Rw6G027330
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009887
Physical Location & Seq
Forward (+)
51044294 .. 51046538
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027330.1

Sequence Viewer

Length: 1347 bp
ATGCATTCGGCGTTTCAGGCCGACGAAATCTCCGACATCACCGACACCTTCTGGGCCTCCTCCACGTCTCTCCCGATGAATCGCAGCGATTCCGAGTGGGCCTTCGAGCAGTTTCTAGAGGAAGTCGTCTCGGCCCCACCACCACCACCCCCCGCCGCCGATCAATTGACCGTCTCCTCCGTCGCCTCCGCTCACTCCTCGACGTCGAAGCGCGAGGACGTCGATGAGGAGGTGGTCGAGATCAAGAAGCCCGATCGTCATCTCAATTGTCCGCCGCCTCCTCCGCCGTCCACGGCGCCGATTAATTCGGATCAGTACCAACGCGAGCTGCTCAAGAGCAAGCTCGATCTCGCGTGTGCTGCAGTCGCTCTCACTCGGGCTTCGTCTTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGGTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCGAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGATAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCTAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCGATGCAACCAACCTCCAATCATCTCTTTCATCCGGTGGCTCCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTCCTCTAGTTGGAAACCAACAGAGTACTGTTGGGCAACCAATTGTGAGGGGAAGCAACACGACTGAAGTGCCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAACAGCAGCAACAGCACCAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCGTGTGAAGCATTGCCAGTTTGGAACCCTCAGATTCCCCCTGCGGTACCCAAGAATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

448

Amino Acids

48.79

Weight (kDa)

