pycom05g19240
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0009887
Physical Location & Seq
Forward (+)
22122915 .. 22123874
960 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19240.3

Sequence Viewer

Length: 666 bp
ATGCATTCAGTGTTCACAGCGGACGACTCCTCCGACACGTTTTGGGCTCTGTCGCCGCCGGCGGAGATGAACCGGAGCGCGTCGGAGTGGGCCTTCGAGCAGTTCCTCGACGAGTTCACGACCCCGGCCGCCACTCCTCGCCAATCGGTCGCCGAGCAATTTCCCGTTTCGTCCGCCGCCTCCTGCTCCGTCGCGTCTCAGTCGTCGACGTCGAAGCGCGACCATGTGGACGAAGAGGTAGTTGAGATCAAGAAGCCCGACCGTCATCGCCGTCGTCAACTACAACCTCCTCAGCAGCTCAATCATCCTTCTCCGCCGGCGGCGTTGGATCCAGCTCCGACGGCTCCGATTAACTCGGACCAGTACCGCGAATTTCTCAAGAACCAGCTCGATCTGGCTTGCGCAGCAGTAGCTCTCTCTCGCGCATCGTCTTTGACGCCTGTGGATTTGGGTAATCTAGCCGAGAATCCGTCGCTGGTGTCGAAGCCTTCACAGTTAGCCCCGACTCGATCGCTTGATAAAGATGCTGGTAATGCTTTGCCAGTTCCACAAAATGAAGCTGACACTAGCCCGCTTGGCGTTTCGGCTTTACCTGCTGCTCAGAGAAGAACTCCGGTGCTGAGTAAGCAAACAACGAGTGGATCGATCGAAAGAGGACTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

222

Amino Acids

23.69

Weight (kDa)

