pycom10g16720
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009887
Physical Location & Seq
Forward (+)
19865211 .. 19865738
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g16720.1

Sequence Viewer

Length: 528 bp
ATGTATTTGAAAAAACAAAATCAGGTGAAAATGGCAGAAGAATCTGTGAAGAGAGTGACGGGGATCAACCCGCTACTTCTAGCCATGTCAAATGTAGCTAACGCAGGCATGCCATCAGTGAACAACCCAATGAATGCATCTACAAATGCTGCTGTGCCAATGCAACCGAACTCCAACCACCTCTTTCACCCGGGAGTTCCTAGTATGACCACTACTCCTCTGCATCACCAGAGATTGGACACTGGCTTTCACGCGAACCCCCCAATCTCTCTGGTTAGGAACCGACAGAGTAATGTTGGCCAACCAGTTGTTGCTGGAAGCAACATGACTCAAAACTCTTCAATTCCGCACACAGGCAACATAGATCACATGCCGCAGCAGCAGCCGCAGCCACAGCAGCCACGGCCACAGCAGCAACAGCAGCAGCCACAGCCGCAGCAGCAGCAGCAGCAGCCACGGCCAGGAGTGGGTGAAGCATTGCCGGGATGGGACCCTCAGGTCCCTCACGCCGTCCCAAAGAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

176

Amino Acids

19.18

Weight (kDa)

