Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00642

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Reverse (-)

27698 .. 35975

Gene Structure 8278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2988 bp

ATGGATTCCGGTCGCTATGGTCTTCAGCAAGGATGGGATAATAACAGCGCTCCGGAGGGGTATGGTGCAGTTCATGAGCCAAACTTTCGGGTCGGTGGTTCATATGATGAGAGAAGGTTTATAGAGGAAAGGTACTCAAGGGACAATGTTTATCCAAGAAGCACATTCCACCGTGAAGTTCTGGATAGGGATAACTACCCACCACCACCTCATGCTGTTGGTATATGGCCAAATTCAAGAAGGAGAAGTTACGAAGAAGAATTTCCCATTGATAGGGGACCTAGGAGACATGAGAAACAGTACATGGATTCATATCATGAGATGGATAACCTCTGTGATCATGAGATTGATACATTTCAGGAATTTGATAAATTACGGGATGGCTATCACAGTGTTGACAGCTATCGGGATCCTGGGTTTGATAGGACTTCAAGGCTTGGGGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTATAGGTCCGGTATTACCCATAAGACCAGGGGGGACAGTCGTGAAAGGGATTATGACTATGGTCGGCATAGTTATGATTCTGATTATGACAGAGGTAGTAGGAGGGAGGGCAATTGGAGGCGTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTTTAAGTAGGGAAAGAGAAATGAGTCCATATAGAAGGCATGAGCGTTCTAGATCTCGGTCTCGATCTCATGGGCATGATGATCATCCCAGATCAAGGTCACCTAGAAGTCGAAGCCATGGCCGAAGTCATCGAGAGGACAGCTATGATGATGGAAGGTATGAGAGAACTGATAAGCGAAGAGACAGGGATGAGAAACGCCAGAGAGAGCATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACCACTGAGGAAGATCTATACCAGATCCTTGCTGAATGGGGACCTCTTCGTCATGTCCGTGTGATCAAAGAGCGTAATTCTGGCATTTCCCGTGGATTTGCTTTTATTGATTTCCCTTCCGTGGGAGCAGCTCGTATTATGATGGACAAACTCGGGGACAATGGGCATGTGGTGGATGGCAGGAAACTATTTTTTGAGTACAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGACAGTACTGGGAAATCTGGCCATGCTAACCATAAAAGCATCACTGTGCCATCTGATTGGATGTGTATCAGCTGTGGATATGTTAATTTTGCACGAAGAACATCCTGCTTTCAGTGTAATGAGGCACGAACTGAGGATGCTCCCGCAGCAGATATTTCTTCATCCAATCAAATGACAGGAAAGAAAGGATCAGAGGCTGGTCCTACTCATGTTTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAATTTTCCAAACATGCTCCTATCAAGGATCTACGTCTTGTCAGAGACAAATTCACTCATGTTTCACGGGGATTTGCGTTTGTACACTTCCATTCGGTGGAAGATGCTACGAAAGCTCTTGAAGCAACAAATGGAACACCACTTGAAAGGAATGGGCAGATTTTAAGAGTAGCATATGCAAAAAGCATTCTTGGTCCAGGATCAGGCATGTCAGGATCCTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAGGAATATAATCCAGACGACAAACAATCCACGGGAGGGAAGGAGCAAAGTGGCGGGGATTTAAAAGCAGAAAAAGATGGTTTGGCTCCACAAACTGGTTTTGTATGGGATGAGGCATCCGGTTACTACTATGATGCTTCTTCCGGGTTCTACTATGATGGAAATACAGCTTCAAAGGCATCAGACGGTTCAAGTACAAAAAAAGTAGTCATCTCTGCACCAGCTACAACCTCAGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAACAGCAGCGATAGCTGCAGAGAGAAAGAAAAGGAAAAGTCCAAAGAGATCAAGTTGGCCAGAGGAGGATCATGAAGGGCAAGTAATCCGTGTAGCTCTAGATGATAACCAGCCAAGTGCACCTGCGAATGATAGACTGGTTTCTTCTGTTCCATCTACAAAGACAAAGTCTAAAATTGATGTACCAACAAAAATGAGAATACTATATCTAGCTCAGGGGTTACTGCCAATGTTTTACTGCAGTACTCTTGGTTTAGAGTCCTGTGGGCAACAGTATAGGAGGGACACTGATGGGAGTGATAAGGGATCTGGAAGAACTGTAGTAAAATCAGATACATCCTTTTCAGCATCTGGTGGAGTTTCCACACCTTCAACTTCTGCTGCATGCATAGCAGGTTCTTCTGCATCAACAGATTCGGATATCTCCACTGTTTTGACACCCTTCAGAACTGATGCATCGGCACTAGGTTCTTATACACCACCTGTGGCTGCTGGGAGTGGCAAGAGAAGATTCTCTGAAATGCCAGCTTCTGCTCATAAAGAACCTCATACTGGATACAGGGATCGTGCGGCTGAAAGGAGGAGCTTGTATGGCTCGTCATCTTCTTTTGGAGATGATTTGCCTGAACATGGTTTTGGGGAGTCAAATCGAGACTCGGCATTGAGGAAGGGTTCTTTTGATTCAATGCCTTTCCCCCCTGGTGTTGGTGGAGGACGTGGGACTGGAGATGCAACCATTGACAGTTATGAGGTTATTACAGCCAACAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAGCATGGGCTGGCACGAAGGCTTGGGTTTAGGAAGAGATGGGAGTGGAATGGTGGAACCAGTGCAGGCTCAGAGTGTGGAAAGGAGAGCCGGACTTGGGAGTCAGCAGAAGAAGTTAGATCCGGCTCTTGAGGCTCAGGCTGGAGATAGTTATAAAACTCTCATTCACAAGAAGGCACTGGCTAGGTTCCGGGAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

995

Amino Acids

110.27

Weight (kDa)

7.67

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	292 - 362	1.5e-11	RNA recognition motif
RRM_1	PF00076	453 - 518	2.5e-17	RNA recognition motif
OCRE	PF17780	600 - 625	1.3e-08	OCRE domain
G-patch_2	PF12656	917 - 965	9.5e-07	G-patch domain
G-patch	PF01585	920 - 961	3.4e-14	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2937
AarI	CACCTGC	2 cut(s)	1115, 2107
AasI	GACNNNNNNGTC	2 cut(s)	948, 2883
Acc36I	ACCTGC	3 cut(s)	1115, 2107, 2360
AccB1I	GGYRCC	1 cut(s)	1702
AccB7I	CCANNNNNTGG	2 cut(s)	1504, 1802
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	3 cut(s)	1287, 1761, 2546
AcoI	YGGCCR	4 cut(s)	227, 757, 1162, 2033
AcsI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
AcuI	CTGAAG	2 cut(s)	8, 2404
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1903, 2160, 2221
AfeI	AGCGCT	1 cut(s)	49
AgsI	TTSAA	8 cut(s)	237, 432, 1529, 1553, 1881, 1899, 2349, 2661
AhdI	GACNNNNNGTC	1 cut(s)	484
AjiI	CACGTC	2 cut(s)	446, 2693
AjnI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 1965, 2674
AjuI	GAANNNNNNNTTGG	2 cut(s)	2595, 2627
Alw21I	GWGCWC	1 cut(s)	2098
Alw26I	GTCTC	5 cut(s)	280, 702, 813, 1446, 2622
Alw44I	GTGCAC	1 cut(s)	2094
AlwNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2327, 2507
Ama87I	CYCGRG	1 cut(s)	1052
Aor13HI	TCCGGA	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	5 cut(s)	227, 757, 858, 1162, 2033
ApaLI	GTGCAC	1 cut(s)	2094
ApoI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
ArsI	GACNNNNNNTTYG	2 cut(s)	2129, 2161
Asp700I	GAANNNNTTC	1 cut(s)	261
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	50, 1404
AspS9I	GGNCC	6 cut(s)	278, 486, 859, 941, 1343, 1601
AsuC2I	CCSGG	2 cut(s)	1852, 2975
AsuHPI	GGTGA	1 cut(s)	729
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	5 cut(s)	278, 486, 941, 1343, 1601
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	1705, 2098
BalI	TGGCCA	3 cut(s)	229, 1164, 2035
BamHI	GGATCC	2 cut(s)	409, 1622
BanI	GGYRCC	1 cut(s)	1702
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	2 cut(s)	14, 905
Bbv12I	GWGCWC	1 cut(s)	2098
BbvCI	CCTCAGC	1 cut(s)	1939
BciT130I	CCWGG	6 cut(s)	414, 508, 1605, 1643, 1967, 2676
BciVI	GTATCC	1 cut(s)	2525
BclI	TGATCA	3 cut(s)	337, 718, 963
BcnI	CCSGG	2 cut(s)	1852, 2975
BcoDI	GTCTC	5 cut(s)	280, 702, 813, 1446, 2622
BfaI	CTAG	7 cut(s)	282, 687, 741, 2075, 2186, 2441, 2967
BfmI	CTRYAG	4 cut(s)	481, 1992, 2215, 2295
