RLG00000012286
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009887
Physical Location & Seq
Reverse (-)
17157308 .. 17159552
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012286

Sequence Viewer

Length: 1338 bp
ATGCATTCGGCGTTTCGGGCCGACGAAATCTCCGACATCACCGACACCTTCTGGGCCTCCTCCACGTCTCTCCCGATGAATCGCAGCGACTCCGAGTGGGCCTTCGAGCAGTTTCTAGAGGAAGTCGTCTCGGCCCCACCACCACCCCCCGCCGCCGATCAATTGACCGTCTCCTCCGTCGCCTCCGCTCACTCCTCGACGTCGAAGCGCGAGGAGGTGGATGAGGAGGTCGTCGAGATCAAGAAGCCCGATCGTCATCTCAATTGTCCGCCGCCTCCTCCGCCGTCCACGGCGCCGATTAATTCGGATCAGTACCACCGCGAGCTGCTCAAGAGCAAGCTCGATCTCGCGTGTGCTGCAGTCGCTCTCACTCGGGCTTCGTCTTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGGTTATGGTTTGCCACAAAGTGATGCTGATACTAGCCCGCTAGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCGAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGTTAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCTAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCGATGCAACCAACCTCCAATCATCTCTTTCATCCGGTGGCTTCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTCCTCTAGTTGGAAACCAACAGAGTACTGTTGGGCAAGCAATTGTGAGGGGAAGCAACACGACTGAAGTACCTTCAGTTCAACACACAGCTAGCATAGATCACATGCAGCAGCAGCAGCAGCAACAGCAACAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCATGTGAAGCATTGCCAGTTTGGAACCCTCAGATTCCCCATGCAGTCCCCAAGAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

446

Amino Acids

48.46

Weight (kDa)

