AT3G54620
BZIP Family

Basic leucine zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009887
Physical Location & Seq
Reverse (-)
20217854 .. 20220497
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54620.2

Sequence Viewer

Length: 1212 bp
ATGCACATCGTCTTCTCTGTCGATGATTTGACCGAATCCTTCTGGCCTGTTCCCGCTCCGGCGCCGTCGCCGGGATCGTCATCGACTCCGTCACCGACGCAGAACGTGGCGGATGGGATGACTCGAAGTCAATCGGAGTGGGCGTTCCACAGGCTTATCAATGAGTTGTCTGGTTCCGATTCGAGCCCTACGACTAACACAATCGAGAGATCACCTCCACCGGTTCAGTCTCTTTCGAGATTAGAAGAAACCGTTGACGAAACCGAAGATGTTGTTGAGATTCAGAAACCGCAGAATCATCGACGGCTCCCTGTTGATGATCAAGGGAAGAATCGGAATCGTGCTCCGTCGTCTGATCCGGTTGATTCTTCAGCTCCTGTTGTTGTTGATCCTAATCAGTATCATGCGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAGGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACGCAAAAGAAACCTGATGTTCCAGCCAGACAAACTAGTATTTCATCACGAGATGATTCTGATGACGATGATCTTGATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAACAAATGAATGAATTTGATACACAGGTAGGCCAATTAAGAGCCGAGCATTCAACTTTAATTAATCGTCTTAGTGACATGAATCATAAGTATGATGCAGCTGCTGTTGACAACAGAATTCTAAGAGCTGATATCGAAACTTTGAGAACAAAGGTTAAGATGGCAGAGGAAACTGTGAAAAGAGTGACAGGAGTGAACCCTTTGCATTGGTCAAGACCAAACATGGGCATACCATTCAGCAACACACCGAGTGCTTCCTCTAGTATTCCGCCAAACTCTAACCACATTTTGAAACCAGCAAATTCAAGTACCAACACCAGTGCTGGTTTAGCACAAAATCAGAGAGTGGAGACGGCAAATTTCTTGCCGGAACAGGTGAACCGTGAAGGCATGCAGAATCCATTTGCTCCTGATTCTAATCTGTATGAAACCCTACCCCATTGGAATCACAAGCATTAA

Protein Analysis

403

Amino Acids

44.33

Weight (kDa)

