI	CTGCAG	2 cut(s)	2046, 2506
PstNI	CAGNNNCTG	4 cut(s)	1451, 1763, 2633, 2813
PsuI	RGATCY	9 cut(s)	520, 800, 1024, 1035, 1241, 1546, 1733, 2588, 3208
PsyI	GACNNNGTC	1 cut(s)	2428
PvuII	CAGCTG	3 cut(s)	1326, 1760, 2168
RsaI	GTAC	7 cut(s)	245, 413, 1211, 1602, 2048, 2128, 2445
RsaNI	GTAC	7 cut(s)	244, 412, 1210, 1601, 2047, 2127, 2444
RseI	CAYNNNNRTG	5 cut(s)	285, 663, 822, 1068, 1298
SaqAI	TTAA	5 cut(s)	18, 752, 1338, 1682, 1880
Sau96I	GGNCC	5 cut(s)	597, 970, 1052, 1454, 1712
SchI	GAGTC	7 cut(s)	781, 883, 2338, 2531, 2930, 2933, 3199
SduI	GDGCHC	2 cut(s)	1816, 2383
SfcI	CTRYAG	4 cut(s)	592, 2042, 2502, 2601
SinI	GGWCC	4 cut(s)	597, 1052, 1454, 1712
SmaI	CCCGGG	1 cut(s)	2982
SmiMI	CAYNNNNRTG	5 cut(s)	285, 663, 822, 1068, 1298
SmlI	CTYRAG	1 cut(s)	3218
SmoI	CTYRAG	1 cut(s)	3218
SphI	GCATGC	1 cut(s)	2670
SseBI	AGGCCT	1 cut(s)	2542
SsiI	CCGC	4 cut(s)	1398, 2487, 2646, 2852
SspMI	CTAG	7 cut(s)	393, 798, 852, 2360, 2472, 2747, 3273
StuI	AGGCCT	1 cut(s)	2542
StyI	CCWWGG	3 cut(s)	392, 865, 2537
TaiI	ACGT	4 cut(s)	559, 1087, 1555, 3001
TaqI	TCGA	4 cut(s)	811, 859, 880, 2932
TaqII	GACCGA	1 cut(s)	795
TatI	WGTACW	4 cut(s)	411, 1209, 1600, 2046
TauI	GCSGC	1 cut(s)	2855
TfiI	GAWTC	8 cut(s)	116, 419, 668, 719, 2081, 2696, 2793, 2963
Tru1I	TTAA	5 cut(s)	18, 752, 1338, 1682, 1880
Tru9I	TTAA	5 cut(s)	18, 752, 1338, 1682, 1880
TscAI	CASTG	9 cut(s)	508, 1021, 1264, 1303, 1373, 2065, 2574, 2716, 3273
TseFI	GTSAC	3 cut(s)	725, 737, 846
Tsp45I	GTSAC	3 cut(s)	725, 737, 846
TspDTI	ATGAA	8 cut(s)	173, 201, 411, 1404, 1503, 1533, 2349, 3120
TspGWI	ACGGA	3 cut(s)	434, 1058, 1120
TspMI	CCCGGG	1 cut(s)	2980
TspRI	CASTG	9 cut(s)	508, 1021, 1264, 1303, 1373, 2065, 2574, 2716, 3273
Tth111I	GACNNNGTC	1 cut(s)	2428
Van91I	CCANNNNNTGG	2 cut(s)	1615, 1913
VneI	GTGCAC	1 cut(s)	2379
VpaK11BI	GGWCC	4 cut(s)	597, 1052, 1454, 1712
XapI	RAATTY	5 cut(s)	60, 371, 473, 1520, 1568
XbaI	TCTAGA	2 cut(s)	797, 2359
XceI	RCATGY	4 cut(s)	1181, 1535, 1729, 2670
XmaI	CCCGGG	1 cut(s)	2980
XmaJI	CCTAGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	7 cut(s)	393, 798, 852, 2360, 2472, 2747, 3273
Zsp2I	ATGCAT	3 cut(s)	577, 2672, 2740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.