6.17

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 217 - 270 3.7e-14 bZIP transcription factor
bZIP_2 PF07716 218 - 262 9.2e-08 Basic region leucine zipper
bZIP_C PF12498 285 - 410 1e-20 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 206, 222
Acc36I ACCTGC 1 cut(s) 547
Acc65I GGTACC 1 cut(s) 1327
AccB1I GGYRCC 2 cut(s) 295, 1327
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 5 cut(s) 213, 324, 353, 657, 659
AclWI GGATC 5 cut(s) 318, 580, 632, 645, 914
AcoI YGGCCR 2 cut(s) 745, 1268
AcuI CTGAAG 2 cut(s) 1173, 1200
AcyI GRCGYC 3 cut(s) 203, 219, 296
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 5 cut(s) 317, 939, 948, 1141, 1329
AfiI CCNNNNNNNGG 1 cut(s) 1124
AgsI TTSAA 2 cut(s) 391, 620
AjiI CACGTC 2 cut(s) 66, 793
AjnI CCWGG 4 cut(s) 603, 738, 1099, 1270
AleI CACNNNNGTG 1 cut(s) 791
AluBI AGCT 7 cut(s) 328, 343, 476, 557, 689, 1095, 1205
AluI AGCT 7 cut(s) 328, 343, 476, 557, 689, 1095, 1205
Alw26I GTCTC 5 cut(s) 72, 133, 178, 728, 845
AlwI GGATC 5 cut(s) 318, 580, 632, 645, 914
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 6 cut(s) 18, 54, 99, 132, 745, 1268
ApeKI GCWGC 7 cut(s) 84, 328, 359, 476, 1228, 1237, 1258
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AseI ATTAAT 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 1327
AspLEI GCGC 5 cut(s) 213, 298, 418, 657, 659
AspS9I GGNCC 3 cut(s) 54, 99, 133
AsuHPI GGTGA 3 cut(s) 31, 880, 1067
AsuNHI GCTAGC 1 cut(s) 1205
AvaI CYCGRG 1 cut(s) 375
BalI TGGCCA 1 cut(s) 747
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 2 cut(s) 295, 1327
BbsI GAAGAC 1 cut(s) 905
BbvI GCAGC 7 cut(s) 96, 315, 346, 463, 1240, 1249, 1270
BceAI ACGGC 2 cut(s) 271, 309
BcgI CGANNNNNNTGC 8 cut(s) 649, 683, 749, 783, 1165, 1199, 1247, 1281
BciT130I CCWGG 4 cut(s) 605, 740, 1101, 1272
BciVI GTATCC 1 cut(s) 979
BcoDI GTCTC 5 cut(s) 72, 133, 178, 728, 845
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 979
BglI GCCNNNNNGGC 1 cut(s) 522
BisI GCNGC 9 cut(s) 85, 156, 275, 329, 360, 477, 1229, 1238, 1259
BlsI GCNGC 9 cut(s) 86, 157, 276, 330, 361, 478, 1230, 1239, 1260
BmcAI AGTACT 1 cut(s) 1141
Bme1390I CCNGG 4 cut(s) 605, 740, 1101, 1272
BmeT110I CYCGRG 1 cut(s) 375
BmgBI CACGTC 2 cut(s) 66, 793
BmgT120I GGNCC 3 cut(s) 54, 99, 133
BmiI GGNNCC 6 cut(s) 135, 297, 639, 1050, 1307, 1329
BmrFI CCNGG 4 cut(s) 605, 740, 1101, 1272
BmsI GCATC 3 cut(s) 657, 974, 1002
BmtI GCTAGC 1 cut(s) 1209
BpiI GAAGAC 1 cut(s) 905
BpuEI CTTGAG 2 cut(s) 317, 752
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 3 cut(s) 203, 219, 296
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 291, 738, 1099
BsaWI WCCGGW 1 cut(s) 1042
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 1124
Bse1I ACTGG 2 cut(s) 567, 1298
Bse3DI GCAATG 1 cut(s) 1292
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 4 cut(s) 605, 740, 1101, 1272
BseDI CCNNGG 3 cut(s) 291, 738, 1099
BseGI GGATG 3 cut(s) 598, 672, 1039
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 1124
BseMI GCAATG 1 cut(s) 1292
BseMII CTCAG 2 cut(s) 572, 1325
BseNI ACTGG 2 cut(s) 567, 1298
BsePI GCGCGC 1 cut(s) 655
BseRI GAGGAG 6 cut(s) 49, 166, 187, 242, 270, 676
BseXI GCAGC 7 cut(s) 96, 315, 346, 463, 1240, 1249, 1270
BsgI GTGCAG 2 cut(s) 444, 753
Bsh1236I CGCG 5 cut(s) 213, 324, 353, 657, 659
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 6 cut(s) 20, 56, 101, 134, 747, 1270
BshNI GGYRCC 2 cut(s) 295, 1327
BsiEI CGRYCG 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 2 cut(s) 530, 1043
BslI CCNNNNNNNGG 1 cut(s) 1124
BsmAI GTCTC 5 cut(s) 72, 133, 178, 728, 845
BsmBI CGTCTC 3 cut(s) 72, 133, 178
BsmI GAATGC 2 cut(s) 4, 525