5.23

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc16I TGCGCA 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 206
AccII CGCG 5 cut(s) 80, 194, 219, 369, 423
AclWI GGATC 3 cut(s) 323, 336, 649
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 209, 437
AfaI GTAC 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 36
AluBI AGCT 5 cut(s) 298, 335, 388, 413, 560
AluI AGCT 5 cut(s) 298, 335, 388, 413, 560
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 3 cut(s) 323, 336, 649
AoxI GGCC 2 cut(s) 90, 126
ApeKI GCWGC 3 cut(s) 295, 404, 596
ApoI RAATTY 1 cut(s) 371
AspLEI GCGC 4 cut(s) 80, 219, 404, 425
AspS9I GGNCC 2 cut(s) 90, 358
AsuC2I CCSGG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 358
BamHI GGATCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 49
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 307, 416, 583
BceAI ACGGC 2 cut(s) 255, 357
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 458, 567
BfuAI ACCTGC 1 cut(s) 601
BglI GCCNNNNNGGC 1 cut(s) 576
BisI GCNGC 7 cut(s) 56, 129, 177, 296, 321, 405, 597
BlsI GCNGC 7 cut(s) 57, 130, 178, 297, 322, 406, 598
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 90, 358
BmiI GGNNCC 2 cut(s) 330, 345
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 434, 514
BplI GAGNNNNNCTC 2 cut(s) 595, 627
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 644
BsaHI GRCGYC 2 cut(s) 209, 437
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 72, 613
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse118I RCCGGY 2 cut(s) 58, 316
Bse1I ACTGG 2 cut(s) 361, 542
BseCI ATCGAT 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 4 cut(s) 212, 305, 611, 614
BseNI ACTGG 2 cut(s) 361, 542
BseRI GAGGAG 3 cut(s) 19, 126, 279
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 307, 416, 583
Bsh1236I CGCG 5 cut(s) 80, 194, 219, 369, 423
Bsh1285I CGRYCG 5 cut(s) 129, 150, 262, 512, 648
BshFI GGCC 2 cut(s) 92, 128
BshVI ATCGAT 1 cut(s) 644
BsiEI CGRYCG 5 cut(s) 129, 150, 262, 512, 648
BsiSI CCGG 5 cut(s) 59, 73, 125, 317, 614
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 92, 128
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 6 cut(s) 246, 328, 391, 509, 641, 645
BspANI GGCC 2 cut(s) 92, 128
BspCNI CTCAG 4 cut(s) 211, 304, 612, 613
BspDI ATCGAT 1 cut(s) 644
BspFNI CGCG 5 cut(s) 80, 194, 219, 369, 423
BspLI GGNNCC 2 cut(s) 330, 345
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 3 cut(s) 323, 336, 649
BsrFI RCCGGY 2 cut(s) 58, 316
BsrI ACTGG 2 cut(s) 361, 542
BssAI RCCGGY 2 cut(s) 58, 316
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 6 cut(s) 246, 328, 391, 509, 641, 645
BssNI GRCGYC 2 cut(s) 209, 437
Bst4CI ACNGT 2 cut(s) 263, 495
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 2 cut(s) 209, 437
BstC8I GCNNGC 4 cut(s) 60, 318, 400, 572
BstDEI CTNAG 4 cut(s) 198, 291, 600, 620
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 5 cut(s) 80, 194, 219, 369, 423
BstHHI GCGC 4 cut(s) 80, 219, 404, 425
BstKTI GATC 6 cut(s) 249, 331, 394, 512, 644, 648
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 6 cut(s) 246, 328, 391, 509, 641, 645
BstMCI CGRYCG 5 cut(s) 129, 150, 262, 512, 648
BstMWI GCNNNNNNNGC 7 cut(s) 341, 404, 410, 533, 576, 593, 625
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 5 cut(s) 80, 194, 219, 369, 423
BstV1I GCAGC 3 cut(s) 307, 416, 583
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 644
BsuRI GGCC 2 cut(s) 92, 128
BsuTUI ATCGAT 1 cut(s) 644
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 4 cut(s) 60, 318, 400, 572
CfoI GCGC 4 cut(s) 80, 219, 404, 425
Cfr10I RCCGGY 2 cut(s) 58, 316
Cfr13I GGNCC 2 cut(s) 90, 358
ClaI ATCGAT 1 cut(s) 644
CseI GACGC 3 cut(s) 69, 183, 445
Csp6I GTAC 1 cut(s) 364
CviAII CATG 1 cut(s) 224
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 198, 291, 600, 620
DpnI GATC 6 cut(s) 248, 330, 393, 511, 643, 647
DpnII GATC 6 cut(s) 246, 328, 391, 509, 641, 645
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 3 cut(s) 77, 163, 303
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 579
