RchiOBHm_Chr6g0289641
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009887
Physical Location & Seq
Forward (+)
52680490 .. 52683247
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25984

Sequence Viewer

Length: 1329 bp
ATGCATTCGGCGTTTCAGGCCGACGAAATCTCCGACATCACCGAAACCTTCTGGGCCTCCTCCACGTCTCTCCAGATGAATCGCAGCGACTCCGAGTGGGCCTTCGAGCAGTTTCTAGAGGAAGTCGTCTCCGCCCCACCACCACCACCACCCCGCGCCGCCGATCAATTGACCGTCTCCTCCGTTGCCTCCGCTCACTCCTCGACGTCGAAGCGCGAGGAGGTCGATGAGGAGGTGGTCGAGATCAAGAAGCCCGATCGTCATCTCAATTGTCCGCCGCCTCCTCTGCCGTCCACGGCGCCGATTAATTCGGATCAGTACCAACGCGAGCTGCTCAAGAGCAAGCTCGATCTCGCGTGTGCTGCAGTCGCTCTCACTCGGGCTTCGTCTTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGTTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCGAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGTTAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCAAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCAATGCAACCAACCTCCAATCATCTCTTTCATCCGGTGGCTCCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTCCTCTAGTTGGAAACCAACAGAGTACCGTTGGGCAACCAATTGTGAGGGGAAGCAACACGACTGAAGTACCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCGTGTGAAGCATTGCCAGTTTGGAACCCTCAGATTCCCCATGCAGTCCCCAAGAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

442

Amino Acids

48.19

Weight (kDa)

