Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009887

Physical Location & Seq

Genomic Coordinates Forward (+)

51685490 .. 51687761

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGCATTCGGCGTTTCCGGCCGACGAAATTCCCGACATCTCTGACACCTTCTGGGCCTCCTCGCCGTCTCTCCCGATGAATCGCAGCGCCTCCGAGTGGGCCTTCGAGCAGTTTCTAGAGGAAGTCGTCTCCGCCCCACCACCACCACCACCACCCCCCGCCGCCGATCAATTGACCGTCTCCTCCGCTCACTCCTCGACGTCGAAGCGCGAGGAGGTCGATGAGGAGGTCGTCGAGATCAAGAAGCCCGATCGTCATCTCAATTGTCCGCCGCCTCCTCCTCCGCCGTCCACGGCGCCGATTAATTCGGATCAGTACCGCCGCGAGCTGCTCAAGAGCAAGCTCGATCTCGCGTGTGCTGCAGTCGCTCTCACTCGGGCTTCGTCGTTGAAGCCTGTGGGTTCTGGTAATGTAGCGCAGACTCAATCTATATTGCCACAGCCTTCGCAAGTGACCTCTGCACTTCATAATAAAGCTGCGGGTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCCGGCTTTACCTGCTATTCAGAAAAAAGCTCAGACAACCAGTGGATCGTCGAAAGATGACTCGGATGATGATGACCTGGAAGGCGACATTGAAATTACCGAGAATATGGATCCTGCTGATGTGAAGCGCGCGAGGAGGATGCTGTCAAATCGGGAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAAATGACTGATCTTGAGACCCAGGCTGGCCAACTAAGAGTCGAAAACTCTGCACTGTTAAAACAACTCACTGACGTGAATCACAAATATGATAATTCAGTCGTTGATAGAAGAATATTAGAAGCCAATATTGAGACATTAAGAGCAAAGGTGAAAATGGCAGAAGAATCTGTCAAGAGGAAGACAGGGATCAACCCGCTACTTCTAGCCATGTCTAATGTACCAAATGTACCTAGAGCAAGCATGGCATCACTAGGCAATCCAATGGATACATCTGCCAATGCTTCTGTGCCAATGCAACCAACCTCCAATCATCTCTTTCATCCAGTGGCTCCTAGTATCAACACTCCACCACATCACCAGAGATTAGATACCAGCTTCCCTGGAAACCCCTCGATTCCTCTAGTTGGAAACCAACAGAGTACCGTTGGGCAACCAATTGTGAGGGGAAGCAACACGACTGAAGTACCTTCAGTTCAGCACACAGCTAGCATAGATCACATGCACCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCACCAGCAACAGCACCAGCAGCAACTTCGGCCAGGAGTGAATCCGTGTGAAGCATTGCCAGTTTGGAACCCTCAGATTCCCCATGCAGTCCCCAAGAATAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

456

Amino Acids

49.84

Weight (kDa)