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	3 cut(s)	1115, 2107, 2360
BfuI	GTATCC	1 cut(s)	2525
BglII	AGATCT	2 cut(s)	689, 913
BlnI	CCTAGG	1 cut(s)	281
BmcAI	AGTACT	2 cut(s)	1150, 2221
Bme1390I	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 1967, 2676, 2975
Bme18I	GGWCC	5 cut(s)	278, 486, 941, 1343, 1601
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	1052
BmgBI	CACGTC	2 cut(s)	446, 2693
BmgT120I	GGNCC	6 cut(s)	278, 486, 859, 941, 1343, 1601
BmiI	GGNNCC	9 cut(s)	279, 411, 861, 942, 1624, 1704, 1794, 2841, 2972
BmrFI	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 1967, 2676, 2975
BmrI	ACTGGG	2 cut(s)	1125, 1161
BmuI	ACTGGG	2 cut(s)	1125, 1161
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	14, 905
BpmI	CTGGAG	2 cut(s)	2721, 2946
Bpu10I	CCTNAGC	3 cut(s)	1939, 2190, 2919
BpuEI	CTTGAG	2 cut(s)	121, 2933
BpuMI	CCSGG	2 cut(s)	1852, 2975
BsaBI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BsaHI	GRCGYC	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	8 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2674
BsaWI	WCCGGW	4 cut(s)	8, 52, 488, 1826
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bse1I	ACTGG	9 cut(s)	1120, 1156, 1377, 1807, 2118, 2533, 2704, 2843, 2967
Bse3DI	GCAATG	1 cut(s)	2767
Bse8I	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 1967, 2676
BseDI	CCNNGG	8 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2674
BseJI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseMI	GCAATG	1 cut(s)	2767
BseMII	CTCAG	6 cut(s)	897, 1266, 1953, 2204, 2867, 2933
BseNI	ACTGG	9 cut(s)	1120, 1156, 1377, 1807, 2118, 2533, 2704, 2843, 2967
BseRI	GAGGAG	2 cut(s)	2054, 2572
BseSI	GKGCMC	2 cut(s)	1705, 2098
BseYI	CCCAGC	1 cut(s)	2468
BsgI	GTGCAG	4 cut(s)	87, 1143, 1908, 2867
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	5 cut(s)	229, 759, 860, 1164, 2035
BshNI	GGYRCC	1 cut(s)	1702
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	2098
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	8 cut(s)	9, 53, 489, 1827, 1851, 2874, 2906, 2974
BslFI	GGGAC	8 cut(s)	155, 291, 456, 527, 954, 1070, 2273, 2710
BsmAI	GTCTC	5 cut(s)	280, 702, 813, 1446, 2622
BsmFI	GGGAC	8 cut(s)	155, 291, 456, 527, 954, 1070, 2273, 2710
BsmI	GAATGC	1 cut(s)	1593
BsnI	GGCC	5 cut(s)	229, 759, 860, 1164, 2035
Bso31I	GGTCTC	1 cut(s)	702
BsoBI	CYCGRG	1 cut(s)	1052
Bsp1286I	GDGCHC	2 cut(s)	1705, 2098
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	1489
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	3 cut(s)	1287, 1761, 2546
BspANI	GGCC	5 cut(s)	229, 759, 860, 1164, 2035
BspCNI	CTCAG	6 cut(s)	898, 1267, 1952, 2203, 2866, 2932
BspEI	TCCGGA	1 cut(s)	52
BspHI	TCATGA	4 cut(s)	73, 316, 340, 2047
BspLI	GGNNCC	9 cut(s)	279, 411, 861, 942, 1624, 1704, 1794, 2841, 2972
BspMAI	CTGCAG	2 cut(s)	1996, 2219
BspMI	ACCTGC	3 cut(s)	1115, 2107, 2360
BspT107I	GGYRCC	1 cut(s)	1702