6.17

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 218 - 271 1e-13 bZIP transcription factor
bZIP_2 PF07716 219 - 264 2e-08 Basic region leucine zipper
bZIP_C PF12498 286 - 412 7.5e-21 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
AciI CCGC 9 cut(s) 132, 154, 159, 192, 275, 278, 482, 521, 917
AclWI GGATC 5 cut(s) 321, 583, 635, 648, 917
AcoI YGGCCR 2 cut(s) 748, 1253
AcuI CTGAAG 2 cut(s) 1176, 1203
AcyI GRCGYC 2 cut(s) 206, 299
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 5 cut(s) 320, 942, 951, 1144, 1188
AfiI CCNNNNNNNGG 1 cut(s) 1127
AgsI TTSAA 2 cut(s) 394, 623
AjiI CACGTC 2 cut(s) 66, 796
AjnI CCWGG 4 cut(s) 606, 741, 1102, 1255
AleI CACNNNNGTG 1 cut(s) 794
AluBI AGCT 7 cut(s) 331, 346, 479, 560, 692, 1098, 1208
AluI AGCT 7 cut(s) 331, 346, 479, 560, 692, 1098, 1208
Alw26I GTCTC 5 cut(s) 72, 133, 181, 731, 848
AlwI GGATC 5 cut(s) 321, 583, 635, 648, 917
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 5 cut(s) 18, 54, 99, 748, 1253
ApeKI GCWGC 7 cut(s) 84, 331, 362, 479, 1231, 1234, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 6 cut(s) 158, 216, 301, 421, 660, 662
AspS9I GGNCC 2 cut(s) 54, 99
AsuHPI GGTGA 3 cut(s) 31, 883, 1070
AsuNHI GCTAGC 1 cut(s) 1208
AvaI CYCGRG 1 cut(s) 378
BaeI ACNNNNGTAYC 2 cut(s) 1170, 1203
BalI TGGCCA 1 cut(s) 750
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 908
BbvI GCAGC 7 cut(s) 96, 318, 349, 466, 1243, 1246, 1255
BceAI ACGGC 2 cut(s) 274, 312
BcgI CGANNNNNNTGC 6 cut(s) 652, 686, 752, 786, 1232, 1266
BciT130I CCWGG 4 cut(s) 608, 743, 1104, 1257
BciVI GTATCC 1 cut(s) 982
BcoDI GTCTC 5 cut(s) 72, 133, 181, 731, 848
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 550
BfuI GTATCC 1 cut(s) 982
BglI GCCNNNNNGGC 1 cut(s) 525
BisI GCNGC 9 cut(s) 85, 159, 278, 332, 363, 480, 1232, 1235, 1244
BlsI GCNGC 9 cut(s) 86, 160, 279, 333, 364, 481, 1233, 1236, 1245
Bme1390I CCNGG 4 cut(s) 608, 743, 1104, 1257
BmeT110I CYCGRG 1 cut(s) 378
BmgBI CACGTC 2 cut(s) 66, 796
BmgT120I GGNCC 2 cut(s) 54, 99
BmiI GGNNCC 4 cut(s) 300, 642, 1053, 1292
BmrFI CCNGG 4 cut(s) 608, 743, 1104, 1257
BmsI GCATC 2 cut(s) 660, 977
BmtI GCTAGC 1 cut(s) 1212
BpiI GAAGAC 1 cut(s) 908
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 320, 755
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 2 cut(s) 206, 299
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 3 cut(s) 294, 741, 1102
BsaWI WCCGGW 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse1I ACTGG 2 cut(s) 570, 1283
Bse3DI GCAATG 1 cut(s) 1277
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 4 cut(s) 608, 743, 1104, 1257
BseDI CCNNGG 3 cut(s) 294, 741, 1102
BseGI GGATG 3 cut(s) 601, 675, 1042
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMI GCAATG 1 cut(s) 1277
BseMII CTCAG 2 cut(s) 575, 1310
BseNI ACTGG 2 cut(s) 570, 1283
BsePI GCGCGC 1 cut(s) 658
BseRI GAGGAG 7 cut(s) 49, 169, 190, 233, 245, 273, 679
BseXI GCAGC 7 cut(s) 96, 318, 349, 466, 1243, 1246, 1255
BsgI GTGCAG 2 cut(s) 447, 756
Bsh1236I CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 5 cut(s) 20, 56, 101, 750, 1255
BshNI GGYRCC 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 533, 1046
BslFI GGGAC 1 cut(s) 1298
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmAI GTCTC 5 cut(s) 72, 133, 181, 731, 848
BsmBI CGTCTC 3 cut(s) 72, 133, 181
BsmFI GGGAC 1 cut(s) 1298
BsmI GAATGC 2 cut(s) 4, 528
BsnI GGCC 5 cut(s) 20, 56, 101, 750, 1255
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 378