6.15

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 230 - 263 5.1e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 5 cut(s) 54, 110, 290, 726, 1022
AclWI GGATC 4 cut(s) 82, 350, 383, 671
AcsI RAATTY 4 cut(s) 767, 870, 1054, 1111
AcuI CTGAAG 2 cut(s) 354, 474
AcyI GRCGYC 1 cut(s) 62
AdeI CACNNNGTG 2 cut(s) 545, 1004
AfaI GTAC 1 cut(s) 1063
AfiI CCNNNNNNNGG 2 cut(s) 71, 977
AflII CTTAAG 1 cut(s) 413
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 807, 1045, 1059
AhdI GACNNNNNGTC 1 cut(s) 126
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 541
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 7 cut(s) 374, 424, 430, 494, 512, 854, 881
AluI AGCT 7 cut(s) 374, 424, 430, 494, 512, 854, 881
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 234, 654, 1097
AlwI GGATC 4 cut(s) 82, 350, 383, 671
AlwNI CAGNNNCTG 2 cut(s) 377, 857
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 2 cut(s) 44, 784
ApeKI GCWGC 3 cut(s) 440, 851, 854
ApoI RAATTY 4 cut(s) 767, 870, 1054, 1111
AseI ATTAAT 1 cut(s) 816
AsiGI ACCGGT 1 cut(s) 220
AspLEI GCGC 3 cut(s) 64, 440, 735
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 4 cut(s) 84, 204, 531, 1141
AsuNHI GCTAGC 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 425
BaeI ACNNNNGTAYC 2 cut(s) 765, 798
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 427, 841, 863
BccI CCATC 3 cut(s) 107, 650, 907
BceAI ACGGC 3 cut(s) 49, 320, 1122
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 234, 654, 1097
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 6 cut(s) 495, 615, 699, 729, 738, 1014
BfoI RGCGCY 2 cut(s) 65, 736
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 3 cut(s) 441, 852, 855
BlsI GCNGC 3 cut(s) 442, 853, 856
Bme1390I CCNGG 2 cut(s) 72, 543
BmeRI GACNNNNNGTC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 425
BmiI GGNNCC 4 cut(s) 63, 175, 308, 520
BmrFI CCNGG 2 cut(s) 72, 543
BmsI GCATC 2 cut(s) 696, 838
BmtI GCTAGC 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 4
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuEI CTTGAG 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 3 cut(s) 79, 393, 1170
BsaHI GRCGYC 1 cut(s) 62
BsaWI WCCGGW 3 cut(s) 220, 358, 472
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 977
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 1071
Bse8I GATNNNNATC 3 cut(s) 79, 393, 1170
BseBI CCWGG 1 cut(s) 543
BseGI GGATG 3 cut(s) 118, 123, 711
BseJI GATNNNNATC 3 cut(s) 79, 393, 1170
BseLI CCNNNNNNNGG 2 cut(s) 71, 977
BseNI ACTGG 1 cut(s) 1071
BseXI GCAGC 3 cut(s) 427, 841, 863
BshFI GGCC 2 cut(s) 46, 786
BshNI GGYRCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 6 cut(s) 59, 71, 221, 359, 473, 1121
BslI CCNNNNNNNGG 2 cut(s) 71, 977
BsmAI GTCTC 3 cut(s) 234, 654, 1097
BsmBI CGTCTC 2 cut(s) 654, 1097
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 2 cut(s) 46, 786
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 188, 346
Bsp143I GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
BspACI CCGC 5 cut(s) 54, 110, 290, 726, 1022
BspANI GGCC 2 cut(s) 46, 786
BspLI GGNNCC 4 cut(s) 63, 175, 308, 520
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 4 cut(s) 82, 350, 383, 671
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 4 cut(s) 253, 466, 928, 1136
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 7 cut(s) 422, 432, 436, 496, 581, 696, 1145
BstDEI CTNAG 2 cut(s) 824, 875
BstF5I GGATG 3 cut(s) 118, 123, 711
BstH2I RGCGCY 2 cut(s) 65, 736
BstHHI GCGC 3 cut(s) 64, 440, 735
BstKTI GATC 7 cut(s) 77, 212, 322, 358, 391, 652, 679
BstMAI GTCTC 3 cut(s) 234, 654, 1097
BstMBI GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
BstMWI GCNNNNNNNGC 3 cut(s) 440, 446, 1082
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 2 cut(s) 70, 541
BstV1I GCAGC 3 cut(s) 427, 841, 863
BstV2I GAAGAC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 2 cut(s) 46, 786
BtsCI GGATG 3 cut(s) 118, 123, 711
BtsIMutI CAGTG 1 cut(s) 1078
Cac8I GCNNGC 7 cut(s) 422, 432, 436, 496, 581, 696, 1145
CaiI CAGNNNCTG 2 cut(s) 377, 857
CfoI GCGC 3 cut(s) 64, 440, 735
Cfr10I RCCGGY 1 cut(s) 220
CseI GACGC 2 cut(s) 106, 671
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 1 cut(s) 1062
CspAI ACCGGT 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 4 cut(s) 404, 832, 976, 1144
CviQI GTAC 1 cut(s) 1062
DdeI CTNAG 2 cut(s) 824, 875
DinI GGCGCC 1 cut(s) 63
DpnI GATC 7 cut(s) 76, 211, 321, 357, 390, 651, 678
DpnII GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
DraIII CACNNNGTG 2 cut(s) 545, 1004
DriI GACNNNNNGTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 126
EciI GGCGGA 2 cut(s) 125, 1011
Eco24I GRGCYC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 886
Eco57I CTGAAG 2 cut(s) 354, 474
Eco88I CYCGRG 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 870
EcoRII CCWGG 1 cut(s) 541
EcoRV GATATC 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 654, 1097
FaeI CATG 4 cut(s) 407, 835, 979, 1147