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	2767
BsrGI	TGTACA	1 cut(s)	1489
BsrI	ACTGG	9 cut(s)	1120, 1156, 1377, 1807, 2118, 2533, 2704, 2843, 2967
BssECI	CCNNGG	8 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2674
BssNI	GRCGYC	1 cut(s)	601
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	281, 754
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 1967, 2676
Bst6I	CTCTTC	3 cut(s)	811, 951, 2812
BstACI	GRCGYC	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	1652, 1673
BstAUI	TGTACA	1 cut(s)	1489
BstC8I	GCNNGC	4 cut(s)	2362, 2502, 2795, 2850
BstDEI	CTNAG	6 cut(s)	906, 1275, 1939, 2190, 2853, 2919
BstDSI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BstEII	GGTNACC	1 cut(s)	735
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 1404
BstMAI	GTCTC	5 cut(s)	280, 702, 813, 1446, 2622
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 1967, 2676
BstNSI	RCATGY	4 cut(s)	1070, 1424, 1618, 2364
BstPAI	GACNNNNGTC	1 cut(s)	540
BstPI	GGTNACC	1 cut(s)	735
BstSCI	CCNGG	8 cut(s)	412, 506, 1603, 1641, 1850, 1965, 2674, 2973
BstSFI	CTRYAG	4 cut(s)	481, 1992, 2215, 2295
BstSLI	GKGCMC	2 cut(s)	1705, 2098
BstV2I	GAAGAC	2 cut(s)	14, 905
BstX2I	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2282, 2902
BstXI	CCANNNNNNTGG	1 cut(s)	1200
BstYI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2282, 2902
BsuI	GTATCC	1 cut(s)	2525
BsuRI	GGCC	5 cut(s)	229, 759, 860, 1164, 2035
BtgI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BtrI	CACGTC	2 cut(s)	446, 2693
BtsIMutI	CAGTG	8 cut(s)	397, 903, 1185, 1262, 2262, 2403, 2850, 2960
BveI	ACCTGC	3 cut(s)	1115, 2107, 2360
Cac8I	GCNNGC	4 cut(s)	2362, 2502, 2795, 2850
CaiI	CAGNNNCTG	4 cut(s)	1340, 1652, 2327, 2507
CciI	TCATGA	4 cut(s)	73, 316, 340, 2047
CfoI	GCGC	2 cut(s)	50, 1404
Cfr13I	GGNCC	6 cut(s)	278, 486, 859, 941, 1343, 1601
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1902, 2159, 2220
CviQI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1902, 2159, 2220
DdeI	CTNAG	6 cut(s)	906, 1275, 1939, 2190, 2853, 2919
DraI	TTTAAA	1 cut(s)	1770
DrdI	GACNNNNNNGTC	2 cut(s)	948, 2883
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	2 cut(s)	948, 2883
EaeI	YGGCCR	4 cut(s)	227, 757, 1162, 2033
Eam1104I	CTCTTC	3 cut(s)	811, 951, 2812
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	3 cut(s)	811, 951, 2812
Eco130I	CCWWGG	2 cut(s)	281, 754
Eco31I	GGTCTC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	2398
Eco47I	GGWCC	5 cut(s)	278, 486, 941, 1343, 1601
Eco47III	AGCGCT	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	8, 2404
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	1 cut(s)	735
EcoO109I	RGGNCCY	2 cut(s)	278, 941
EcoO65I	GGTNACC	1 cut(s)	735
EcoRII	CCWGG	6 cut(s)	412, 506, 1603, 1641, 1965, 2674
EcoRV	GATATC	1 cut(s)	2398
EcoT14I	CCWWGG	2 cut(s)	281, 754
EcoT22I	ATGCAT	3 cut(s)	466, 2366, 2434
ErhI	CCWWGG	2 cut(s)	281, 754