BspACI CCGC 9 cut(s) 132, 154, 159, 192, 275, 278, 482, 521, 917
BspANI GGCC 5 cut(s) 20, 56, 101, 750, 1255
BspCNI CTCAG 2 cut(s) 574, 1309
BspFNI CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
BspLI GGNNCC 4 cut(s) 300, 642, 1053, 1292
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 1212
BspPI GGATC 5 cut(s) 321, 583, 635, 648, 917
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 1277
BsrI ACTGG 2 cut(s) 570, 1283
BssECI CCNNGG 3 cut(s) 294, 741, 1102
BssHII GCGCGC 1 cut(s) 658
BssNI GRCGYC 2 cut(s) 206, 299
Bst2UI CCWGG 4 cut(s) 608, 743, 1104, 1257
Bst4CI ACNGT 3 cut(s) 175, 777, 1147
BstACI GRCGYC 2 cut(s) 206, 299
BstC8I GCNNGC 7 cut(s) 329, 344, 521, 660, 748, 961, 1210
BstDEI CTNAG 3 cut(s) 561, 755, 1296
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 601, 675, 1042
BstFNI CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 6 cut(s) 158, 216, 301, 421, 660, 662
BstMAI GTCTC 5 cut(s) 72, 133, 181, 731, 848
BstMCI CGRYCG 1 cut(s) 259
BstNI CCWGG 4 cut(s) 608, 743, 1104, 1257
BstNSI RCATGY 1 cut(s) 1225
BstSCI CCNGG 4 cut(s) 606, 741, 1102, 1255
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
BstV1I GCAGC 7 cut(s) 96, 318, 349, 466, 1243, 1246, 1255
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 5 cut(s) 20, 56, 101, 750, 1255
BtgI CCRYGG 1 cut(s) 294
BtrI CACGTC 2 cut(s) 66, 796
BtsCI GGATG 3 cut(s) 601, 675, 1042
BtsIMutI CAGTG 3 cut(s) 577, 773, 789
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 7 cut(s) 329, 344, 521, 660, 748, 961, 1210
CfoI GCGC 6 cut(s) 158, 216, 301, 421, 660, 662
Cfr13I GGNCC 2 cut(s) 54, 99
CseI GACGC 1 cut(s) 705
Csp6I GTAC 5 cut(s) 319, 941, 950, 1143, 1187
CviAII CATG 4 cut(s) 931, 964, 1222, 1307
CviQI GTAC 5 cut(s) 319, 941, 950, 1143, 1187
DdeI CTNAG 3 cut(s) 561, 755, 1296
DinI GGCGCC 1 cut(s) 300
DraIII CACNNNGTG 1 cut(s) 503
EaeI YGGCCR 2 cut(s) 748, 1253
EciI GGCGGA 2 cut(s) 121, 264
Eco31I GGTCTC 1 cut(s) 731
Eco57I CTGAAG 2 cut(s) 1176, 1203
Eco88I CYCGRG 1 cut(s) 378
EcoRII CCWGG 4 cut(s) 606, 741, 1102, 1255
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
Esp3I CGTCTC 3 cut(s) 72, 133, 181
FaeI CATG 4 cut(s) 934, 967, 1225, 1310
FaqI GGGAC 1 cut(s) 1298
FatI CATG 4 cut(s) 930, 963, 1221, 1306
FauI CCCGC 3 cut(s) 161, 528, 924
Fnu4HI GCNGC 9 cut(s) 85, 159, 278, 332, 363, 480, 1232, 1235, 1244
FokI GGATG 3 cut(s) 608, 682, 1029
Fsp4HI GCNGC 9 cut(s) 85, 159, 278, 332, 363, 480, 1232, 1235, 1244
GlaI GCGC 6 cut(s) 157, 215, 300, 420, 659, 661
GluI GCNGC 9 cut(s) 85, 159, 278, 332, 363, 480, 1232, 1235, 1244
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 20, 56, 101, 750, 1255
HapII CCGG 2 cut(s) 533, 1046
HgaI GACGC 1 cut(s) 705
HhaI GCGC 6 cut(s) 158, 216, 301, 421, 660, 662
Hin1I GRCGYC 2 cut(s) 206, 299
Hin1II CATG 4 cut(s) 934, 967, 1225, 1310
Hin6I GCGC 6 cut(s) 156, 214, 299, 419, 658, 660
HinP1I GCGC 6 cut(s) 156, 214, 299, 419, 658, 660
HpaII CCGG 2 cut(s) 533, 1046
HphI GGTGA 3 cut(s) 31, 883, 1070
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 7 cut(s) 34, 94, 313, 552, 564, 595, 1299
Hpy188III TCNNGA 9 cut(s) 73, 116, 241, 247, 337, 683, 702, 734, 895
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 4 cut(s) 26, 208, 211, 583
HpyAV CCTTC 5 cut(s) 58, 112, 456, 605, 1200
HpyCH4III ACNGT 3 cut(s) 175, 777, 1147
HpyCH4IV ACGT 3 cut(s) 65, 206, 795
HpyCH4V TGCA 7 cut(s) 4, 365, 464, 773, 1018, 1225, 1310
HpyF3I CTNAG 3 cut(s) 561, 755, 1296
HpySE526I ACGT 3 cut(s) 65, 206, 795
Hsp92I GRCGYC 2 cut(s) 206, 299