10.36

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_C PF12498 8 - 125 1.3e-21 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 254
AciI CCGC 5 cut(s) 71, 347, 374, 386, 434
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 3 cut(s) 298, 404, 458
AfiI CCNNNNNNNGG 4 cut(s) 235, 353, 461, 467
AgsI TTSAA 2 cut(s) 10, 342
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 3 cut(s) 298, 404, 458
AspS9I GGNCC 2 cut(s) 490, 499
AsuC2I CCSGG 3 cut(s) 191, 192, 483
AsuHPI GGTGA 4 cut(s) 37, 179, 218, 482
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 2 cut(s) 490, 499
AxyI CCTNAGG 1 cut(s) 495
BalI TGGCCA 1 cut(s) 300
BccI CCATC 2 cut(s) 121, 480
BceAI ACGGC 3 cut(s) 419, 473, 494
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 3 cut(s) 191, 192, 483
BfaI CTAG 2 cut(s) 80, 201
Bme1390I CCNGG 4 cut(s) 191, 192, 462, 483
Bme18I GGWCC 2 cut(s) 490, 499
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 490, 499
BmiI GGNNCC 4 cut(s) 281, 491, 492, 501
BmrFI CCNGG 4 cut(s) 191, 192, 462, 483
BmsI GCATC 2 cut(s) 146, 232
BpuMI CCSGG 3 cut(s) 191, 192, 483
BsaJI CCNNGG 3 cut(s) 190, 401, 455
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 4 cut(s) 235, 353, 461, 467
Bse1I ACTGG 2 cut(s) 247, 305
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 190, 401, 455
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 4 cut(s) 235, 353, 461, 467
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 247, 305
BseRI GAGGAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 300, 406, 460
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 191, 482
BslFI GGGAC 3 cut(s) 485, 497, 503
BslI CCNNNNNNNGG 4 cut(s) 235, 353, 461, 467
BsmFI GGGAC 3 cut(s) 485, 497, 503
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 300, 406, 460
BsoBI CYCGRG 1 cut(s) 190
Bsp143I GATC 2 cut(s) 63, 364
BspACI CCGC 5 cut(s) 71, 347, 374, 386, 434
BspANI GGCC 3 cut(s) 300, 406, 460
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 4 cut(s) 281, 491, 492, 501
BspPI GGATC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 2 cut(s) 247, 305
BssECI CCNNGG 3 cut(s) 190, 401, 455
BssMI GATC 2 cut(s) 63, 364
Bst2UI CCWGG 1 cut(s) 462
Bst6I CTCTTC 2 cut(s) 44, 343
BstC8I GCNNGC 2 cut(s) 106, 110
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 2 cut(s) 401, 455
BstF5I GGATG 1 cut(s) 491
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 2 cut(s) 66, 367
BstMBI GATC 2 cut(s) 63, 364
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 2 cut(s) 112, 373
BstSCI CCNGG 4 cut(s) 189, 190, 460, 481
BstUI CGCG 1 cut(s) 254
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 3 cut(s) 300, 406, 460
BtgI CCRYGG 2 cut(s) 401, 455
BtsCI GGATG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 123, 240
Cac8I GCNNGC 2 cut(s) 106, 110
Cfr13I GGNCC 2 cut(s) 490, 499
Cfr9I CCCGGG 1 cut(s) 190
CviAII CATG 4 cut(s) 85, 109, 325, 370
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 65, 366
DpnII GATC 2 cut(s) 63, 364
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
EaeI YGGCCR 3 cut(s) 298, 404, 458
Eam1104I CTCTTC 2 cut(s) 44, 343
EarI CTCTTC 2 cut(s) 44, 343
Eco47I GGWCC 2 cut(s) 490, 499
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 490, 499
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 139
FaeI CATG 4 cut(s) 88, 112, 328, 373
FaiI YATR 6 cut(s) 86, 110, 206, 326, 362, 371
FaqI GGGAC 3 cut(s) 485, 497, 503
FatI CATG 4 cut(s) 84, 108, 324, 369
FauI CCCGC 1 cut(s) 78
FokI GGATG 1 cut(s) 498
FspBI CTAG 2 cut(s) 80, 201
HaeIII GGCC 3 cut(s) 300, 406, 460
HapII CCGG 2 cut(s) 191, 482
Hin1II CATG 4 cut(s) 88, 112, 328, 373
HinfI GANTC 2 cut(s) 41, 328
HpaII CCGG 2 cut(s) 191, 482
HphI GGTGA 4 cut(s) 37, 179, 218, 482
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 137, 163, 223
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 4 cut(s) 88, 112, 328, 373
KflI GGGWCCC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 63, 364
LweI GCATC 2 cut(s) 146, 232
MaeI CTAG 2 cut(s) 80, 201
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 65, 366
MboI GATC 2 cut(s) 63, 364
MboII GAAGA 3 cut(s) 50, 61, 330
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 191, 228, 504, 513
Mox20I TGGCCA 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 139
MscI TGGCCA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 2 cut(s) 191, 482
MspR9I CCNGG 4 cut(s) 191, 192, 462, 483
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 254
NciI CCSGG 3 cut(s) 191, 192, 483
NdeII GATC 2 cut(s) 63, 364
NlaIII CATG 4 cut(s) 88, 112, 328, 373
NlaIV GGNNCC 4 cut(s) 281, 491, 492, 501
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 2 cut(s) 112, 373
PaeI GCATGC 1 cut(s) 112
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PpuMI RGGWCCY 2 cut(s) 490, 499
Psp5II RGGWCCY 2 cut(s) 490, 499
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 4 cut(s) 281, 491, 492, 501
PspPI GGNCC 2 cut(s) 490, 499
PspPPI RGGWCCY 2 cut(s) 490, 499
Sau3AI GATC 2 cut(s) 63, 364
Sau96I GGNCC 2 cut(s) 490, 499
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 4 cut(s) 191, 192, 462, 483
SetI ASST 4 cut(s) 27, 100, 183, 501
SfaNI GCATC 2 cut(s) 146, 232
SinI GGWCC 2 cut(s) 490, 499
SmaI CCCGGG 1 cut(s) 192
SphI GCATGC 1 cut(s) 112
Sse9I AATT 1 cut(s) 342
SsiI CCGC 5 cut(s) 71, 347, 374, 386, 434
SspMI CTAG 2 cut(s) 80, 201
StyD4I CCNGG 4 cut(s) 189, 190, 460, 481
TasI AATT 1 cut(s) 342
TauI GCSGC 3 cut(s) 376, 388, 436
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 2 cut(s) 123, 247
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 146
TspMI CCCGGG 1 cut(s) 190
TspRI CASTG 2 cut(s) 123, 247
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 490, 499
XceI RCATGY 2 cut(s) 112, 373
XmaI CCCGGG 1 cut(s) 190
XspI CTAG 2 cut(s) 80, 201
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.