Rh6AG316900
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009887
Physical Location & Seq
Forward (+)
51541858 .. 51544422
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG316900.1

Sequence Viewer

Length: 984 bp
ATGTGGTTGCAGGCTTCGTCTTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGGTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCGAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGATAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCTAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCGATGCAACCAACCTCCAATCATCTCTTTCATCCGGTGGCTCCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTTCTCTAGTTGGAAACCAACAGAGTACTGTTGGGCAACCAATTGTGAGGGGAAGCAACACGACTGAAGTGCCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAACAGCAGCAACAGCAGCAACAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCGTGTGAAGCATTGCCAGTTTGGAATCCTCAGATTCCCCCTGCGGTACCCAAGAATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

327

Amino Acids

35.7

Weight (kDa)

9.18

Isoelectric Point (pI)

67.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 95 - 148 2.3e-14 bZIP transcription factor
bZIP_2 PF07716 96 - 140 5.9e-08 Basic region leucine zipper
bZIP_C PF12498 163 - 288 6.5e-21 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
Acc65I GGTACC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 964
AccII CGCG 2 cut(s) 291, 293
AciI CCGC 4 cut(s) 113, 152, 548, 962
AclWI GGATC 4 cut(s) 214, 266, 279, 548
AcoI YGGCCR 2 cut(s) 379, 905
AcuI CTGAAG 2 cut(s) 807, 834
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 4 cut(s) 573, 582, 775, 966
AgsI TTSAA 2 cut(s) 25, 254
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 4 cut(s) 237, 372, 733, 907
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 5 cut(s) 110, 191, 323, 729, 839
AluI AGCT 5 cut(s) 110, 191, 323, 729, 839
Alw26I GTCTC 2 cut(s) 362, 479
AlwI GGATC 4 cut(s) 214, 266, 279, 548
AoxI GGCC 2 cut(s) 379, 905
ApeKI GCWGC 5 cut(s) 110, 862, 871, 880, 895
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
Asp718I GGTACC 1 cut(s) 964
AspLEI GCGC 3 cut(s) 52, 291, 293
AsuHPI GGTGA 2 cut(s) 514, 701
AsuNHI GCTAGC 1 cut(s) 839
BalI TGGCCA 1 cut(s) 381
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 964
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 5 cut(s) 97, 874, 883, 892, 907
BcgI CGANNNNNNTGC 8 cut(s) 283, 317, 383, 417, 799, 833, 884, 918
BciT130I CCWGG 4 cut(s) 239, 374, 735, 909
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 362, 479
BfaI CTAG 9 cut(s) 147, 324, 333, 557, 585, 605, 687, 755, 840
BfuAI ACCTGC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 5 cut(s) 111, 863, 872, 881, 896
BlsI GCNGC 5 cut(s) 112, 864, 873, 882, 897
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 4 cut(s) 239, 374, 735, 909
BmgBI CACGTC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 273, 684, 966
BmrFI CCNGG 4 cut(s) 239, 374, 735, 909
BmsI GCATC 3 cut(s) 291, 608, 636
BmtI GCTAGC 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 372, 733
BsaWI WCCGGW 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 201, 935
Bse3DI GCAATG 1 cut(s) 929
BseBI CCWGG 4 cut(s) 239, 374, 735, 909
BseDI CCNNGG 2 cut(s) 372, 733
BseGI GGATG 3 cut(s) 232, 306, 673