Hsp92II CATG 4 cut(s) 934, 967, 1225, 1310
HspAI GCGC 6 cut(s) 156, 214, 299, 419, 658, 660
KasI GGCGCC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 1057
Lsp1109I GCAGC 7 cut(s) 96, 318, 349, 466, 1243, 1246, 1255
LweI GCATC 2 cut(s) 660, 977
MaeII ACGT 3 cut(s) 65, 206, 795
MaeIII GTNAC 1 cut(s) 454
MbiI CCGCTC 1 cut(s) 194
MboII GAAGA 5 cut(s) 717, 720, 843, 896, 913
MfeI CAATTG 3 cut(s) 167, 268, 1158
MflI RGATCY 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 6 cut(s) 167, 268, 307, 624, 814, 1158
MluNI TGGCCA 1 cut(s) 750
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 5 cut(s) 83, 418, 584, 695, 768
MmeI TCCRAC 2 cut(s) 57, 1108
Mox20I TGGCCA 1 cut(s) 750
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 750
MseI TTAA 3 cut(s) 306, 779, 860
MslI CAYNNNNRTG 2 cut(s) 794, 807
Msp20I TGGCCA 1 cut(s) 750
MspI CCGG 2 cut(s) 533, 1046
MspR9I CCNGG 4 cut(s) 608, 743, 1104, 1257
MunI CAATTG 3 cut(s) 167, 268, 1158
Mva1269I GAATGC 2 cut(s) 4, 528
MvaI CCWGG 4 cut(s) 608, 743, 1104, 1257
MvnI CGCG 6 cut(s) 156, 216, 327, 356, 660, 662
NarI GGCGCC 1 cut(s) 299
NheI GCTAGC 1 cut(s) 1208
NlaIII CATG 4 cut(s) 934, 967, 1225, 1310
NlaIV GGNNCC 4 cut(s) 300, 642, 1053, 1292
NmuCI GTSAC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1225
OliI CACNNNNGTG 1 cut(s) 794
PauI GCGCGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 2 cut(s) 4, 528
PfeI GAWTC 6 cut(s) 79, 799, 887, 1117, 1264, 1300
PkrI GCNGC 9 cut(s) 86, 160, 279, 333, 364, 481, 1233, 1236, 1245
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 5 cut(s) 83, 418, 584, 694, 767
PluTI GGCGCC 1 cut(s) 302
PpsI GAGTC 5 cut(s) 83, 418, 584, 694, 767
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 4 cut(s) 606, 741, 1102, 1255
PspGI CCWGG 4 cut(s) 606, 741, 1102, 1255
PspN4I GGNNCC 4 cut(s) 300, 642, 1053, 1292
PspPI GGNCC 2 cut(s) 54, 99
PsrI GAACNNNNNNTAC 2 cut(s) 1179, 1211
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 640
PteI GCGCGC 1 cut(s) 658
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 5 cut(s) 320, 942, 951, 1144, 1188
RsaNI GTAC 5 cut(s) 319, 941, 950, 1143, 1187
RseI CAYNNNNRTG 2 cut(s) 794, 807
SaqAI TTAA 3 cut(s) 306, 779, 860
SatI GCNGC 9 cut(s) 85, 159, 278, 332, 363, 480, 1232, 1235, 1244
Sau96I GGNCC 2 cut(s) 54, 99
SchI GAGTC 5 cut(s) 83, 418, 584, 695, 768
ScrFI CCNGG 4 cut(s) 608, 743, 1104, 1257
SfaNI GCATC 2 cut(s) 660, 977
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 794, 807
SmlI CTYRAG 2 cut(s) 335, 734
SmoI CTYRAG 2 cut(s) 335, 734
Sse9I AATT 6 cut(s) 167, 268, 307, 624, 814, 1158
SsiI CCGC 9 cut(s) 132, 154, 159, 192, 275, 278, 482, 521, 917
SspDI GGCGCC 1 cut(s) 298
SspI AATATT 2 cut(s) 837, 850
StyD4I CCNGG 4 cut(s) 606, 741, 1102, 1255
TaaI ACNGT 3 cut(s) 175, 777, 1147
TaiI ACGT 3 cut(s) 68, 209, 798
TaqI TCGA 9 cut(s) 105, 203, 209, 225, 240, 348, 581, 762, 1115
TasI AATT 6 cut(s) 167, 268, 307, 624, 814, 1158
TauI GCSGC 2 cut(s) 161, 280
TfiI GAWTC 6 cut(s) 79, 799, 887, 1117, 1264, 1300
Tru1I TTAA 3 cut(s) 306, 779, 860
Tru9I TTAA 3 cut(s) 306, 779, 860
TscAI CASTG 3 cut(s) 577, 780, 796
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 7 cut(s) 84, 331, 362, 479, 1231, 1234, 1243
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 92, 458, 1031
TspGWI ACGGA 2 cut(s) 172, 1257
TspRI CASTG 3 cut(s) 577, 780, 796
VspI ATTAAT 1 cut(s) 306
XbaI TCTAGA 2 cut(s) 115, 701
XceI RCATGY 1 cut(s) 1225
ZraI GACGTC 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.