BsnI GGCC 6 cut(s) 20, 56, 101, 134, 747, 1270
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 375
BspANI GGCC 6 cut(s) 20, 56, 101, 134, 747, 1270
BspCNI CTCAG 2 cut(s) 571, 1324
BspFNI CGCG 5 cut(s) 213, 324, 353, 657, 659
BspLI GGNNCC 6 cut(s) 135, 297, 639, 1050, 1307, 1329
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 547
BspOI GCTAGC 1 cut(s) 1209
BspPI GGATC 5 cut(s) 318, 580, 632, 645, 914
BspT107I GGYRCC 2 cut(s) 295, 1327
BspTNI GGTCTC 1 cut(s) 728
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 1292
BsrI ACTGG 2 cut(s) 567, 1298
BssECI CCNNGG 3 cut(s) 291, 738, 1099
BssHII GCGCGC 1 cut(s) 655
BssNI GRCGYC 3 cut(s) 203, 219, 296
Bst2UI CCWGG 4 cut(s) 605, 740, 1101, 1272
Bst4CI ACNGT 2 cut(s) 172, 1144
BstACI GRCGYC 3 cut(s) 203, 219, 296
BstC8I GCNNGC 7 cut(s) 326, 341, 518, 657, 745, 958, 1207
BstDEI CTNAG 3 cut(s) 558, 752, 1311
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 598, 672, 1039
BstFNI CGCG 5 cut(s) 213, 324, 353, 657, 659
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 5 cut(s) 213, 298, 418, 657, 659
BstMAI GTCTC 5 cut(s) 72, 133, 178, 728, 845
BstMCI CGRYCG 1 cut(s) 256
BstNI CCWGG 4 cut(s) 605, 740, 1101, 1272
BstNSI RCATGY 1 cut(s) 1222
BstSCI CCNGG 4 cut(s) 603, 738, 1099, 1270
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 5 cut(s) 213, 324, 353, 657, 659
BstV1I GCAGC 7 cut(s) 96, 315, 346, 463, 1240, 1249, 1270
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 6 cut(s) 20, 56, 101, 134, 747, 1270
BtgI CCRYGG 1 cut(s) 291
BtrI CACGTC 2 cut(s) 66, 793
BtsCI GGATG 3 cut(s) 598, 672, 1039
BtsIMutI CAGTG 3 cut(s) 574, 770, 786
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 7 cut(s) 326, 341, 518, 657, 745, 958, 1207
CfoI GCGC 5 cut(s) 213, 298, 418, 657, 659
Cfr13I GGNCC 3 cut(s) 54, 99, 133
CseI GACGC 1 cut(s) 702
Csp6I GTAC 5 cut(s) 316, 938, 947, 1140, 1328
CviAII CATG 3 cut(s) 928, 961, 1219
CviQI GTAC 5 cut(s) 316, 938, 947, 1140, 1328
DdeI CTNAG 3 cut(s) 558, 752, 1311
DinI GGCGCC 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 500
EaeI YGGCCR 2 cut(s) 745, 1268
EciI GGCGGA 2 cut(s) 261, 273
Eco31I GGTCTC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 1173, 1200
Eco88I CYCGRG 1 cut(s) 375
EcoRII CCWGG 4 cut(s) 603, 738, 1099, 1270
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
Esp3I CGTCTC 3 cut(s) 72, 133, 178
FaeI CATG 3 cut(s) 931, 964, 1222
FaiI YATR 9 cut(s) 431, 468, 486, 635, 807, 929, 962, 1211, 1220
FatI CATG 3 cut(s) 927, 960, 1218
FauI CCCGC 4 cut(s) 160, 472, 525, 921
Fnu4HI GCNGC 9 cut(s) 85, 156, 275, 329, 360, 477, 1229, 1238, 1259
FokI GGATG 3 cut(s) 605, 679, 1026
Fsp4HI GCNGC 9 cut(s) 85, 156, 275, 329, 360, 477, 1229, 1238, 1259
GlaI GCGC 5 cut(s) 212, 297, 417, 656, 658
GluI GCNGC 9 cut(s) 85, 156, 275, 329, 360, 477, 1229, 1238, 1259
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 6 cut(s) 20, 56, 101, 134, 747, 1270
HapII CCGG 2 cut(s) 530, 1043
HgaI GACGC 1 cut(s) 702
HhaI GCGC 5 cut(s) 213, 298, 418, 657, 659
Hin1I GRCGYC 3 cut(s) 203, 219, 296
Hin1II CATG 3 cut(s) 931, 964, 1222
Hin6I GCGC 5 cut(s) 211, 296, 416, 655, 657
HinP1I GCGC 5 cut(s) 211, 296, 416, 655, 657
HpaII CCGG 2 cut(s) 530, 1043
HphI GGTGA 3 cut(s) 31, 880, 1067
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 7 cut(s) 34, 94, 310, 549, 561, 592, 1314
Hpy188III TCNNGA 9 cut(s) 73, 116, 238, 244, 334, 680, 699, 731, 892
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 6 cut(s) 26, 185, 205, 208, 224, 580
HpyAV CCTTC 5 cut(s) 58, 112, 453, 602, 1197
HpyCH4III ACNGT 2 cut(s) 172, 1144
HpyCH4IV ACGT 4 cut(s) 65, 203, 219, 792