6.17

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 216 - 269 1e-13 bZIP transcription factor
bZIP_2 PF07716 217 - 262 2e-08 Basic region leucine zipper
bZIP_C PF12498 284 - 410 5.1e-22 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 5 cut(s) 210, 321, 350, 654, 656
AclWI GGATC 5 cut(s) 315, 577, 629, 642, 911
AcoI YGGCCR 2 cut(s) 742, 1262
AcuI CTGAAG 2 cut(s) 1170, 1197
AcyI GRCGYC 2 cut(s) 200, 293
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 5 cut(s) 314, 936, 945, 1138, 1182
AfiI CCNNNNNNNGG 1 cut(s) 1121
AgsI TTSAA 3 cut(s) 388, 617, 1193
AjiI CACGTC 2 cut(s) 66, 790
AjnI CCWGG 4 cut(s) 600, 735, 1096, 1264
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 7 cut(s) 325, 340, 473, 554, 686, 1092, 1202
AluI AGCT 7 cut(s) 325, 340, 473, 554, 686, 1092, 1202
Alw26I GTCTC 5 cut(s) 72, 133, 175, 725, 842
AlwI GGATC 5 cut(s) 315, 577, 629, 642, 911
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 6 cut(s) 18, 54, 99, 132, 742, 1262
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 5 cut(s) 210, 295, 415, 654, 656
AspS9I GGNCC 4 cut(s) 18, 54, 99, 133
AsuHPI GGTGA 3 cut(s) 31, 877, 1064
AsuNHI GCTAGC 1 cut(s) 1202
AvaI CYCGRG 1 cut(s) 372
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BalI TGGCCA 1 cut(s) 744
BamHI GGATCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 902
BceAI ACGGC 2 cut(s) 268, 306
BcgI CGANNNNNNTGC 6 cut(s) 646, 680, 746, 780, 1241, 1275
BciT130I CCWGG 4 cut(s) 602, 737, 1098, 1266
BciVI GTATCC 1 cut(s) 976
BcoDI GTCTC 5 cut(s) 72, 133, 175, 725, 842
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 544
BfuI GTATCC 1 cut(s) 976
BglI GCCNNNNNGGC 1 cut(s) 519
BmcAI AGTACT 1 cut(s) 1138
Bme1390I CCNGG 4 cut(s) 602, 737, 1098, 1266
BmeT110I CYCGRG 1 cut(s) 372
BmgBI CACGTC 2 cut(s) 66, 790
BmgT120I GGNCC 4 cut(s) 18, 54, 99, 133
BmiI GGNNCC 4 cut(s) 135, 294, 636, 1301
BmrFI CCNGG 4 cut(s) 602, 737, 1098, 1266
BmsI GCATC 4 cut(s) 490, 654, 971, 999
BmtI GCTAGC 1 cut(s) 1206
BpiI GAAGAC 1 cut(s) 902
BpuEI CTTGAG 2 cut(s) 314, 749
BsaBI GATNNNNATC 1 cut(s) 255
BsaHI GRCGYC 2 cut(s) 200, 293
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 3 cut(s) 288, 735, 1096
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 2 cut(s) 564, 1292
Bse3DI GCAATG 1 cut(s) 1286
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 4 cut(s) 602, 737, 1098, 1266
BseDI CCNNGG 3 cut(s) 288, 735, 1096
BseGI GGATG 4 cut(s) 226, 595, 669, 1036
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMI GCAATG 1 cut(s) 1286
BseMII CTCAG 2 cut(s) 569, 1319
BseNI ACTGG 2 cut(s) 564, 1292
BsePI GCGCGC 1 cut(s) 652
BseRI GAGGAG 7 cut(s) 49, 163, 184, 227, 239, 267, 673
BsgI GTGCAG 2 cut(s) 441, 750
Bsh1236I CGCG 5 cut(s) 210, 321, 350, 654, 656
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 6 cut(s) 20, 56, 101, 134, 744, 1264
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 527, 1040
BslFI GGGAC 1 cut(s) 1307
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 5 cut(s) 72, 133, 175, 725, 842
BsmBI CGTCTC 3 cut(s) 72, 133, 175
BsmFI GGGAC 1 cut(s) 1307
BsmI GAATGC 2 cut(s) 4, 522
BsnI GGCC 6 cut(s) 20, 56, 101, 134, 744, 1264
Bso31I GGTCTC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 372
BspANI GGCC 6 cut(s) 20, 56, 101, 134, 744, 1264
BspCNI CTCAG 2 cut(s) 568, 1318