BseMI GCAATG 1 cut(s) 929
BseMII CTCAG 2 cut(s) 206, 962
BseNI ACTGG 2 cut(s) 201, 935
BsePI GCGCGC 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 5 cut(s) 97, 874, 883, 892, 907
BsgI GTGCAG 2 cut(s) 78, 387
Bsh1236I CGCG 2 cut(s) 291, 293
BshFI GGCC 2 cut(s) 381, 907
BshNI GGYRCC 1 cut(s) 964
BsiSI CCGG 2 cut(s) 164, 677
BsmAI GTCTC 2 cut(s) 362, 479
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 2 cut(s) 381, 907
Bso31I GGTCTC 1 cut(s) 362
Bsp143I GATC 5 cut(s) 206, 271, 361, 540, 847
BspACI CCGC 4 cut(s) 113, 152, 548, 962
BspANI GGCC 2 cut(s) 381, 907
BspCNI CTCAG 2 cut(s) 205, 961
BspFNI CGCG 2 cut(s) 291, 293
BspLI GGNNCC 3 cut(s) 273, 684, 966
BspMI ACCTGC 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 843
BspPI GGATC 4 cut(s) 214, 266, 279, 548
BspT107I GGYRCC 1 cut(s) 964
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 929
BsrI ACTGG 2 cut(s) 201, 935
BssECI CCNNGG 2 cut(s) 372, 733
BssHII GCGCGC 1 cut(s) 289
BssMI GATC 5 cut(s) 206, 271, 361, 540, 847
Bst2UI CCWGG 4 cut(s) 239, 374, 735, 909
Bst4CI ACNGT 1 cut(s) 778
BstC8I GCNNGC 6 cut(s) 12, 152, 291, 379, 592, 841
BstDEI CTNAG 3 cut(s) 192, 386, 948
BstF5I GGATG 3 cut(s) 232, 306, 673
BstFNI CGCG 2 cut(s) 291, 293
BstHHI GCGC 3 cut(s) 52, 291, 293
BstKTI GATC 5 cut(s) 209, 274, 364, 543, 850
BstMAI GTCTC 2 cut(s) 362, 479
BstMBI GATC 5 cut(s) 206, 271, 361, 540, 847
BstNI CCWGG 4 cut(s) 239, 374, 735, 909
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 4 cut(s) 237, 372, 733, 907
BstUI CGCG 2 cut(s) 291, 293
BstV1I GCAGC 5 cut(s) 97, 874, 883, 892, 907
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 381, 907
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 232, 306, 673
BtsIMutI CAGTG 3 cut(s) 208, 404, 420
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 6 cut(s) 12, 152, 291, 379, 592, 841
CfoI GCGC 3 cut(s) 52, 291, 293
CseI GACGC 1 cut(s) 336
Csp6I GTAC 4 cut(s) 572, 581, 774, 965
CviAII CATG 3 cut(s) 562, 595, 853
CviQI GTAC 4 cut(s) 572, 581, 774, 965
DdeI CTNAG 3 cut(s) 192, 386, 948
DpnI GATC 5 cut(s) 208, 273, 363, 542, 849
DpnII GATC 5 cut(s) 206, 271, 361, 540, 847
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 379, 905
Eco31I GGTCTC 1 cut(s) 362
Eco57I CTGAAG 2 cut(s) 807, 834
EcoRII CCWGG 4 cut(s) 237, 372, 733, 907
FaeI CATG 3 cut(s) 565, 598, 856
FaiI YATR 9 cut(s) 65, 102, 120, 269, 441, 563, 596, 845, 854
FatI CATG 3 cut(s) 561, 594, 852
FauI CCCGC 3 cut(s) 106, 159, 555
Fnu4HI GCNGC 5 cut(s) 111, 863, 872, 881, 896
FokI GGATG 3 cut(s) 239, 313, 660
Fsp4HI GCNGC 5 cut(s) 111, 863, 872, 881, 896
FspBI CTAG 9 cut(s) 147, 324, 333, 557, 585, 605, 687, 755, 840
GlaI GCGC 3 cut(s) 51, 290, 292
GluI GCNGC 5 cut(s) 111, 863, 872, 881, 896
HaeIII GGCC 2 cut(s) 381, 907
HapII CCGG 2 cut(s) 164, 677
HgaI GACGC 1 cut(s) 336
HhaI GCGC 3 cut(s) 52, 291, 293
Hin1II CATG 3 cut(s) 565, 598, 856
Hin6I GCGC 3 cut(s) 50, 289, 291
HinP1I GCGC 3 cut(s) 50, 289, 291
HinfI GANTC 9 cut(s) 55, 221, 317, 390, 430, 518, 916, 943, 952
HpaII CCGG 2 cut(s) 164, 677
HphI GGTGA 2 cut(s) 514, 701
Hpy188I TCNGA 4 cut(s) 183, 195, 226, 951
Hpy188III TCNNGA 4 cut(s) 314, 333, 365, 526
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 87, 236, 831