6.44

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	217 - 270	1.1e-13	bZIP transcription factor
bZIP_2	PF07716	218 - 263	2.1e-08	Basic region leucine zipper
bZIP_C	PF12498	285 - 410	6.1e-20	Basic leucine-zipper C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54620 AT3G54620 AT3G54620
fragaria_vesca	FvH4_2g22580 FvH4_2g22580
malus_domestica	MD05G1206400.v1.1 MD10G1193400.v1.1
prunus_persica	Prupe.8G232800_v2.0.a1
pyrus_communis	pycom05g19240 pycom05g19250 pycom10g16720
rosa_chinensis	RchiOBHm_Chr6g0289641
rosa_laevigata	RLG00000012286
rosa_multiflora	Rmu_sc0005376.1_g000012
rosa_roxburghii	Rroxscaffold_7G00177780
rosa_rugosa	Rorug06G0205200
rosa_samantha	Rh6AG316900 Rh6BG323500 Rh6CG330100 Rh6DG315300
rosa_wichuraiana	Rw6G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	5 cut(s)	210, 324, 353, 657, 659
AclWI	GGATC	5 cut(s)	318, 580, 632, 645, 914
AcoI	YGGCCR	3 cut(s)	18, 745, 1292
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	1173, 1200
AcyI	GRCGYC	2 cut(s)	200, 296
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	5 cut(s)	317, 939, 948, 1141, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	96, 1124
AgsI	TTSAA	2 cut(s)	391, 620
AjiI	CACGTC	1 cut(s)	793
AjnI	CCWGG	4 cut(s)	603, 738, 1099, 1294
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	7 cut(s)	328, 343, 476, 557, 689, 1095, 1205
AluI	AGCT	7 cut(s)	328, 343, 476, 557, 689, 1095, 1205
Alw26I	GTCTC	5 cut(s)	72, 133, 184, 728, 845
AlwI	GGATC	5 cut(s)	318, 580, 632, 645, 914
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	5 cut(s)	18, 54, 99, 745, 1292
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	6 cut(s)	89, 210, 298, 418, 657, 659
AspS9I	GGNCC	2 cut(s)	54, 99
AsuHPI	GGTGA	2 cut(s)	880, 1067
AsuNHI	GCTAGC	1 cut(s)	1205
AvaI	CYCGRG	1 cut(s)	375
BaeI	ACNNNNGTAYC	2 cut(s)	1167, 1200
BalI	TGGCCA	1 cut(s)	747
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	905
BceAI	ACGGC	3 cut(s)	49, 271, 309
BcgI	CGANNNNNNTGC	6 cut(s)	649, 683, 749, 783, 1271, 1305
BciT130I	CCWGG	4 cut(s)	605, 740, 1101, 1296
BciVI	GTATCC	1 cut(s)	979
BcoDI	GTCTC	5 cut(s)	72, 133, 184, 728, 845
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	90, 299
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	979
BglI	GCCNNNNNGGC	1 cut(s)	522
Bme1390I	CCNGG	4 cut(s)	605, 740, 1101, 1296
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	793
BmgT120I	GGNCC	2 cut(s)	54, 99
BmiI	GGNNCC	4 cut(s)	297, 639, 1050, 1331
BmrFI	CCNGG	4 cut(s)	605, 740, 1101, 1296
BmsI	GCATC	2 cut(s)	657, 974
BmtI	GCTAGC	1 cut(s)	1209
BpiI	GAAGAC	1 cut(s)	905
BpuEI	CTTGAG	2 cut(s)	317, 752
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	2 cut(s)	200, 296
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	291, 738, 1099
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 1124
Bse1I	ACTGG	3 cut(s)	567, 1043, 1322
Bse3DI	GCAATG	1 cut(s)	1316
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	4 cut(s)	605, 740, 1101, 1296
BseDI	CCNNGG	3 cut(s)	291, 738, 1099
BseGI	GGATG	3 cut(s)	598, 672, 1039
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	96, 1124
BseMI	GCAATG	1 cut(s)	1316
BseMII	CTCAG	2 cut(s)	572, 1349
BseNI	ACTGG	3 cut(s)	567, 1043, 1322
BsePI	GCGCGC	1 cut(s)	655
BseRI	GAGGAG	8 cut(s)	49, 172, 184, 227, 239, 267, 270, 676
BseX3I	CGGCCG	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	444, 753
Bsh1236I	CGCG	5 cut(s)	210, 324, 353, 657, 659
Bsh1285I	CGRYCG	2 cut(s)	21, 253
BshFI	GGCC	5 cut(s)	20, 56, 101, 747, 1294