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 7 cut(s) 56, 129, 177, 296, 321, 405, 597
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 7 cut(s) 56, 129, 177, 296, 321, 405, 597
FspBI CTAG 2 cut(s) 458, 567
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 4 cut(s) 79, 218, 403, 424
GluI GCNGC 7 cut(s) 56, 129, 177, 296, 321, 405, 597
HaeIII GGCC 2 cut(s) 92, 128
HapII CCGG 5 cut(s) 59, 73, 125, 317, 614
HgaI GACGC 3 cut(s) 69, 183, 445
HhaI GCGC 4 cut(s) 80, 219, 404, 425
Hin1I GRCGYC 2 cut(s) 209, 437
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 4 cut(s) 78, 217, 402, 423
HinP1I GCGC 4 cut(s) 78, 217, 402, 423
HincII GTYRAC 2 cut(s) 207, 278
HindII GTYRAC 2 cut(s) 207, 278
HinfI GANTC 4 cut(s) 26, 466, 505, 657
HpaII CCGG 5 cut(s) 59, 73, 125, 317, 614
Hpy166II GTNNAC 5 cut(s) 15, 117, 207, 229, 278
Hpy188I TCNGA 7 cut(s) 34, 85, 339, 348, 358, 603, 662
Hpy188III TCNNGA 3 cut(s) 118, 250, 379
Hpy8I GTNNAC 5 cut(s) 15, 117, 207, 229, 278
Hpy99I CGWCG 9 cut(s) 85, 113, 194, 208, 211, 214, 276, 343, 475
HpyAV CCTTC 3 cut(s) 103, 318, 498
HpyCH4III ACNGT 2 cut(s) 263, 495
HpyCH4IV ACGT 2 cut(s) 38, 209
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 404, 410, 533, 576, 593, 625
HpyF3I CTNAG 4 cut(s) 198, 291, 600, 620
HpySE526I ACGT 2 cut(s) 38, 209
Hsp92I GRCGYC 2 cut(s) 209, 437
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 4 cut(s) 78, 217, 402, 423
KroI GCCGGC 2 cut(s) 58, 316
KroNI GCCGGC 2 cut(s) 60, 318
Kzo9I GATC 6 cut(s) 246, 328, 391, 509, 641, 645
LmnI GCTCC 4 cut(s) 75, 191, 340, 349
Lsp1109I GCAGC 3 cut(s) 307, 416, 583
LweI GCATC 2 cut(s) 434, 514
MaeI CTAG 2 cut(s) 458, 567
MaeII ACGT 2 cut(s) 38, 209
MalI GATC 6 cut(s) 248, 330, 393, 511, 643, 647
MboI GATC 6 cut(s) 246, 328, 391, 509, 641, 645
MboII GAAGA 2 cut(s) 245, 618
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 2 cut(s) 158, 371
MlyI GAGTC 3 cut(s) 20, 499, 651
MmeI TCCRAC 4 cut(s) 57, 63, 306, 362
MnlI CCTC 8 cut(s) 40, 116, 147, 190, 229, 297, 300, 647
Mph1103I ATGCAT 1 cut(s) 6
MreI CGCCGGCG 2 cut(s) 58, 316
MroNI GCCGGC 2 cut(s) 58, 316
MseI TTAA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 5 cut(s) 59, 73, 125, 317, 614
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 5 cut(s) 80, 194, 219, 369, 423
MwoI GCNNNNNNNGC 7 cut(s) 341, 404, 410, 533, 576, 593, 625
NaeI GCCGGC 2 cut(s) 60, 318
NciI CCSGG 1 cut(s) 125
NdeII GATC 6 cut(s) 246, 328, 391, 509, 641, 645
NgoMIV GCCGGC 2 cut(s) 58, 316
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 330, 345
NmeAIII GCCGAG 2 cut(s) 178, 487
NsbI TGCGCA 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 209, 479, 641
PctI GAATGC 1 cut(s) 4
PdiI GCCGGC 2 cut(s) 60, 318
PfeI GAWTC 1 cut(s) 466
PkrI GCNGC 7 cut(s) 57, 130, 178, 297, 322, 406, 598
Ple19I CGATCG 2 cut(s) 512, 648
PleI GAGTC 3 cut(s) 20, 499, 651
PpsI GAGTC 3 cut(s) 20, 499, 651
PspN4I GGNNCC 2 cut(s) 330, 345
PspPI GGNCC 2 cut(s) 90, 358
PsuI RGATCY 1 cut(s) 328
PvuI CGATCG 2 cut(s) 512, 648
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 7 cut(s) 56, 129, 177, 296, 321, 405, 597
Sau3AI GATC 6 cut(s) 246, 328, 391, 509, 641, 645
Sau96I GGNCC 2 cut(s) 90, 358
SchI GAGTC 3 cut(s) 20, 499, 651
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 49
SfaNI GCATC 2 cut(s) 434, 514
SgrAI CRCCGGYG 2 cut(s) 58, 316
SgrDI CGTCGACG 1 cut(s) 205
SinI GGWCC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 2 cut(s) 158, 371
SspMI CTAG 2 cut(s) 458, 567
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 263, 495
TaiI ACGT 2 cut(s) 41, 212
TaqI TCGA 9 cut(s) 96, 108, 206, 212, 390, 482, 508, 644, 648
TaqII GACCGA 1 cut(s) 136
TasI AATT 2 cut(s) 158, 371
TauI GCSGC 4 cut(s) 58, 131, 179, 323
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 15
TseI GCWGC 3 cut(s) 295, 404, 596
TspDTI ATGAA 2 cut(s) 83, 570
TspGWI ACGGA 2 cut(s) 178, 459
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 458, 567
ZraI GACGTC 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.