Rorug06G0205200
BZIP Family

Light-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009887
Physical Location & Seq
Forward (+)
32716255 .. 32718146
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0205200.1

Sequence Viewer

Length: 699 bp
ATGAAGTTCTCCATGTTCTTCTTCCTCTGTTTGCTCGCTTTACTCTTCCAGCATTCTCACTCCACCACAATACTAGTGGATGGAGTTTCAGAGTGGAAGAACCCTACTGTTCATATTGGAGACTCCATCATTTTCAAGCACAAGTATCACTACAACCTCTACATTTTCCAGAACCAAAGAGCCTTCAATGTCTGCAATTTCACTCGAGCCACACTTCTTAATAAACCCGATTCCACATCCTATACGTGGCACCCATCACGGCCCGGTTTCTTCTACTTCTCCTTCAACAACGGTTCTCTGCTCAATACATGCCAAGACACACAAAAGCTTGCCATAAAAGTTGCTTTAACAACAATGGCTCCAGTGGCAGCCCCAGAACCCAGTTCCAAGACAGGTTCTGGTGGCAGTGGCGGCAGTGGTGGTGGTGTAGTGTCATCTTCTCCAACATATCCATGGCCTTTCCAACCTCACCAAGCATCCTTATCGCCAAGTCCAGGGCCAAGTGTCGGCTCTTTAATTCCAAATAAAGGTGCTGGCATGCCATTTATCAACAGCAACCCTGCTGTTCCTTTGCCTACTGGTGAAGTTGATTCTGCTACAATTCGCCCGATACCAACATCTGGCCACCAGGGACAGGTGTTGGTGGGGTTATTTGCTGCGCAAATGGCTCTATTTAGTGTGGTTCTCTTGATGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_C

Protein Analysis

232

Amino Acids

24.97

Weight (kDa)

