pycom05g19250
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0009887
Physical Location & Seq
Forward (+)
22124611 .. 22125449
839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19250.1

Sequence Viewer

Length: 588 bp
ATGGGTGAACTTGAGACACAGGTTGGTCAGCTAAGGGTTGAACACTCTGGGCTGTTAGAACGTCTCACTGATGTGAATCAGAAATATGATAATGCTGCTGTTGACAACAGAATATTGAGAGCTGATATTGAGACGTTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTGAAAAGAGTGACGGGGATCAATCCGCTGCTTCTAGCCATGTCAAATGCAGCAAACGCAGGCATGCCACCCGTTAGCAACCCAATGAATGCATCCACGAATGCTGCTGTGCCAATGCAACCAAACTCTAACCGGCTCTTTCATCCGGGAGTTCCTAGTATGACCGCTACCCCTCTGCATCACCAGAGATTGGAGACTGGCTTTCACGCGAACTCCCCAATCTCTCTAGTTGGGAACCGACAGGGTAATGCTGGCCAACCAGTCATCACTGGAAGCAACATGGCTCACAACTCTTCAATGCCGCACACGGGCAACACAGATCACATGCCGCAGCAGCAGCAGCCACGGCCAGGAGTGGGTGAAGCATTGCCAGGTTGGGACCCTCAGCTCCCTCATGCCGTCCCAAAGAATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

196

Amino Acids

21.01

Weight (kDa)