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	2 cut(s)	21, 253
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	17, 530
BslFI	GGGAC	1 cut(s)	1337
BslI	CCNNNNNNNGG	2 cut(s)	96, 1124
BsmAI	GTCTC	5 cut(s)	72, 133, 184, 728, 845
BsmBI	CGTCTC	3 cut(s)	72, 133, 184
BsmFI	GGGAC	1 cut(s)	1337
BsmI	GAATGC	2 cut(s)	4, 525
BsnI	GGCC	5 cut(s)	20, 56, 101, 747, 1294
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	1 cut(s)	375
BspANI	GGCC	5 cut(s)	20, 56, 101, 747, 1294
BspCNI	CTCAG	2 cut(s)	571, 1348
BspFNI	CGCG	5 cut(s)	210, 324, 353, 657, 659
BspLI	GGNNCC	4 cut(s)	297, 639, 1050, 1331
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	1209
BspPI	GGATC	5 cut(s)	318, 580, 632, 645, 914
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	1316
BsrI	ACTGG	3 cut(s)	567, 1043, 1322
BssECI	CCNNGG	3 cut(s)	291, 738, 1099
BssHII	GCGCGC	1 cut(s)	655
BssNI	GRCGYC	2 cut(s)	200, 296
Bst2UI	CCWGG	4 cut(s)	605, 740, 1101, 1296
Bst4CI	ACNGT	3 cut(s)	178, 774, 1144
BstACI	GRCGYC	2 cut(s)	200, 296
BstC8I	GCNNGC	7 cut(s)	326, 341, 518, 657, 745, 958, 1207
BstDEI	CTNAG	3 cut(s)	558, 752, 1335
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	598, 672, 1039
BstFNI	CGCG	5 cut(s)	210, 324, 353, 657, 659
BstH2I	RGCGCY	2 cut(s)	90, 299
BstHHI	GCGC	6 cut(s)	89, 210, 298, 418, 657, 659
BstMAI	GTCTC	5 cut(s)	72, 133, 184, 728, 845
BstMCI	CGRYCG	2 cut(s)	21, 253
BstNI	CCWGG	4 cut(s)	605, 740, 1101, 1296
BstNSI	RCATGY	1 cut(s)	1222
BstSCI	CCNGG	4 cut(s)	603, 738, 1099, 1294
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	5 cut(s)	210, 324, 353, 657, 659
BstV2I	GAAGAC	1 cut(s)	905
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BstZI	CGGCCG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	5 cut(s)	20, 56, 101, 747, 1294
BtgI	CCRYGG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	598, 672, 1039
BtsIMutI	CAGTG	4 cut(s)	574, 770, 786, 1050
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	7 cut(s)	326, 341, 518, 657, 745, 958, 1207
CfoI	GCGC	6 cut(s)	89, 210, 298, 418, 657, 659
Cfr13I	GGNCC	2 cut(s)	54, 99
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	5 cut(s)	316, 938, 947, 1140, 1184
CviAII	CATG	4 cut(s)	928, 961, 1219, 1346
CviQI	GTAC	5 cut(s)	316, 938, 947, 1140, 1184
DdeI	CTNAG	3 cut(s)	558, 752, 1335
DinI	GGCGCC	1 cut(s)	297
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	3 cut(s)	18, 745, 1292
EagI	CGGCCG	1 cut(s)	18
EciI	GGCGGA	3 cut(s)	121, 258, 273
EclXI	CGGCCG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	728
Eco52I	CGGCCG	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	1173, 1200
Eco88I	CYCGRG	1 cut(s)	375
EcoRII	CCWGG	4 cut(s)	603, 738, 1099, 1294
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
Esp3I	CGTCTC	3 cut(s)	72, 133, 184
FaeI	CATG	4 cut(s)	931, 964, 1222, 1349
FaqI	GGGAC	1 cut(s)	1337
FatI	CATG	4 cut(s)	927, 960, 1218, 1345
FauI	CCCGC	4 cut(s)	166, 472, 525, 921
FokI	GGATG	3 cut(s)	605, 679, 1026
GlaI	GCGC	6 cut(s)	88, 209, 297, 417, 656, 658
HaeII	RGCGCY	2 cut(s)	90, 299
HaeIII	GGCC	5 cut(s)	20, 56, 101, 747, 1294
HapII	CCGG	2 cut(s)	17, 530
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	6 cut(s)	89, 210, 298, 418, 657, 659
Hin1I	GRCGYC	2 cut(s)	200, 296
Hin1II	CATG	4 cut(s)	931, 964, 1222, 1349
Hin6I	GCGC	6 cut(s)	87, 208, 296, 416, 655, 657
HinP1I	GCGC	6 cut(s)	87, 208, 296, 416, 655, 657
HpaII	CCGG	2 cut(s)	17, 530
HphI	GGTGA	2 cut(s)	880, 1067
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	7 cut(s)	43, 94, 310, 549, 561, 592, 1338