BspFNI CGCG 5 cut(s) 210, 321, 350, 654, 656
BspLI GGNNCC 4 cut(s) 135, 294, 636, 1301
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 544
BspOI GCTAGC 1 cut(s) 1206
BspPI GGATC 5 cut(s) 315, 577, 629, 642, 911
BspT107I GGYRCC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 725
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 1286
BsrI ACTGG 2 cut(s) 564, 1292
BssECI CCNNGG 3 cut(s) 288, 735, 1096
BssHII GCGCGC 1 cut(s) 652
BssNI GRCGYC 2 cut(s) 200, 293
Bst2UI CCWGG 4 cut(s) 602, 737, 1098, 1266
Bst4CI ACNGT 3 cut(s) 169, 771, 1141
BstACI GRCGYC 2 cut(s) 200, 293
BstC8I GCNNGC 8 cut(s) 323, 338, 515, 654, 742, 955, 1149, 1204
BstDEI CTNAG 3 cut(s) 555, 749, 1305
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 4 cut(s) 226, 595, 669, 1036
BstFNI CGCG 5 cut(s) 210, 321, 350, 654, 656
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 5 cut(s) 210, 295, 415, 654, 656
BstMAI GTCTC 5 cut(s) 72, 133, 175, 725, 842
BstMCI CGRYCG 1 cut(s) 253
BstNI CCWGG 4 cut(s) 602, 737, 1098, 1266
BstNSI RCATGY 1 cut(s) 1219
BstSCI CCNGG 4 cut(s) 600, 735, 1096, 1264
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 5 cut(s) 210, 321, 350, 654, 656
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuI GTATCC 1 cut(s) 976
BsuRI GGCC 6 cut(s) 20, 56, 101, 134, 744, 1264
BtgI CCRYGG 1 cut(s) 288
BtrI CACGTC 2 cut(s) 66, 790
BtsCI GGATG 4 cut(s) 226, 595, 669, 1036
BtsIMutI CAGTG 3 cut(s) 571, 767, 783
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 8 cut(s) 323, 338, 515, 654, 742, 955, 1149, 1204
CfoI GCGC 5 cut(s) 210, 295, 415, 654, 656
Cfr13I GGNCC 4 cut(s) 18, 54, 99, 133
CseI GACGC 1 cut(s) 699
Csp6I GTAC 5 cut(s) 313, 935, 944, 1137, 1181
CviAII CATG 5 cut(s) 925, 958, 1216, 1278, 1316
CviQI GTAC 5 cut(s) 313, 935, 944, 1137, 1181
DdeI CTNAG 3 cut(s) 555, 749, 1305
DinI GGCGCC 1 cut(s) 294
DraIII CACNNNGTG 1 cut(s) 497
EaeI YGGCCR 2 cut(s) 742, 1262
EciI GGCGGA 2 cut(s) 258, 270
Eco31I GGTCTC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 1170, 1197
Eco88I CYCGRG 1 cut(s) 372
EcoRII CCWGG 4 cut(s) 600, 735, 1096, 1264
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
Esp3I CGTCTC 3 cut(s) 72, 133, 175
FaeI CATG 5 cut(s) 928, 961, 1219, 1281, 1319
FaqI GGGAC 1 cut(s) 1307
FatI CATG 5 cut(s) 924, 957, 1215, 1277, 1315
FauI CCCGC 4 cut(s) 157, 469, 522, 918
FokI GGATG 4 cut(s) 233, 602, 676, 1023
GlaI GCGC 5 cut(s) 209, 294, 414, 653, 655
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 6 cut(s) 20, 56, 101, 134, 744, 1264
HapII CCGG 2 cut(s) 527, 1040
HgaI GACGC 1 cut(s) 699
HhaI GCGC 5 cut(s) 210, 295, 415, 654, 656
Hin1I GRCGYC 2 cut(s) 200, 293
Hin1II CATG 5 cut(s) 928, 961, 1219, 1281, 1319
Hin6I GCGC 5 cut(s) 208, 293, 413, 652, 654
HinP1I GCGC 5 cut(s) 208, 293, 413, 652, 654
HpaII CCGG 2 cut(s) 527, 1040
HphI GGTGA 3 cut(s) 31, 877, 1064
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 7 cut(s) 34, 94, 307, 546, 558, 589, 1308
Hpy188III TCNNGA 9 cut(s) 73, 116, 235, 241, 331, 677, 696, 728, 889
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 6 cut(s) 26, 182, 202, 205, 236, 577
HpyAV CCTTC 5 cut(s) 58, 112, 450, 599, 1194
HpyCH4III ACNGT 3 cut(s) 169, 771, 1141
HpyCH4IV ACGT 3 cut(s) 65, 200, 789
HpyCH4V TGCA 7 cut(s) 4, 359, 458, 767, 1012, 1219, 1319