9.15

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_C PF12498 45 - 166 5.3e-24 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccII CGCG 1 cut(s) 377
AciI CCGC 4 cut(s) 194, 333, 470, 497
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 421, 515
AfiI CCNNNNNNNGG 4 cut(s) 358, 476, 518, 524
AgsI TTSAA 2 cut(s) 41, 465
AjnI CCWGG 2 cut(s) 517, 538
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 3 cut(s) 31, 122, 556
AluI AGCT 3 cut(s) 31, 122, 556
Alw26I GTCTC 4 cut(s) 8, 68, 125, 356
AlwI GGATC 1 cut(s) 194
AoxI GGCC 2 cut(s) 421, 515
ApeKI GCWGC 8 cut(s) 95, 196, 218, 272, 499, 502, 505, 508
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 17, 160, 341, 539
AvaII GGWCC 1 cut(s) 547
BalI TGGCCA 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 8 cut(s) 82, 183, 230, 259, 511, 514, 517, 520
BceAI ACGGC 2 cut(s) 530, 551
BciT130I CCWGG 2 cut(s) 519, 540
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 4 cut(s) 8, 68, 125, 356
BfaI CTAG 3 cut(s) 203, 324, 395
Bme1390I CCNGG 3 cut(s) 315, 519, 540
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 3 cut(s) 404, 548, 549
BmrFI CCNGG 3 cut(s) 315, 519, 540
BmsI GCATC 2 cut(s) 269, 355
Bpu10I CCTNAGC 2 cut(s) 32, 552
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 476, 518, 524
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 370, 428, 442
Bse3DI GCAATG 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 519, 540
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 260, 310
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 4 cut(s) 358, 476, 518, 524
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 3 cut(s) 370, 428, 442
BseXI GCAGC 8 cut(s) 82, 183, 230, 259, 511, 514, 517, 520
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 2 cut(s) 423, 517
BsiSI CCGG 2 cut(s) 301, 314
BslFI GGGAC 2 cut(s) 554, 560
BslI CCNNNNNNNGG 4 cut(s) 358, 476, 518, 524
BsmAI GTCTC 4 cut(s) 8, 68, 125, 356
BsmBI CGTCTC 2 cut(s) 68, 125
BsmFI GGGAC 2 cut(s) 554, 560
BsmI GAATGC 2 cut(s) 262, 274
BsnI GGCC 2 cut(s) 423, 517
Bsp143I GATC 2 cut(s) 186, 487
BspACI CCGC 4 cut(s) 194, 333, 470, 497
BspANI GGCC 2 cut(s) 423, 517
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 404, 548, 549
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 3 cut(s) 370, 428, 442
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 2 cut(s) 186, 487
Bst2UI CCWGG 2 cut(s) 519, 540
Bst6I CTCTTC 1 cut(s) 466
BstC8I GCNNGC 3 cut(s) 229, 233, 421
BstDEI CTNAG 2 cut(s) 32, 552
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 260, 310
BstFNI CGCG 1 cut(s) 377
BstKTI GATC 2 cut(s) 189, 490
BstMAI GTCTC 4 cut(s) 8, 68, 125, 356
BstMBI GATC 2 cut(s) 186, 487
BstMWI GCNNNNNNNGC 5 cut(s) 224, 502, 505, 508, 514
BstNI CCWGG 2 cut(s) 519, 540
BstNSI RCATGY 2 cut(s) 235, 496
BstSCI CCNGG 3 cut(s) 313, 517, 538
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 8 cut(s) 82, 183, 230, 259, 511, 514, 517, 520
BsuRI GGCC 2 cut(s) 423, 517
BtgI CCRYGG 1 cut(s) 512
BtsCI GGATG 2 cut(s) 260, 310
BtsIMutI CAGTG 2 cut(s) 66, 435
Cac8I GCNNGC 3 cut(s) 229, 233, 421
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 547
CviAII CATG 5 cut(s) 208, 232, 448, 493, 563
DdeI CTNAG 2 cut(s) 32, 552
DpnI GATC 2 cut(s) 188, 489
DpnII GATC 2 cut(s) 186, 487
EaeI YGGCCR 2 cut(s) 421, 515
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 517, 538
EcoT22I ATGCAT 1 cut(s) 262
Esp3I CGTCTC 2 cut(s) 68, 125
FaeI CATG 5 cut(s) 211, 235, 451, 496, 566
FaiI YATR 7 cut(s) 87, 209, 233, 329, 449, 494, 564
FaqI GGGAC 2 cut(s) 554, 560
FatI CATG 5 cut(s) 207, 231, 447, 492, 562
FokI GGATG 2 cut(s) 247, 297
FspBI CTAG 3 cut(s) 203, 324, 395
HaeIII GGCC 2 cut(s) 423, 517
HapII CCGG 2 cut(s) 301, 314
Hin1II CATG 5 cut(s) 211, 235, 451, 496, 566
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 76, 164
HpaII CCGG 2 cut(s) 301, 314
HphI GGTGA 4 cut(s) 17, 160, 341, 539
Hpy166II GTNNAC 2 cut(s) 8, 103
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 8, 103
HpyCH4IV ACGT 2 cut(s) 61, 134
HpyCH4V TGCA 4 cut(s) 218, 260, 286, 346
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 502, 505, 508, 514
HpyF3I CTNAG 2 cut(s) 32, 552
HpySE526I ACGT 2 cut(s) 61, 134
Hsp92II CATG 5 cut(s) 211, 235, 451, 496, 566
KflI GGGWCCC 1 cut(s) 547
Kzo9I GATC 2 cut(s) 186, 487
LmnI GCTCC 1 cut(s) 561
Lsp1109I GCAGC 8 cut(s) 82, 183, 230, 259, 511, 514, 517, 520
LweI GCATC 2 cut(s) 269, 355
MaeI CTAG 3 cut(s) 203, 324, 395
MaeII ACGT 2 cut(s) 61, 134
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 188, 489
MboI GATC 2 cut(s) 186, 487
MboII GAAGA 2 cut(s) 173, 453
MlsI TGGCCA 1 cut(s) 423
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 3 cut(s) 351, 561, 570
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 423
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 2 cut(s) 301, 314
MspR9I CCNGG 3 cut(s) 315, 519, 540
Mva1269I GAATGC 2 cut(s) 262, 274
MvaI CCWGG 2 cut(s) 519, 540
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 224, 502, 505, 508, 514
NciI CCSGG 1 cut(s) 315
NdeII GATC 2 cut(s) 186, 487
NlaIII CATG 5 cut(s) 211, 235, 451, 496, 566
NlaIV GGNNCC 3 cut(s) 404, 548, 549
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 2 cut(s) 235, 496
OliI CACNNNNGTG 1 cut(s) 71
PaeI GCATGC 1 cut(s) 235
PctI GAATGC 2 cut(s) 262, 274
PfeI GAWTC 2 cut(s) 76, 164
PflMI CCANNNNNTGG 1 cut(s) 358
PfoI TCCNGGA 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 2 cut(s) 517, 538
PspGI CCWGG 2 cut(s) 517, 538
PspN4I GGNNCC 3 cut(s) 404, 548, 549
PspPI GGNCC 1 cut(s) 547
PspPPI RGGWCCY 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 2 cut(s) 186, 487
Sau96I GGNCC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 315, 519, 540
SetI ASST 8 cut(s) 24, 33, 64, 124, 137, 150, 544, 558
SfaNI GCATC 2 cut(s) 269, 355
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 235
SsiI CCGC 4 cut(s) 194, 333, 470, 497
SspI AATATT 1 cut(s) 114
SspMI CTAG 3 cut(s) 203, 324, 395
StyD4I CCNGG 3 cut(s) 313, 517, 538
TaiI ACGT 2 cut(s) 64, 137
TauI GCSGC 2 cut(s) 472, 499
TfiI GAWTC 2 cut(s) 76, 164
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 2 cut(s) 73, 442
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 8 cut(s) 95, 196, 218, 272, 499, 502, 505, 508
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 269, 299
TspRI CASTG 2 cut(s) 73, 442
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 547
XceI RCATGY 2 cut(s) 235, 496
XspI CTAG 3 cut(s) 203, 324, 395
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.