9.22

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54620 AT3G54620 AT3G54620
fragaria_vesca FvH4_2g22580 FvH4_2g22580
malus_domestica MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica Prupe.8G232800_v2.0.a1
pyrus_communis pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis RchiOBHm_Chr6g0289641
rosa_laevigata RLG00000012286
rosa_multiflora Rmu_sc0005376.1_g000012
rosa_roxburghii Rroxscaffold_7G00177780
rosa_rugosa Rorug06G0205200
rosa_samantha Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana Rw6G027330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 622
AfiI CCNNNNNNNGG 6 cut(s) 246, 494, 506, 527, 620, 634
AgsI TTSAA 3 cut(s) 136, 187, 286
AhlI ACTAGT 1 cut(s) 73
AjnI CCWGG 2 cut(s) 493, 627
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 4 cut(s) 260, 455, 497, 622
ApeKI GCWGC 2 cut(s) 368, 656
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 261, 497
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 461, 593
AvaI CYCGRG 1 cut(s) 204
BalI TGGCCA 1 cut(s) 624
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 380, 643
BccI CCATC 3 cut(s) 74, 134, 262
BceAI ACGGC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciT130I CCWGG 2 cut(s) 495, 629
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 1 cut(s) 74
BisI GCNGC 3 cut(s) 369, 412, 657
BlsI GCNGC 3 cut(s) 370, 413, 658
Bme1390I CCNGG 3 cut(s) 264, 495, 629
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 261, 497
BmiI GGNNCC 2 cut(s) 251, 360
BmrFI CCNGG 3 cut(s) 264, 495, 629
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 485, 681
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 452, 494, 628
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 494, 506, 527, 620, 634
Bse1I ACTGG 3 cut(s) 362, 381, 583
BseBI CCWGG 2 cut(s) 495, 629
BseDI CCNNGG 3 cut(s) 452, 494, 628
BseGI GGATG 3 cut(s) 85, 236, 476
BseLI CCNNNNNNNGG 6 cut(s) 246, 494, 506, 527, 620, 634
BseNI ACTGG 3 cut(s) 362, 381, 583
BseXI GCAGC 2 cut(s) 380, 643
BshFI GGCC 4 cut(s) 262, 457, 499, 624
BshNI GGYRCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 6 cut(s) 246, 494, 506, 527, 620, 634
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 4 cut(s) 262, 457, 499, 624
BsoBI CYCGRG 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 411
BspANI GGCC 4 cut(s) 262, 457, 499, 624
BspLI GGNNCC 2 cut(s) 251, 360
BspT107I GGYRCC 1 cut(s) 249
BsrI ACTGG 3 cut(s) 362, 381, 583
BssECI CCNNGG 3 cut(s) 452, 494, 628
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 495, 629
Bst4CI ACNGT 2 cut(s) 109, 293
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 36, 330, 535, 539
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 85, 236, 476
BstHHI GCGC 1 cut(s) 661
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 3 cut(s) 365, 411, 665
BstNI CCWGG 2 cut(s) 495, 629
BstNSI RCATGY 2 cut(s) 312, 541
BstSCI CCNGG 3 cut(s) 262, 493, 627
BstV1I GCAGC 2 cut(s) 380, 643
BsuRI GGCC 4 cut(s) 262, 457, 499, 624
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 3 cut(s) 85, 236, 476
BtsI GCAGTG 2 cut(s) 412, 421
BtsIMutI CAGTG 3 cut(s) 369, 412, 421
Cac8I GCNNGC 4 cut(s) 36, 330, 535, 539
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 261, 497
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 4 cut(s) 13, 309, 453, 538
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 493, 627
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 4 cut(s) 16, 312, 456, 541
FaiI YATR 8 cut(s) 14, 114, 243, 310, 335, 448, 454, 539
FaqI GGGAC 1 cut(s) 645
FatI CATG 4 cut(s) 12, 308, 452, 537
Fnu4HI GCNGC 3 cut(s) 369, 412, 657
FokI GGATG 3 cut(s) 92, 223, 463
Fsp4HI GCNGC 3 cut(s) 369, 412, 657
FspBI CTAG 1 cut(s) 74
FspI TGCGCA 1 cut(s) 660
GlaI GCGC 1 cut(s) 660
GluI GCNGC 3 cut(s) 369, 412, 657
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 4 cut(s) 262, 457, 499, 624
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 661
Hin1II CATG 4 cut(s) 16, 312, 456, 541
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 122, 230, 590
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 461, 593
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 169, 688
HpyAV CCTTC 2 cut(s) 193, 292
HpyCH4III ACNGT 2 cut(s) 109, 293
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 411, 665
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 4 cut(s) 16, 312, 456, 541
HspAI GCGC 1 cut(s) 659
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 2 cut(s) 380, 643
LweI GCATC 2 cut(s) 485, 681
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 245
MboII GAAGA 6 cut(s) 10, 13, 37, 109, 262, 429
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 3 cut(s) 196, 516, 600
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 467, 487
MnlI CCTC 3 cut(s) 35, 167, 477
Mox20I TGGCCA 1 cut(s) 624
MscI TGGCCA 1 cut(s) 624
MseI TTAA 3 cut(s) 219, 347, 515
MslI CAYNNNNRTG 1 cut(s) 451
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 3 cut(s) 264, 495, 629
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 2 cut(s) 495, 629
MwoI GCNNNNNNNGC 3 cut(s) 365, 411, 665
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 452
NlaIII CATG 4 cut(s) 16, 312, 456, 541
NlaIV GGNNCC 2 cut(s) 251, 360
NsbI TGCGCA 1 cut(s) 660
NspI RCATGY 2 cut(s) 312, 541
PaeI GCATGC 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 204
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 230, 590
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 3 cut(s) 370, 413, 658
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 493, 627
PspGI CCWGG 2 cut(s) 493, 627
PspN4I GGNNCC 2 cut(s) 251, 360
PspPI GGNCC 2 cut(s) 261, 497
PspXI VCTCGAGB 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 3 cut(s) 219, 347, 515
SatI GCNGC 3 cut(s) 369, 412, 657
Sau96I GGNCC 2 cut(s) 261, 497
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 264, 495, 629
SetI ASST 7 cut(s) 159, 248, 330, 397, 469, 532, 639
SfaNI GCATC 2 cut(s) 485, 681
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SpeI ACTAGT 1 cut(s) 73
SphI GCATGC 1 cut(s) 541
Sse9I AATT 3 cut(s) 196, 516, 600
SsiI CCGC 1 cut(s) 411
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 262, 493, 627
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 109, 293
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 205
TasI AATT 3 cut(s) 196, 516, 600
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 2 cut(s) 230, 590
Tru1I TTAA 3 cut(s) 219, 347, 515
Tru9I TTAA 3 cut(s) 219, 347, 515
TscAI CASTG 3 cut(s) 369, 412, 421
TseI GCWGC 2 cut(s) 368, 656
TspDTI ATGAA 2 cut(s) 17, 101
TspRI CASTG 3 cut(s) 369, 412, 421
Van91I CCANNNNNTGG 1 cut(s) 620
XceI RCATGY 2 cut(s) 312, 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 450
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.