HpyF3I CTNAG 3 cut(s) 555, 749, 1305
HpySE526I ACGT 3 cut(s) 65, 200, 789
Hsp92I GRCGYC 2 cut(s) 200, 293
Hsp92II CATG 5 cut(s) 928, 961, 1219, 1281, 1319
HspAI GCGC 5 cut(s) 208, 293, 413, 652, 654
KasI GGCGCC 1 cut(s) 292
LweI GCATC 4 cut(s) 490, 654, 971, 999
MaeII ACGT 3 cut(s) 65, 200, 789
MaeIII GTNAC 1 cut(s) 448
MbiI CCGCTC 1 cut(s) 188
MboII GAAGA 5 cut(s) 711, 714, 837, 890, 907
MfeI CAATTG 3 cut(s) 161, 262, 1152
MflI RGATCY 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 6 cut(s) 161, 262, 301, 618, 808, 1152
MluNI TGGCCA 1 cut(s) 744
Mly113I GGCGCC 1 cut(s) 293
MlyI GAGTC 5 cut(s) 83, 412, 578, 689, 762
MmeI TCCRAC 2 cut(s) 57, 1102
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 744
MseI TTAA 3 cut(s) 300, 773, 854
MslI CAYNNNNRTG 2 cut(s) 788, 801
Msp20I TGGCCA 1 cut(s) 744
MspI CCGG 2 cut(s) 527, 1040
MspR9I CCNGG 4 cut(s) 602, 737, 1098, 1266
MunI CAATTG 3 cut(s) 161, 262, 1152
Mva1269I GAATGC 2 cut(s) 4, 522
MvaI CCWGG 4 cut(s) 602, 737, 1098, 1266
MvnI CGCG 5 cut(s) 210, 321, 350, 654, 656
NarI GGCGCC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 1202
NlaIII CATG 5 cut(s) 928, 961, 1219, 1281, 1319
NlaIV GGNNCC 4 cut(s) 135, 294, 636, 1301
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1219
OliI CACNNNNGTG 1 cut(s) 788
PauI GCGCGC 1 cut(s) 652
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 71
PctI GAATGC 2 cut(s) 4, 522
PfeI GAWTC 6 cut(s) 79, 793, 881, 1111, 1273, 1309
Ple19I CGATCG 1 cut(s) 253
PleI GAGTC 5 cut(s) 83, 412, 578, 688, 761
PluTI GGCGCC 1 cut(s) 296
PpsI GAGTC 5 cut(s) 83, 412, 578, 688, 761
PshBI ATTAAT 1 cut(s) 300
Psp6I CCWGG 4 cut(s) 600, 735, 1096, 1264
PspGI CCWGG 4 cut(s) 600, 735, 1096, 1264
PspN4I GGNNCC 4 cut(s) 135, 294, 636, 1301
PspPI GGNCC 4 cut(s) 18, 54, 99, 133
PsrI GAACNNNNNNTAC 2 cut(s) 1173, 1205
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 634
PteI GCGCGC 1 cut(s) 652
PvuI CGATCG 1 cut(s) 253
RsaI GTAC 5 cut(s) 314, 936, 945, 1138, 1182
RsaNI GTAC 5 cut(s) 313, 935, 944, 1137, 1181
RseI CAYNNNNRTG 2 cut(s) 788, 801
SaqAI TTAA 3 cut(s) 300, 773, 854
Sau96I GGNCC 4 cut(s) 18, 54, 99, 133
ScaI AGTACT 1 cut(s) 1138
SchI GAGTC 5 cut(s) 83, 412, 578, 689, 762
ScrFI CCNGG 4 cut(s) 602, 737, 1098, 1266
SfaNI GCATC 4 cut(s) 490, 654, 971, 999
SfcI CTRYAG 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 788, 801
SmlI CTYRAG 2 cut(s) 329, 728
SmoI CTYRAG 2 cut(s) 329, 728
Sse9I AATT 6 cut(s) 161, 262, 301, 618, 808, 1152
SspDI GGCGCC 1 cut(s) 292
SspI AATATT 2 cut(s) 831, 844
StyD4I CCNGG 4 cut(s) 600, 735, 1096, 1264
TaaI ACNGT 3 cut(s) 169, 771, 1141
TaiI ACGT 3 cut(s) 68, 203, 792
TaqI TCGA 8 cut(s) 105, 197, 203, 234, 342, 575, 756, 1109
TasI AATT 6 cut(s) 161, 262, 301, 618, 808, 1152
TatI WGTACW 1 cut(s) 1136
TauI GCSGC 2 cut(s) 155, 274
TfiI GAWTC 6 cut(s) 79, 793, 881, 1111, 1273, 1309
Tru1I TTAA 3 cut(s) 300, 773, 854
Tru9I TTAA 3 cut(s) 300, 773, 854
TscAI CASTG 3 cut(s) 571, 774, 790
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 92, 452, 1025
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 571, 774, 790
VspI ATTAAT 1 cut(s) 300
XbaI TCTAGA 2 cut(s) 115, 695
XceI RCATGY 1 cut(s) 1219
ZraI GACGTC 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 1138
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.