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	6 cut(s)	26, 202, 205, 236, 388, 580
HpyAV	CCTTC	5 cut(s)	58, 112, 453, 602, 1197
HpyCH4III	ACNGT	3 cut(s)	178, 774, 1144
HpyCH4IV	ACGT	2 cut(s)	200, 792
HpyCH4V	TGCA	7 cut(s)	4, 362, 461, 770, 1015, 1222, 1349
HpyF3I	CTNAG	3 cut(s)	558, 752, 1335
HpySE526I	ACGT	2 cut(s)	200, 792
Hsp92I	GRCGYC	2 cut(s)	200, 296
Hsp92II	CATG	4 cut(s)	931, 964, 1222, 1349
HspAI	GCGC	6 cut(s)	87, 208, 296, 416, 655, 657
KasI	GGCGCC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	1054
LweI	GCATC	2 cut(s)	657, 974
MaeII	ACGT	2 cut(s)	200, 792
MaeIII	GTNAC	1 cut(s)	451
MbiI	CCGCTC	1 cut(s)	188
MboII	GAAGA	5 cut(s)	714, 717, 840, 893, 910
MfeI	CAATTG	3 cut(s)	170, 262, 1155
MflI	RGATCY	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	7 cut(s)	27, 170, 262, 304, 621, 811, 1155
MluNI	TGGCCA	1 cut(s)	747
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	4 cut(s)	415, 581, 692, 765
MmeI	TCCRAC	1 cut(s)	1105
Mox20I	TGGCCA	1 cut(s)	747
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	3 cut(s)	303, 776, 857
MslI	CAYNNNNRTG	2 cut(s)	791, 804
Msp20I	TGGCCA	1 cut(s)	747
MspI	CCGG	2 cut(s)	17, 530
MspR9I	CCNGG	4 cut(s)	605, 740, 1101, 1296
MunI	CAATTG	3 cut(s)	170, 262, 1155
Mva1269I	GAATGC	2 cut(s)	4, 525
MvaI	CCWGG	4 cut(s)	605, 740, 1101, 1296
MvnI	CGCG	5 cut(s)	210, 324, 353, 657, 659
NarI	GGCGCC	1 cut(s)	296
NheI	GCTAGC	1 cut(s)	1205
NlaIII	CATG	4 cut(s)	931, 964, 1222, 1349
NlaIV	GGNNCC	4 cut(s)	297, 639, 1050, 1331
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1222
OliI	CACNNNNGTG	1 cut(s)	791
PauI	GCGCGC	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	2 cut(s)	4, 525
PfeI	GAWTC	6 cut(s)	79, 796, 884, 1114, 1303, 1339
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	4 cut(s)	415, 581, 691, 764
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	4 cut(s)	415, 581, 691, 764
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	4 cut(s)	603, 738, 1099, 1294
PspGI	CCWGG	4 cut(s)	603, 738, 1099, 1294
PspN4I	GGNNCC	4 cut(s)	297, 639, 1050, 1331
PspPI	GGNCC	2 cut(s)	54, 99
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	637
PteI	GCGCGC	1 cut(s)	655
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	5 cut(s)	317, 939, 948, 1141, 1185
RsaNI	GTAC	5 cut(s)	316, 938, 947, 1140, 1184
RseI	CAYNNNNRTG	2 cut(s)	791, 804
SaqAI	TTAA	3 cut(s)	303, 776, 857
Sau96I	GGNCC	2 cut(s)	54, 99
SchI	GAGTC	4 cut(s)	415, 581, 692, 765
ScrFI	CCNGG	4 cut(s)	605, 740, 1101, 1296
SfaNI	GCATC	2 cut(s)	657, 974
SfcI	CTRYAG	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	791, 804
SmlI	CTYRAG	2 cut(s)	332, 731
SmoI	CTYRAG	2 cut(s)	332, 731
Sse9I	AATT	7 cut(s)	27, 170, 262, 304, 621, 811, 1155
SspDI	GGCGCC	1 cut(s)	295
SspI	AATATT	2 cut(s)	834, 847
StyD4I	CCNGG	4 cut(s)	603, 738, 1099, 1294
TaaI	ACNGT	3 cut(s)	178, 774, 1144
TaiI	ACGT	2 cut(s)	203, 795
TaqI	TCGA	9 cut(s)	105, 197, 203, 219, 234, 345, 578, 759, 1112
TasI	AATT	7 cut(s)	27, 170, 262, 304, 621, 811, 1155
TauI	GCSGC	3 cut(s)	164, 274, 324
TfiI	GAWTC	6 cut(s)	79, 796, 884, 1114, 1303, 1339
Tru1I	TTAA	3 cut(s)	303, 776, 857
Tru9I	TTAA	3 cut(s)	303, 776, 857
TscAI	CASTG	4 cut(s)	574, 777, 793, 1050
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	92, 455, 1028
TspGWI	ACGGA	1 cut(s)	1296
TspRI	CASTG	4 cut(s)	574, 777, 793, 1050
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	2 cut(s)	115, 698
XceI	RCATGY	1 cut(s)	1222
ZraI	GACGTC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.