HpyCH4V TGCA 6 cut(s) 4, 362, 461, 770, 1015, 1222
HpyF3I CTNAG 3 cut(s) 558, 752, 1311
HpySE526I ACGT 4 cut(s) 65, 203, 219, 792
Hsp92I GRCGYC 3 cut(s) 203, 219, 296
Hsp92II CATG 3 cut(s) 931, 964, 1222
HspAI GCGC 5 cut(s) 211, 296, 416, 655, 657
KasI GGCGCC 1 cut(s) 295
KpnI GGTACC 1 cut(s) 1331
LmnI GCTCC 1 cut(s) 1054
Lsp1109I GCAGC 7 cut(s) 96, 315, 346, 463, 1240, 1249, 1270
LweI GCATC 3 cut(s) 657, 974, 1002
MaeII ACGT 4 cut(s) 65, 203, 219, 792
MaeIII GTNAC 1 cut(s) 451
MbiI CCGCTC 1 cut(s) 191
MboII GAAGA 5 cut(s) 714, 717, 840, 893, 910
MfeI CAATTG 3 cut(s) 164, 265, 1155
MflI RGATCY 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 6 cut(s) 164, 265, 304, 621, 811, 1155
MluNI TGGCCA 1 cut(s) 747
Mly113I GGCGCC 1 cut(s) 296
MlyI GAGTC 4 cut(s) 415, 581, 692, 765
MmeI TCCRAC 2 cut(s) 57, 1105
Mox20I TGGCCA 1 cut(s) 747
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 747
MseI TTAA 2 cut(s) 303, 857
MslI CAYNNNNRTG 2 cut(s) 791, 804
Msp20I TGGCCA 1 cut(s) 747
MspI CCGG 2 cut(s) 530, 1043
MspR9I CCNGG 4 cut(s) 605, 740, 1101, 1272
MunI CAATTG 3 cut(s) 164, 265, 1155
Mva1269I GAATGC 2 cut(s) 4, 525
MvaI CCWGG 4 cut(s) 605, 740, 1101, 1272
MvnI CGCG 5 cut(s) 213, 324, 353, 657, 659
NarI GGCGCC 1 cut(s) 296
NheI GCTAGC 1 cut(s) 1205
NlaIII CATG 3 cut(s) 931, 964, 1222
NlaIV GGNNCC 6 cut(s) 135, 297, 639, 1050, 1307, 1329
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1222
OliI CACNNNNGTG 1 cut(s) 791
PauI GCGCGC 1 cut(s) 655
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 71
PctI GAATGC 2 cut(s) 4, 525
PfeI GAWTC 7 cut(s) 79, 89, 796, 884, 1114, 1279, 1315
PkrI GCNGC 9 cut(s) 86, 157, 276, 330, 361, 478, 1230, 1239, 1260
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 4 cut(s) 415, 581, 691, 764
PluTI GGCGCC 1 cut(s) 299
PpsI GAGTC 4 cut(s) 415, 581, 691, 764
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 4 cut(s) 603, 738, 1099, 1270
PspGI CCWGG 4 cut(s) 603, 738, 1099, 1270
PspN4I GGNNCC 6 cut(s) 135, 297, 639, 1050, 1307, 1329
PspPI GGNCC 3 cut(s) 54, 99, 133
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 637
PteI GCGCGC 1 cut(s) 655
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 5 cut(s) 317, 939, 948, 1141, 1329
RsaNI GTAC 5 cut(s) 316, 938, 947, 1140, 1328
RseI CAYNNNNRTG 2 cut(s) 791, 804
SaqAI TTAA 2 cut(s) 303, 857
SatI GCNGC 9 cut(s) 85, 156, 275, 329, 360, 477, 1229, 1238, 1259
Sau96I GGNCC 3 cut(s) 54, 99, 133
ScaI AGTACT 1 cut(s) 1141
SchI GAGTC 4 cut(s) 415, 581, 692, 765
ScrFI CCNGG 4 cut(s) 605, 740, 1101, 1272
SfaNI GCATC 3 cut(s) 657, 974, 1002
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 791, 804
SmlI CTYRAG 2 cut(s) 332, 731
SmoI CTYRAG 2 cut(s) 332, 731
Sse9I AATT 6 cut(s) 164, 265, 304, 621, 811, 1155
SspDI GGCGCC 1 cut(s) 295
SspI AATATT 2 cut(s) 834, 847
StyD4I CCNGG 4 cut(s) 603, 738, 1099, 1270
TaaI ACNGT 2 cut(s) 172, 1144
TaiI ACGT 4 cut(s) 68, 206, 222, 795
TaqI TCGA 9 cut(s) 105, 200, 206, 222, 237, 345, 578, 759, 1112
TasI AATT 6 cut(s) 164, 265, 304, 621, 811, 1155
TatI WGTACW 1 cut(s) 1139
TauI GCSGC 2 cut(s) 158, 277
TfiI GAWTC 7 cut(s) 79, 89, 796, 884, 1114, 1279, 1315
Tru1I TTAA 2 cut(s) 303, 857
Tru9I TTAA 2 cut(s) 303, 857
TscAI CASTG 3 cut(s) 574, 777, 793
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 7 cut(s) 84, 328, 359, 476, 1228, 1237, 1258
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 92, 455, 1028
TspGWI ACGGA 2 cut(s) 169, 1272
TspRI CASTG 3 cut(s) 574, 777, 793
VspI ATTAAT 1 cut(s) 303
XbaI TCTAGA 2 cut(s) 115, 698
XceI RCATGY 1 cut(s) 1222
ZraI GACGTC 2 cut(s) 204, 220
ZrmI AGTACT 1 cut(s) 1141
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.