FaiI YATR 8 cut(s) 405, 833, 840, 846, 977, 983, 1145, 1179
FatI CATG 4 cut(s) 403, 831, 975, 1143
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 441, 852, 855
FokI GGATG 3 cut(s) 125, 130, 718
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 441, 852, 855
FspBI CTAG 6 cut(s) 495, 615, 699, 729, 738, 1014
GlaI GCGC 3 cut(s) 63, 439, 734
GluI GCNGC 3 cut(s) 441, 852, 855
HaeII RGCGCY 2 cut(s) 65, 736
HaeIII GGCC 2 cut(s) 46, 786
HapII CCGG 6 cut(s) 59, 71, 221, 359, 473, 1121
HgaI GACGC 2 cut(s) 106, 671
HhaI GCGC 3 cut(s) 64, 440, 735
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 407, 835, 979, 1147
Hin6I GCGC 3 cut(s) 62, 438, 733
HinP1I GCGC 3 cut(s) 62, 438, 733
HincII GTYRAC 2 cut(s) 256, 862
HindII GTYRAC 2 cut(s) 256, 862
HpaII CCGG 6 cut(s) 59, 71, 221, 359, 473, 1121
HphI GGTGA 4 cut(s) 84, 204, 531, 1141
Hpy166II GTNNAC 4 cut(s) 256, 862, 949, 1132
Hpy188I TCNGA 7 cut(s) 136, 178, 285, 336, 355, 640, 1095
Hpy188III TCNNGA 6 cut(s) 205, 237, 627, 653, 966, 1163
Hpy8I GTNNAC 4 cut(s) 256, 862, 949, 1132
Hpy99I CGWCG 5 cut(s) 70, 100, 306, 352, 456
HpyAV CCTTC 2 cut(s) 49, 1133
HpyCH4III ACNGT 4 cut(s) 253, 466, 928, 1136
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 4 cut(s) 4, 851, 958, 1147
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 446, 1082
HpyF3I CTNAG 2 cut(s) 824, 875
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 407, 835, 979, 1147
HspAI GCGC 3 cut(s) 62, 438, 733
KasI GGCGCC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
LmnI GCTCC 6 cut(s) 61, 312, 349, 379, 524, 1165
Lsp1109I GCAGC 3 cut(s) 427, 841, 863
LweI GCATC 2 cut(s) 696, 838
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 6 cut(s) 495, 615, 699, 729, 738, 1014
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 90, 827, 937
MalI GATC 7 cut(s) 76, 211, 321, 357, 390, 651, 678
MbiI CCGCTC 1 cut(s) 56
MboI GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
MboII GAAGA 7 cut(s) 4, 257, 278, 340, 360, 488, 756
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 188, 346
MluCI AATT 6 cut(s) 767, 788, 813, 870, 1054, 1111
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 2 cut(s) 79, 115
MnlI CCTC 5 cut(s) 225, 547, 696, 913, 1021
MseI TTAA 6 cut(s) 414, 791, 812, 816, 909, 1210
MslI CAYNNNNRTG 1 cut(s) 843
MspA1I CMGCKG 1 cut(s) 854
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 6 cut(s) 59, 71, 221, 359, 473, 1121
MspR9I CCNGG 2 cut(s) 72, 543
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 3 cut(s) 440, 446, 1082
NarI GGCGCC 1 cut(s) 62
NciI CCSGG 1 cut(s) 72
NdeII GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 4 cut(s) 407, 835, 979, 1147
NlaIV GGNNCC 4 cut(s) 63, 175, 308, 520
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 3 cut(s) 90, 827, 937
NspI RCATGY 1 cut(s) 1147
PacI TTAATTAA 1 cut(s) 816
PaeI GCATGC 1 cut(s) 1147
PaeR7I CTCGAG 1 cut(s) 425
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 140, 188
PctI GAATGC 1 cut(s) 802
PflFI GACNNNGTC 1 cut(s) 88
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 3 cut(s) 442, 853, 856
PleI GAGTC 2 cut(s) 79, 115
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 2 cut(s) 79, 115
PshBI ATTAAT 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 63, 175, 308, 520
PspXI VCTCGAGB 1 cut(s) 425
PstNI CAGNNNCTG 2 cut(s) 377, 857
PsuI RGATCY 1 cut(s) 676
PsyI GACNNNGTC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 1 cut(s) 1063
RsaNI GTAC 1 cut(s) 1062
RseI CAYNNNNRTG 1 cut(s) 843
SaqAI TTAA 6 cut(s) 414, 791, 812, 816, 909, 1210
SatI GCNGC 3 cut(s) 441, 852, 855
Sau3AI GATC 7 cut(s) 74, 209, 319, 355, 388, 649, 676
SchI GAGTC 2 cut(s) 79, 115
ScrFI CCNGG 2 cut(s) 72, 543
SduI GDGCHC 2 cut(s) 188, 346
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 2 cut(s) 696, 838
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 3 cut(s) 413, 425, 513
SmoI CTYRAG 3 cut(s) 413, 425, 513
SpeI ACTAGT 1 cut(s) 614
SphI GCATGC 1 cut(s) 1147
Sse9I AATT 6 cut(s) 767, 788, 813, 870, 1054, 1111
SsiI CCGC 5 cut(s) 54, 110, 290, 726, 1022
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 6 cut(s) 495, 615, 699, 729, 738, 1014
StyD4I CCNGG 2 cut(s) 70, 541
TaaI ACNGT 4 cut(s) 253, 466, 928, 1136
TaiI ACGT 1 cut(s) 108
TaqII GACCGA 1 cut(s) 47
TasI AATT 6 cut(s) 767, 788, 813, 870, 1054, 1111
Tru1I TTAA 6 cut(s) 414, 791, 812, 816, 909, 1210
Tru9I TTAA 6 cut(s) 414, 791, 812, 816, 909, 1210
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 3 cut(s) 90, 827, 937
TseI GCWGC 3 cut(s) 440, 851, 854
Tsp45I GTSAC 3 cut(s) 90, 827, 937
TspDTI ATGAA 6 cut(s) 540, 612, 776, 780, 848, 1194
TspGWI ACGGA 2 cut(s) 78, 336
TspRI CASTG 1 cut(s) 1078
Tth111I GACNNNGTC 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 413
VspI ATTAAT 1 cut(s) 816
XapI RAATTY 4 cut(s) 767, 870, 1054, 1111
XceI RCATGY 1 cut(s) 1147
XhoI CTCGAG 1 cut(s) 425
XspI CTAG 6 cut(s) 495, 615, 699, 729, 738, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.