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 5 cut(s) 10, 95, 404, 649, 856
HpyF3I CTNAG 3 cut(s) 192, 386, 948
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 565, 598, 856
HspAI GCGC 3 cut(s) 50, 289, 291
KpnI GGTACC 1 cut(s) 968
Kzo9I GATC 5 cut(s) 206, 271, 361, 540, 847
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 5 cut(s) 97, 874, 883, 892, 907
LweI GCATC 3 cut(s) 291, 608, 636
MaeI CTAG 9 cut(s) 147, 324, 333, 557, 585, 605, 687, 755, 840
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 85
MalI GATC 5 cut(s) 208, 273, 363, 542, 849
MboI GATC 5 cut(s) 206, 271, 361, 540, 847
MboII GAAGA 5 cut(s) 348, 351, 474, 527, 544
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 255, 445, 789
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 4 cut(s) 49, 215, 326, 399
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 9 cut(s) 100, 130, 288, 291, 522, 667, 754, 789, 957
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 2 cut(s) 425, 438
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 2 cut(s) 164, 677
MspR9I CCNGG 4 cut(s) 239, 374, 735, 909
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 4 cut(s) 239, 374, 735, 909
MvnI CGCG 2 cut(s) 291, 293
NdeII GATC 5 cut(s) 206, 271, 361, 540, 847
NheI GCTAGC 1 cut(s) 839
NlaIII CATG 3 cut(s) 565, 598, 856
NlaIV GGNNCC 3 cut(s) 273, 684, 966
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 856
OliI CACNNNNGTG 1 cut(s) 425
PauI GCGCGC 1 cut(s) 289
PctI GAATGC 1 cut(s) 159
PfeI GAWTC 5 cut(s) 430, 518, 916, 943, 952
PkrI GCNGC 5 cut(s) 112, 864, 873, 882, 897
PleI GAGTC 4 cut(s) 49, 215, 325, 398
PpsI GAGTC 4 cut(s) 49, 215, 325, 398
Psp6I CCWGG 4 cut(s) 237, 372, 733, 907
PspGI CCWGG 4 cut(s) 237, 372, 733, 907
PspN4I GGNNCC 3 cut(s) 273, 684, 966
PsuI RGATCY 1 cut(s) 271
PteI GCGCGC 1 cut(s) 289
RsaI GTAC 4 cut(s) 573, 582, 775, 966
RsaNI GTAC 4 cut(s) 572, 581, 774, 965
RseI CAYNNNNRTG 2 cut(s) 425, 438
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 5 cut(s) 111, 863, 872, 881, 896
Sau3AI GATC 5 cut(s) 206, 271, 361, 540, 847
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 4 cut(s) 49, 215, 326, 399
ScrFI CCNGG 4 cut(s) 239, 374, 735, 909
SfaNI GCATC 3 cut(s) 291, 608, 636
SmiMI CAYNNNNRTG 2 cut(s) 425, 438
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 3 cut(s) 255, 445, 789
SsiI CCGC 4 cut(s) 113, 152, 548, 962
SspI AATATT 2 cut(s) 468, 481
SspMI CTAG 9 cut(s) 147, 324, 333, 557, 585, 605, 687, 755, 840
StyD4I CCNGG 4 cut(s) 237, 372, 733, 907
TaaI ACNGT 1 cut(s) 778
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 212, 393, 746
TasI AATT 3 cut(s) 255, 445, 789
TatI WGTACW 1 cut(s) 773
TfiI GAWTC 5 cut(s) 430, 518, 916, 943, 952
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 3 cut(s) 208, 411, 427
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 5 cut(s) 110, 862, 871, 880, 895
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 89, 662
TspGWI ACGGA 1 cut(s) 909
TspRI CASTG 3 cut(s) 208, 411, 427
XbaI TCTAGA 1 cut(s) 332
XceI RCATGY 1 cut(s) 856
XspI CTAG 9 cut(s) 147, 324, 333, 557, 585, 605, 687, 755, 840
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.