FaqI	GGGAC	8 cut(s)	155, 291, 456, 527, 954, 1070, 2273, 2710
FauI	CCCGC	2 cut(s)	1294, 1754
FauNDI	CATATG	3 cut(s)	103, 466, 1582
FbaI	TGATCA	3 cut(s)	337, 718, 963
FspBI	CTAG	7 cut(s)	282, 687, 741, 2075, 2186, 2441, 2967
GlaI	GCGC	2 cut(s)	49, 1403
GsaI	CCCAGC	1 cut(s)	2472
GsuI	CTGGAG	2 cut(s)	2721, 2946
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	229, 759, 860, 1164, 2035
HapII	CCGG	8 cut(s)	9, 53, 489, 1827, 1851, 2874, 2906, 2974
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	50, 1404
Hin1I	GRCGYC	1 cut(s)	601
Hin6I	GCGC	2 cut(s)	48, 1402
HinP1I	GCGC	2 cut(s)	48, 1402
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HpaII	CCGG	8 cut(s)	9, 53, 489, 1827, 1851, 2874, 2906, 2974
HphI	GGTGA	1 cut(s)	729
Hpy166II	GTNNAC	4 cut(s)	397, 1370, 1492, 2096
Hpy8I	GTNNAC	4 cut(s)	397, 1370, 1492, 2096
Hpy99I	CGWCG	1 cut(s)	606
HpyCH4IV	ACGT	3 cut(s)	445, 1441, 2692
HpyF3I	CTNAG	6 cut(s)	906, 1275, 1939, 2190, 2853, 2919
HpySE526I	ACGT	3 cut(s)	445, 1441, 2692
Hsp92I	GRCGYC	1 cut(s)	601
HspAI	GCGC	2 cut(s)	48, 1402
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	3 cut(s)	337, 718, 963
LmnI	GCTCC	7 cut(s)	55, 1025, 1288, 1429, 1750, 1798, 2559
MaeI	CTAG	7 cut(s)	282, 687, 741, 2075, 2186, 2441, 2967
MaeII	ACGT	3 cut(s)	445, 1441, 2692
MaeIII	GTNAC	6 cut(s)	248, 614, 626, 735, 1829, 2196
MfeI	CAATTG	3 cut(s)	592, 1656, 2748
MflI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2282, 2902
MhlI	GDGCHC	2 cut(s)	1705, 2098
MlsI	TGGCCA	3 cut(s)	229, 1164, 2035
MluNI	TGGCCA	3 cut(s)	229, 1164, 2035
MlyI	GAGTC	5 cut(s)	670, 2243, 2624, 2627, 2893
MmeI	TCCRAC	1 cut(s)	1675
Mox20I	TGGCCA	3 cut(s)	229, 1164, 2035
Mph1103I	ATGCAT	3 cut(s)	466, 2366, 2434
MroI	TCCGGA	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	3 cut(s)	229, 1164, 2035
MseI	TTAA	4 cut(s)	641, 1227, 1571, 1769
MslI	CAYNNNNRTG	4 cut(s)	552, 711, 957, 1187
Msp20I	TGGCCA	3 cut(s)	229, 1164, 2035
MspA1I	CMGCKG	3 cut(s)	1215, 1649, 1943
MspI	CCGG	8 cut(s)	9, 53, 489, 1827, 1851, 2874, 2906, 2974
MspR9I	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 1967, 2676, 2975
MunI	CAATTG	3 cut(s)	592, 1656, 2748
Mva1269I	GAATGC	1 cut(s)	1593
MvaI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 1967, 2676
NciI	CCSGG	2 cut(s)	1852, 2975
NcoI	CCATGG	1 cut(s)	754
NdeI	CATATG	3 cut(s)	103, 466, 1582
NlaIV	GGNNCC	9 cut(s)	279, 411, 861, 942, 1624, 1704, 1794, 2841, 2972
NmeAIII	GCCGAG	1 cut(s)	2612
NmuCI	GTSAC	3 cut(s)	614, 626, 735
NsiI	ATGCAT	3 cut(s)	466, 2366, 2434
NspI	RCATGY	4 cut(s)	1070, 1424, 1618, 2364
PaeI	GCATGC	1 cut(s)	2364
PagI	TCATGA	4 cut(s)	73, 316, 340, 2047
PaqCI	CACCTGC	2 cut(s)	1115, 2107
PcsI	WCGNNNNNNNCGW	2 cut(s)	610, 955
PctI	GAATGC	1 cut(s)	1593
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	7 cut(s)	5, 308, 557, 608, 2390, 2487, 2657
PflFI	GACNNNGTC	1 cut(s)	2143
PflMI	CCANNNNNTGG	2 cut(s)	1504, 1802
PfoI	TCCNGGA	2 cut(s)	1603, 2973
PleI	GAGTC	5 cut(s)	669, 2242, 2624, 2626, 2892
PpsI	GAGTC	5 cut(s)	669, 2242, 2624, 2626, 2892
PpuMI	RGGWCCY	2 cut(s)	278, 941
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	2937
Psp5II	RGGWCCY	2 cut(s)	278, 941
Psp6I	CCWGG	6 cut(s)	412, 506, 1603, 1641, 1965, 2674
PspEI	GGTNACC	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	2468
PspGI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 1965, 2674
PspN4I	GGNNCC	9 cut(s)	279, 411, 861, 942, 1624, 1704, 1794, 2841, 2972
PspPI	GGNCC	6 cut(s)	278, 486, 859, 941, 1343, 1601
PspPPI	RGGWCCY	2 cut(s)	278, 941
PstI	CTGCAG	2 cut(s)	1996, 2219
PstNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2327, 2507
PsuI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2282, 2902
PsyI	GACNNNGTC	1 cut(s)	2143
PvuII	CAGCTG	3 cut(s)	1215, 1649, 1943
RsaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1903, 2160, 2221
RsaNI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1902, 2159, 2220
RseI	CAYNNNNRTG	4 cut(s)	552, 711, 957, 1187
SaqAI	TTAA	4 cut(s)	641, 1227, 1571, 1769
Sau96I	GGNCC	6 cut(s)	278, 486, 859, 941, 1343, 1601
ScaI	AGTACT	2 cut(s)	1150, 2221
SchI	GAGTC	5 cut(s)	670, 2243, 2624, 2627, 2893
ScrFI	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 1967, 2676, 2975
SduI	GDGCHC	2 cut(s)	1705, 2098
SfcI	CTRYAG	4 cut(s)	481, 1992, 2215, 2295
SinI	GGWCC	5 cut(s)	278, 486, 941, 1343, 1601
SmiMI	CAYNNNNRTG	4 cut(s)	552, 711, 957, 1187
SmlI	CTYRAG	2 cut(s)	136, 2912
SmoI	CTYRAG	2 cut(s)	136, 2912
SphI	GCATGC	1 cut(s)	2364
SsiI	CCGC	3 cut(s)	1287, 1761, 2546
SspMI	CTAG	7 cut(s)	282, 687, 741, 2075, 2186, 2441, 2967
StyD4I	CCNGG	8 cut(s)	412, 506, 1603, 1641, 1850, 1965, 2674, 2973
StyI	CCWWGG	2 cut(s)	281, 754
TaiI	ACGT	3 cut(s)	448, 1444, 2695
TaqI	TCGA	4 cut(s)	700, 748, 769, 2626
TaqII	GACCGA	1 cut(s)	684
TatI	WGTACW	6 cut(s)	300, 1098, 1148, 1489, 1901, 2219
TauI	GCSGC	1 cut(s)	2549
TfiI	GAWTC	7 cut(s)	5, 308, 557, 608, 2390, 2487, 2657
Tru1I	TTAA	4 cut(s)	641, 1227, 1571, 1769
Tru9I	TTAA	4 cut(s)	641, 1227, 1571, 1769
TscAI	CASTG	8 cut(s)	397, 910, 1192, 1262, 2269, 2410, 2850, 2967
TseFI	GTSAC	3 cut(s)	614, 626, 735
Tsp45I	GTSAC	3 cut(s)	614, 626, 735
TspDTI	ATGAA	7 cut(s)	62, 90, 300, 1293, 1392, 1422, 2064
TspGWI	ACGGA	3 cut(s)	947, 1009, 2054
TspRI	CASTG	8 cut(s)	397, 910, 1192, 1262, 2269, 2410, 2850, 2967
Tth111I	GACNNNGTC	1 cut(s)	2143
Van91I	CCANNNNNTGG	2 cut(s)	1504, 1802
VneI	GTGCAC	1 cut(s)	2094
VpaK11BI	GGWCC	5 cut(s)	278, 486, 941, 1343, 1601
XapI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
XbaI	TCTAGA	2 cut(s)	686, 2074
XceI	RCATGY	4 cut(s)	1070, 1424, 1618, 2364
XmaJI	CCTAGG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	7 cut(s)	282, 687, 741, 2075, 2186, 2441, 2967
ZrmI	AGTACT	2 cut(s)	1150, 2221
Zsp2I	ATGCAT	3 cut(s)	466, 2366, 2434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.